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LOCUS XM_070218873 4397 bp mRNA linear INV 09-DEC-2024 transcript variant X12, mRNA. ACCESSION XM_070218873 VERSION XM_070218873.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4397 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4397 /gene="Appl" /note="amyloid-beta-like protein; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108058164" CDS 350..3085 /gene="Appl" /codon_start=1 /product="amyloid-beta-like protein isoform X10" /protein_id="XP_070074974.1" /db_xref="GeneID:108058164" /translation="MCAALRRNLLLRSLWVVLAIGTAQVQAASPRWEPQIAVLCEAGQ IYQPQYLSEEGRWMTDLSKKTTGATCLRDKMDLLDYCKKAYPNRDITNIVESSHYQKI GGWCRQGALNAAKCKGSHRWIKPFRCLEGPFQSDALLVPEGCLFDHIHNASRCWPFVR WNQTGAAACQERGMQMRSFAMLLPCGISVFSGVEFVCCPKHFKTDEIHVKKTDLPVMP PAQITSANDELMVNDEDDSNDSNYSKDANDDELDDEDDLMGDDEEDEMVADEAAAGGG SPSTGSTGDANSGSLDDINAEYDSGEEGDNYEEDGAGSEGEAEGETSWDQSGGSKVVT LKSGASASVPSSGPVSVSASSEKTPAKSSDLVTSTPQLSAAAAAAAAAAAASVNSGNS GVGSSNGGGGAPPSTAQPTSDPYFTHFDPHYEHQSYKVSQKEAQQRLEESHREKVTRV MKDWSDLEEKYQDMRLADPKAAQSFKQRMTARFQALEEEGNAEKHQLAAMHQQRVLAH INQRKREAMTCYTQALTEQPPNAHHVEKCLQKLLRALHKDRAHALAHYRHLLNSGGPG GLEAAASERPRTLERLIDIDRAVNQSMTMLKRYPELSAKIAQLMNDYILALRSKDDIP GSSLGMSEEAEAGILDKYRIEIERKVAEKERLRLAEKQRKEQRAAEREKLREEKLRME AKKVDDMLKSQAAEQQQQSQQQQQQSNAQSSTQSQAQQQQQEKSLSSKELGLDGGLVT AANLNLDTTKSEKELSDTEYAEATVSSTKVQTVLPTVDDDAVQRAVEDVAAAVAHQEA EPQVQHFMTHDLGHRESSFSLRREFAQHAHAAKEGRNVYFTLSFAGIALMAAVFVGVA VAKWRTSRSPHAQGFIEVDQNVTTHHPIVQEEKIVPNMQINGYENPTYKYFEVKE" misc_feature 425..946 /gene="Appl" /note="amyloid A4; Region: A4_EXTRA; smart00006" /db_xref="CDD:128326" misc_feature <1016..>1435 /gene="Appl" /note="MSCRAMM family adhesin clumping factor ClfA; Region: MSCRAMM_ClfA; NF033609" /db_xref="CDD:468110" misc_feature 1559..2137 /gene="Appl" /note="E2 domain of amyloid precursor protein; Region: APP_E2; pfam12925" /db_xref="CDD:463752" misc_feature 2291..>2407 /gene="Appl" /note="DDRGK domain; Region: DDRGK; pfam09756" /db_xref="CDD:370664" misc_feature 2924..3073 /gene="Appl" /note="Beta-amyloid precursor protein C-terminus; Region: APP_amyloid; pfam10515" /db_xref="CDD:463129" polyA_site 4397 /gene="Appl" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctgcgacttt cggactgtca ggacattcga tttggaggca acgagtccgc cgagcagcca 61 gcaccactcg cagtcgtttg tgagcgttcg cagcgccagc aaagtgttaa acgaacaagc 121 caacaacaaa ccaaatacaa gttaaccaga aacagagaat ctgaaaacga aatccaaagc 181 taaattgcaa cccagacgag ccgcaaaaag cagcggtaag