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LOCUS XM_070218872 4409 bp mRNA linear INV 09-DEC-2024 transcript variant X10, mRNA. ACCESSION XM_070218872 VERSION XM_070218872.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4409 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4409 /gene="Appl" /note="amyloid-beta-like protein; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108058164" CDS 350..3097 /gene="Appl" /codon_start=1 /product="amyloid-beta-like protein isoform X8" /protein_id="XP_070074973.1" /db_xref="GeneID:108058164" /translation="MCAALRRNLLLRSLWVVLAIGTAQVQAASPRWEPQIAVLCEAGQ IYQPQYLSEEGRWMTDLSKKTTGATCLRDKMDLLDYCKKAYPNRDITNIVESSHYQKI GGWCRQGALNAAKCKGSHRWIKPFRCLEGPFQSDALLVPEGCLFDHIHNASRCWPFVR WNQTGAAACQERGMQMRSFAMLLPCGISVFSGVEFVCCPKHFKTDEIHVKKTDLPVMP PAQITSANDELMVNDEDDSNDSNYSKDANDDELDDEDDLMGDDEEDEMVADEAAAGGG SPSTGSTGDANSGSLDDINAEYDSGEEGDNYEEDGAGSEGEAEGETSWDQSGGSKVVT LKSGASASVPSSGPVSVSASSEKTPAKSSDLVTSTPQLSAAAAAAAAAAAASVNSGNS GVGSSNGGGGAPPSTAQPTSDPYFTHFDPHYEHQSYKVSQKEAQQRLEESHREKVTRV MKDWSDLEEKYQDMRLADPKAAQSFKQRMTARFQTSVQALEEEGNAEKHQLAAMHQQR VLAHINQRKREAMTCYTQALTEQPPNAHHVEKCLQKLLRALHKDRAHALAHYRHLLNS GGPGGLEAAASERPRTLERLIDIDRAVNQSMTMLKRYPELSAKIAQLMNDYILALRSK DDIPGSSLGMSEEAEAGILDKYRIEIERKVAEKERLRLAEKQRKEQRAAEREKLREEK LRMEAKKVDDMLKSQAAEQQQQSQQQQQQSNAQSSTQSQAQQQQQEKSLSSKELGLDG GLVTAANLNLDTTKSEKELSDTEYAEATVSSTKVQTVLPTVDDDAVQRAVEDVAAAVA HQEAEPQVQHFMTHDLGHRESSFSLRREFAQHAHAAKEGRNVYFTLSFAGIALMAAVF VGVAVAKWRTSRSPHAQGFIEVDQNVTTHHPIVQEEKIVPNMQINGYENPTYKYFEVK E" misc_feature 425..946 /gene="Appl" /note="amyloid A4; Region: A4_EXTRA; smart00006" /db_xref="CDD:128326" misc_feature <1016..>1435 /gene="Appl" /note="MSCRAMM family adhesin clumping factor ClfA; Region: MSCRAMM_ClfA; NF033609" /db_xref="CDD:468110" misc_feature 1559..2149 /gene="Appl" /note="E2 domain of amyloid precursor protein; Region: APP_E2; pfam12925" /db_xref="CDD:463752" misc_feature 2303..>2419 /gene="Appl" /note="DDRGK domain; Region: DDRGK; pfam09756" /db_xref="CDD:370664" misc_feature 2936..3085 /gene="Appl" /note="Beta-amyloid precursor protein C-terminus; Region: APP_amyloid; pfam10515" /db_xref="CDD:463129" polyA_site 4409 /gene="Appl" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctgcgacttt cggactgtca ggacattcga tttggaggca acgagtccgc cgagcagcca 61 gcaccactcg cagtcgtttg tgagcgttcg cagcgccagc aaagtgttaa acgaacaagc 121 caacaacaaa ccaaatacaa gttaaccaga aacagagaat ctgaaaacga aatccaaagc 181 taaattgcaa cccagacgag ccgcaaaaag cagcggtaag