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LOCUS XM_070218874 4394 bp mRNA linear INV 09-DEC-2024 transcript variant X13, mRNA. ACCESSION XM_070218874 VERSION XM_070218874.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4394 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4394 /gene="Appl" /note="amyloid-beta-like protein; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108058164" CDS 350..3082 /gene="Appl" /codon_start=1 /product="amyloid-beta-like protein isoform X11" /protein_id="XP_070074975.1" /db_xref="GeneID:108058164" /translation="MCAALRRNLLLRSLWVVLAIGTAQVQAASPRWEPQIAVLCEAGQ IYQPQYLSEEGRWMTDLSKKTTGATCLRDKMDLLDYCKKAYPNRDITNIVESSHYQKI GGWCRQGALNAAKCKGSHRWIKPFRCLGPFQSDALLVPEGCLFDHIHNASRCWPFVRW NQTGAAACQERGMQMRSFAMLLPCGISVFSGVEFVCCPKHFKTDEIHVKKTDLPVMPP AQITSANDELMVNDEDDSNDSNYSKDANDDELDDEDDLMGDDEEDEMVADEAAAGGGS PSTGSTGDANSGSLDDINAEYDSGEEGDNYEEDGAGSEGEAEGETSWDQSGGSKVVTL KSGASASVPSSGPVSVSASSEKTPAKSSDLVTSTPQLSAAAAAAAAAAAASVNSGNSG VGSSNGGGGAPPSTAQPTSDPYFTHFDPHYEHQSYKVSQKRLEESHREKVTRVMKDWS DLEEKYQDMRLADPKAAQSFKQRMTARFQTSVQALEEEGNAEKHQLAAMHQQRVLAHI NQRKREAMTCYTQALTEQPPNAHHVEKCLQKLLRALHKDRAHALAHYRHLLNSGGPGG LEAAASERPRTLERLIDIDRAVNQSMTMLKRYPELSAKIAQLMNDYILALRSKDDIPG SSLGMSEEAEAGILDKYRIEIERKVAEKERLRLAEKQRKEQRAAEREKLREEKLRMEA KKVDDMLKSQAAEQQQQSQQQQQQSNAQSSTQSQAQQQQQEKSLSSKELGLDGGLVTA ANLNLDTTKSEKELSDTEYAEATVSSTKVQTVLPTVDDDAVQRAVEDVAAAVAHQEAE PQVQHFMTHDLGHRESSFSLRREFAQHAHAAKEGRNVYFTLSFAGIALMAAVFVGVAV AKWRTSRSPHAQGFIEVDQNVTTHHPIVQEEKIVPNMQINGYENPTYKYFEVKE" misc_feature 425..943 /gene="Appl" /note="amyloid A4; Region: A4_EXTRA; smart00006" /db_xref="CDD:128326" misc_feature <1013..>1432 /gene="Appl" /note="MSCRAMM family adhesin clumping factor ClfA; Region: MSCRAMM_ClfA; NF033609" /db_xref="CDD:468110" misc_feature 1556..2134 /gene="Appl" /note="E2 domain of amyloid precursor protein; Region: APP_E2; pfam12925" /db_xref="CDD:463752" misc_feature 2288..>2404 /gene="Appl" /note="DDRGK domain; Region: DDRGK; pfam09756" /db_xref="CDD:370664" misc_feature 2921..3070 /gene="Appl" /note="Beta-amyloid precursor protein C-terminus; Region: APP_amyloid; pfam10515" /db_xref="CDD:463129" polyA_site 4394 /gene="Appl" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctgcgacttt cggactgtca ggacattcga tttggaggca acgagtccgc cgagcagcca 61 gcaccactcg cagtcgtttg tgagcgttcg cagcgccagc aaagtgttaa acgaacaagc 121 caacaacaaa ccaaatacaa gttaaccaga aacagagaat ctgaaaacga aatccaaagc 181 taaattgcaa cccagacgag ccgcaaaaag cagcggtaag