ttcagagatt cccgtctgag 241 attcgctgag aagcagagca gacaggagcc gagtttggag agacaggaca caaaggagtc 301 ggagtcagag tcacagccaa ggacaaggat ctcaaaagga gtgcgaacaa tgtgcgccgc 361 gctgcgtcgt aatttgttgc tgcggagcct ctgggtcgtc ctggccattg gcaccgctca 421 ggttcaggcc gcctcgccac gatgggagcc ccagatagcc gttctctgcg aggccggaca 481 aatctatcaa ccgcaatatc tttccgagga gggacgctgg atgacggacc tcagcaagaa 541 gacaaccggc gccacatgtt tgcgtgataa aatggatttg cttgattact gcaagaaggc 601 ctatcccaat cgagacatta cgaacattgt cgagtcatcc cactaccaga agatcggcgg 661 ctggtgtcgt cagggtgctc taaatgcggc caagtgcaag ggctcccacc gctggatcaa 721 gccattccgc tgtctcgaag gaccattcca atcggacgcc ctgctggttc ccgagggctg 781 cctcttcgat cacatccaca acgcctcacg ctgctggccc ttcgtgaggt ggaaccaaac 841 cggagcggcc gcttgccagg agcgcggaat gcagatgcgc agcttcgcca tgctcctgcc 901 ctgcggcatc tcggtcttct ccggcgtgga gttcgtctgc tgtcccaagc acttcaagac 961 tgatgaaatc catgtgaaaa agaccgacct gccggtgatg ccaccagccc agatcaccag 1021 tgccaacgac gaactgatgg tgaatgacga ggacgatagc aatgactcga attactcaaa 1081 ggatgccaat gacgacgagc tggacgatga ggatgatctg atgggcgatg atgaggagga 1141 cgagatggtg gcggatgagg cagctgccgg gggaggaagt cccagcaccg gatcgactgg 1201 cgatgcaaat agcggatctc tggatgatat aaatgcggaa tacgatagcg gcgaggaggg 1261 tgacaactac gaggaggatg gagctggttc cgagggcgaa gccgagggtg agacctcctg 1321 ggatcagagc ggaggatcta aggtggtgac cctaaagagt ggtgcctccg cctcggtgcc 1381 gtctagtggt ccggtttcag tttctgcctc atctgaaaag acgcccgcaa aatcctctga 1441 tttggtcacg agcactcctc agctttccgc cgccgccgcc gcagccgccg cagctgctgc 1501 agcatctgtg aactctggaa actcgggagt aggatcttct aacggaggag gaggagcccc 1561 accatccacc gcacagccca cctcggaccc atacttcacc cactttgatc cgcactatga 1621 gcaccagagc tacaaagtaa gtcagaaaga agcccaacag cgccttgagg aatcgcatcg 1681 cgagaaggtc acgcgcgtga tgaaggactg gtcggatctg gaggagaagt accaggatat 1741 gcgcttggcg gaccccaagg cagcccaatc ctttaagcag cggatgacgg ctcgcttcca 1801 ggcactcgag gaagaaggca acgccgagaa gcaccagctg gccgccatgc accagcagcg 1861 cgttttggcc cacatcaacc agcggaagcg ggaggccatg acctgctaca cccaggccct 1921 caccgaacag cccccgaacg cccaccatgt tgagaagtgc ctgcaaaagt tgctgcgcgc 1981 cctgcacaag gaccgtgccc atgctctggc ccactaccgc cacctgttga actctggagg 2041 acccggtggc ctggaggcgg ctgcctcgga gcgaccacgc actctggagc gcctgatcga 2101 catcgatcgt gctgtcaatc agtcgatgac catgctcaag cgctacccgg agctatcggc 2161 caagattgcc cagctgatga acgattatat tttggcattg cgcagcaagg acgacattcc 2221 cggctcgtcg ctgggcatga gcgaggaggc ggaggccggc attctggaca agtaccgcat 2281 cgagatcgag cgcaaggtgg ccgagaagga