ttcagagatt cccgtctgag 241 attcgctgag aagcagagca gacaggagcc gagtttggag agacaggaca caaaggagtc 301 ggagtcagag tcacagccaa ggacaaggat ctcaaaagga gtgcgaacaa tgtgcgccgc 361 gctgcgtcgt aatttgttgc tgcggagcct ctgggtcgtc ctggccattg gcaccgctca 421 ggttcaggcc gcctcgccac gatgggagcc ccagatagcc gttctctgcg aggccggaca 481 aatctatcaa ccgcaatatc tttccgagga gggacgctgg atgacggacc tcagcaagaa 541 gacaaccggc gccacatgtt tgcgtgataa aatggatttg cttgattact gcaagaaggc 601 ctatcccaat cgagacatta cgaacattgt cgagtcatcc cactaccaga agatcggcgg 661 ctggtgtcgt cagggtgctc taaatgcggc caagtgcaag ggctcccacc gctggatcaa 721 gccattccgc tgtctcgaag gaccattcca atcggacgcc ctgctggttc ccgagggctg 781 cctcttcgat cacatccaca acgcctcacg ctgctggccc ttcgtgaggt ggaaccaaac 841 cggagcggcc gcttgccagg agcgcggaat gcagatgcgc agcttcgcca tgctcctgcc 901 ctgcggcatc tcggtcttct ccggcgtgga gttcgtctgc tgtcccaagc acttcaagac 961 tgatgaaatc catgtgaaaa agaccgacct gccggtgatg ccaccagccc agatcaccag 1021 tgccaacgac gaactgatgg tgaatgacga ggacgatagc aatgactcga attactcaaa 1081 ggatgccaat gacgacgagc tggacgatga ggatgatctg atgggcgatg atgaggagga 1141 cgagatggtg gcggatgagg cagctgccgg gggaggaagt cccagcaccg gatcgactgg 1201 cgatgcaaat agcggatctc tggatgatat aaatgcggaa tacgatagcg gcgaggaggg 1261 tgacaactac gaggaggatg gagctggttc cgagggcgaa gccgagggtg agacctcctg 1321 ggatcagagc ggaggatcta aggtggtgac cctaaagagt ggtgcctccg cctcggtgcc 1381 gtctagtggt ccggtttcag tttctgcctc atctgaaaag acgcccgcaa aatcctctga 1441 tttggtcacg agcactcctc agctttccgc cgccgccgcc gcagccgccg cagctgctgc 1501 agcatctgtg aactctggaa actcgggagt aggatcttct aacggaggag gaggagcccc 1561 accatccacc gcacagccca cctcggaccc atacttcacc cactttgatc cgcactatga 1621 gcaccagagc tacaaagtaa gtcagaaaga agcccaacag cgccttgagg aatcgcatcg 1681 cgagaaggtc acgcgcgtga tgaaggactg gtcggatctg gaggagaagt accaggatat 1741 gcgcttggcg gaccccaagg cagcccaatc ctttaagcag cggatgacgg ctcgcttcca 1801 gacttctgtt caggcactcg aggaagaagg caacgccgag aagcaccagc tggccgccat 1861 gcaccagcag cgcgttttgg cccacatcaa ccagcggaag cgggaggcca tgacctgcta 1921 cacccaggcc ctcaccgaac agcccccgaa cgcccaccat gttgagaagt gcctgcaaaa 1981 gttgctgcgc gccctgcaca aggaccgtgc ccatgctctg gcccactacc gccacctgtt 2041 gaactctgga ggacccggtg gcctggaggc ggctgcctcg gagcgaccac gcactctgga 2101 gcgcctgatc gacatcgatc gtgctgtcaa tcagtcgatg accatgctca agcgctaccc 2161 ggagctatcg gccaagattg cccagctgat gaacgattat attttggcat tgcgcagcaa 2221 ggacgacatt cccggctcgt cgctgggcat gagcgaggag gcggaggccg gcattctgga 2281 caagtaccgc atcgagatcg agcgcaaggt ggccgagaag