ttcagagatt cccgtctgag 241 attcgctgag aagcagagca gacaggagcc gagtttggag agacaggaca caaaggagtc 301 ggagtcagag tcacagccaa ggacaaggat ctcaaaagga gtgcgaacaa tgtgcgccgc 361 gctgcgtcgt aatttgttgc tgcggagcct ctgggtcgtc ctggccattg gcaccgctca 421 ggttcaggcc gcctcgccac gatgggagcc ccagatagcc gttctctgcg aggccggaca 481 aatctatcaa ccgcaatatc tttccgagga gggacgctgg atgacggacc tcagcaagaa 541 gacaaccggc gccacatgtt tgcgtgataa aatggatttg cttgattact gcaagaaggc 601 ctatcccaat cgagacatta cgaacattgt cgagtcatcc cactaccaga agatcggcgg 661 ctggtgtcgt cagggtgctc taaatgcggc caagtgcaag ggctcccacc gctggatcaa 721 gccattccgc tgtctcggac cattccaatc ggacgccctg ctggttcccg agggctgcct 781 cttcgatcac atccacaacg cctcacgctg ctggcccttc gtgaggtgga accaaaccgg 841 agcggccgct tgccaggagc gcggaatgca gatgcgcagc ttcgccatgc tcctgccctg 901 cggcatctcg gtcttctccg gcgtggagtt cgtctgctgt cccaagcact tcaagactga 961 tgaaatccat gtgaaaaaga ccgacctgcc ggtgatgcca ccagcccaga tcaccagtgc 1021 caacgacgaa ctgatggtga atgacgagga cgatagcaat gactcgaatt actcaaagga 1081 tgccaatgac gacgagctgg acgatgagga tgatctgatg ggcgatgatg aggaggacga 1141 gatggtggcg gatgaggcag ctgccggggg aggaagtccc agcaccggat cgactggcga 1201 tgcaaatagc ggatctctgg atgatataaa tgcggaatac gatagcggcg aggagggtga 1261 caactacgag gaggatggag ctggttccga gggcgaagcc gagggtgaga cctcctggga 1321 tcagagcgga ggatctaagg tggtgaccct aaagagtggt gcctccgcct cggtgccgtc 1381 tagtggtccg gtttcagttt ctgcctcatc tgaaaagacg cccgcaaaat cctctgattt 1441 ggtcacgagc actcctcagc tttccgccgc cgccgccgca gccgccgcag ctgctgcagc 1501 atctgtgaac tctggaaact cgggagtagg atcttctaac ggaggaggag gagccccacc 1561 atccaccgca cagcccacct cggacccata cttcacccac tttgatccgc actatgagca 1621 ccagagctac aaagtaagtc agaaacgcct tgaggaatcg catcgcgaga aggtcacgcg 1681 cgtgatgaag gactggtcgg atctggagga gaagtaccag gatatgcgct tggcggaccc 1741 caaggcagcc caatccttta agcagcggat gacggctcgc ttccagactt ctgttcaggc 1801 actcgaggaa gaaggcaacg ccgagaagca ccagctggcc gccatgcacc agcagcgcgt 1861 tttggcccac atcaaccagc ggaagcggga ggccatgacc tgctacaccc aggccctcac 1921 cgaacagccc ccgaacgccc accatgttga gaagtgcctg caaaagttgc tgcgcgccct 1981 gcacaaggac cgtgcccatg ctctggccca ctaccgccac ctgttgaact ctggaggacc 2041 cggtggcctg gaggcggctg cctcggagcg accacgcact ctggagcgcc tgatcgacat 2101 cgatcgtgct gtcaatcagt cgatgaccat gctcaagcgc tacccggagc tatcggccaa 2161 gattgcccag ctgatgaacg attatatttt ggcattgcgc agcaaggacg acattcccgg 2221 ctcgtcgctg ggcatgagcg aggaggcgga ggccggcatt ctggacaagt accgcatcga 2281 gatcgagcgc aaggtggccg agaaggagcg