gcgactccgg ctggccgaaa agcagcgcaa 2341 ggagcagcgg gccgccgagc gggagaaatt gcgcgaggag aagctgcgta tggaggccaa 2401 gaaggtggac gacatgctca agtcgcaggc ggccgaacag cagcagcaat cgcagcagca 2461 gcagcagcag tccaatgccc agtcgtcgac ccaatcgcag gcgcaacagc agcagcagga 2521 gaagagcctc agcagcaagg agctgggtct cgatggcgga ttggtcacag cggccaatct 2581 taacttggac accaccaaga gcgagaagga gctgtcggat accgagtacg ccgaggcaac 2641 agtaagcagc accaaggtgc agaccgtgct gccaacggtc gacgatgatg ccgtccagcg 2701 ggcggtggag gatgtggccg ctgccgttgc tcaccaggag gccgagccgc aggtgcagca 2761 cttcatgacc cacgatctgg gccaccgcga atcgagcttc tcgctgcgtc gcgagttcgc 2821 gcagcatgcg cacgcggcca aggagggccg caatgtctac ttcacgctct ccttcgccgg 2881 catcgccctc atggcggccg tctttgtggg cgtggccgtg gccaaatggc ggacatcgcg 2941 ctcgccgcac gcccagggct tcattgaggt cgatcagaac gtgaccacac accatcccat 3001 cgtccaggag gagaagatcg tgcccaacat gcagatcaat gggtacgaga atccgaccta 3061 caaatatttc gaagtgaaag agtaagcggg acggcaagag gagcgcggct ggctagagcg 3121 agagcgagaa cgagaacgcc gagcgagcga gaggcacaca tcaacagcaa aagcagaaga 3181 aacagcagca gcagcaacca caatttcaaa atgaagaaac ttaagcataa tattaaaaag 3241 cagatgggaa gagaaatgat tttttttttc gtcaaaaaag gagcgcagtt ccaataagga 3301 gaaacgaggg gtagaagaag aaagataaat tcaatgaatg gtaatatatc tatatattaa 3361 attaaagcaa gcaagcagaa aggcaagaat ataaagcaag caattaaatt taagtatttg 3421 aatgtttaac aaaatgcagt aaacatcctt tctagctctc tatctctctc tctctctcgg 3481 tcttactcaa ccactctgtc cctttcccac acacacacat aactcattac attcccactt 3541 tgtggttctt gttgggcgcc aaataaaaag agagcaaaag aactaatagc caaagaggca 3601 agcgaaaatc cgtgcaaagg aaagtcggat aaaaagattg aaagtaaaag cataaagcca 3661 aggacaagaa tcacacacac ccacacacaa aaggaaagga ggagcaggcg gaggaggtgg 3721 agaaagaaaa gagagcagaa gaaaagcaaa tgcaaaacaa aagatattcc tagtaaataa 3781 attgtcagca cacagacaca cattcacata caccgactca ctcatagata caggaacagt 3841 cacacacaca cacacacaac cacacacgca ttcatggctg cttcgtagca tacttttgag 3901 cgtttcgtgg cgttgaaatg cttgcaagcc gatcgcaatt cttaccgaca aaaaaactta 3961 cgccattaat tagagccgcg ctaaaagcta aaagaagatg aaagctgaaa cacagataca 4021 cacactcaca ctgagacaca catgtgaacc taagagctac ctacgcgtac taatctctat 4081 acgaacatgc atatgcgctt atgtatatgt ctaactctct ctctaaacca cactcacact 4141 cacacacaca cacgaaaaca cccagacaaa cgcaaagaaa gcaactgcaa aaacccaaca 4201 aattatatat acacatatat atatatatat acaatatatt taaagcaaag caagaagaaa 4261 tgtccataaa tgtatttatg tatctataca cgagccacac aacccaaaaa ggtcgaaggt 4321 cagccagcta aggggagcag gagaattacg atgcttggca ggctatgaaa ttaatatatg 4381 aatcagctac gtaaaca