gagcgactcc ggctggccga 2341 aaagcagcgc aaggagcagc gggccgccga gcgggagaaa ttgcgcgagg agaagctgcg 2401 tatggaggcc aagaaggtgg acgacatgct caagtcgcag gcggccgaac agcagcagca 2461 atcgcagcag cagcagcagc agtccaatgc ccagtcgtcg acccaatcgc aggcgcaaca 2521 gcagcagcag gagaagagcc tcagcagcaa ggagctgggt ctcgatggcg gattggtcac 2581 agcggccaat cttaacttgg acaccaccaa gagcgagaag gagctgtcgg ataccgagta 2641 cgccgaggca acagtaagca gcaccaaggt gcagaccgtg ctgccaacgg tcgacgatga 2701 tgccgtccag cgggcggtgg aggatgtggc cgctgccgtt gctcaccagg aggccgagcc 2761 gcaggtgcag cacttcatga cccacgatct gggccaccgc gaatcgagct tctcgctgcg 2821 tcgcgagttc gcgcagcatg cgcacgcggc caaggagggc cgcaatgtct acttcacgct 2881 ctccttcgcc ggcatcgccc tcatggcggc cgtctttgtg ggcgtggccg tggccaaatg 2941 gcggacatcg cgctcgccgc acgcccaggg cttcattgag gtcgatcaga acgtgaccac 3001 acaccatccc atcgtccagg aggagaagat cgtgcccaac atgcagatca atgggtacga 3061 gaatccgacc tacaaatatt tcgaagtgaa agagtaagcg ggacggcaag aggagcgcgg 3121 ctggctagag cgagagcgag aacgagaacg ccgagcgagc gagaggcaca catcaacagc 3181 aaaagcagaa gaaacagcag cagcagcaac cacaatttca aaatgaagaa acttaagcat 3241 aatattaaaa agcagatggg aagagaaatg attttttttt tcgtcaaaaa aggagcgcag 3301 ttccaataag gagaaacgag gggtagaaga agaaagataa attcaatgaa tggtaatata 3361 tctatatatt aaattaaagc aagcaagcag aaaggcaaga atataaagca agcaattaaa 3421 tttaagtatt tgaatgttta acaaaatgca gtaaacatcc tttctagctc tctatctctc 3481 tctctctctc ggtcttactc aaccactctg tccctttccc acacacacac ataactcatt 3541 acattcccac tttgtggttc ttgttgggcg ccaaataaaa agagagcaaa agaactaata 3601 gccaaagagg caagcgaaaa tccgtgcaaa ggaaagtcgg ataaaaagat tgaaagtaaa 3661 agcataaagc caaggacaag aatcacacac acccacacac aaaaggaaag gaggagcagg 3721 cggaggaggt ggagaaagaa aagagagcag aagaaaagca aatgcaaaac aaaagatatt 3781 cctagtaaat aaattgtcag cacacagaca cacattcaca tacaccgact cactcataga 3841 tacaggaaca gtcacacaca cacacacaca accacacacg cattcatggc tgcttcgtag 3901 catacttttg agcgtttcgt ggcgttgaaa tgcttgcaag ccgatcgcaa ttcttaccga 3961 caaaaaaact tacgccatta attagagccg cgctaaaagc taaaagaaga tgaaagctga 4021 aacacagata cacacactca cactgagaca cacatgtgaa cctaagagct acctacgcgt 4081 actaatctct atacgaacat gcatatgcgc ttatgtatat gtctaactct ctctctaaac 4141 cacactcaca ctcacacaca cacacgaaaa cacccagaca aacgcaaaga aagcaactgc 4201 aaaaacccaa caaattatat atacacatat atatatatat atacaatata tttaaagcaa 4261 agcaagaaga aatgtccata aatgtattta tgtatctata cacgagccac acaacccaaa 4321 aaggtcgaag gtcagccagc taaggggagc aggagaatta cgatgcttgg caggctatga 4381 aattaatata tgaatcagct acgtaaaca