actccggctg gccgaaaagc agcgcaagga 2341 gcagcgggcc gccgagcggg agaaattgcg cgaggagaag ctgcgtatgg aggccaagaa 2401 ggtggacgac atgctcaagt cgcaggcggc cgaacagcag cagcaatcgc agcagcagca 2461 gcagcagtcc aatgcccagt cgtcgaccca atcgcaggcg caacagcagc agcaggagaa 2521 gagcctcagc agcaaggagc tgggtctcga tggcggattg gtcacagcgg ccaatcttaa 2581 cttggacacc accaagagcg agaaggagct gtcggatacc gagtacgccg aggcaacagt 2641 aagcagcacc aaggtgcaga ccgtgctgcc aacggtcgac gatgatgccg tccagcgggc 2701 ggtggaggat gtggccgctg ccgttgctca ccaggaggcc gagccgcagg tgcagcactt 2761 catgacccac gatctgggcc accgcgaatc gagcttctcg ctgcgtcgcg agttcgcgca 2821 gcatgcgcac gcggccaagg agggccgcaa tgtctacttc acgctctcct tcgccggcat 2881 cgccctcatg gcggccgtct ttgtgggcgt ggccgtggcc aaatggcgga catcgcgctc 2941 gccgcacgcc cagggcttca ttgaggtcga tcagaacgtg accacacacc atcccatcgt 3001 ccaggaggag aagatcgtgc ccaacatgca gatcaatggg tacgagaatc cgacctacaa 3061 atatttcgaa gtgaaagagt aagcgggacg gcaagaggag cgcggctggc tagagcgaga 3121 gcgagaacga gaacgccgag cgagcgagag gcacacatca acagcaaaag cagaagaaac 3181 agcagcagca gcaaccacaa tttcaaaatg aagaaactta agcataatat taaaaagcag 3241 atgggaagag aaatgatttt ttttttcgtc aaaaaaggag cgcagttcca ataaggagaa 3301 acgaggggta gaagaagaaa gataaattca atgaatggta atatatctat atattaaatt 3361 aaagcaagca agcagaaagg caagaatata aagcaagcaa ttaaatttaa gtatttgaat 3421 gtttaacaaa atgcagtaaa catcctttct agctctctat ctctctctct ctctcggtct 3481 tactcaacca ctctgtccct ttcccacaca cacacataac tcattacatt cccactttgt 3541 ggttcttgtt gggcgccaaa taaaaagaga gcaaaagaac taatagccaa agaggcaagc 3601 gaaaatccgt gcaaaggaaa gtcggataaa aagattgaaa gtaaaagcat aaagccaagg 3661 acaagaatca cacacaccca cacacaaaag gaaaggagga gcaggcggag gaggtggaga 3721 aagaaaagag agcagaagaa aagcaaatgc aaaacaaaag atattcctag taaataaatt 3781 gtcagcacac agacacacat tcacatacac cgactcactc atagatacag gaacagtcac 3841 acacacacac acacaaccac acacgcattc atggctgctt cgtagcatac ttttgagcgt 3901 ttcgtggcgt tgaaatgctt gcaagccgat cgcaattctt accgacaaaa aaacttacgc 3961 cattaattag agccgcgcta aaagctaaaa gaagatgaaa gctgaaacac agatacacac 4021 actcacactg agacacacat gtgaacctaa gagctaccta cgcgtactaa tctctatacg 4081 aacatgcata tgcgcttatg tatatgtcta actctctctc taaaccacac tcacactcac 4141 acacacacac gaaaacaccc agacaaacgc aaagaaagca actgcaaaaa cccaacaaat 4201 tatatataca catatatata tatatataca atatatttaa agcaaagcaa gaagaaatgt 4261 ccataaatgt atttatgtat ctatacacga gccacacaac ccaaaaaggt cgaaggtcag 4321 ccagctaagg ggagcaggag aattacgatg cttggcaggc tatgaaatta atatatgaat 4381 cagctacgta aaca