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LOCUS XM_070218871 4484 bp mRNA linear INV 09-DEC-2024 transcript variant X5, mRNA. ACCESSION XM_070218871 VERSION XM_070218871.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4484 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4484 /gene="Appl" /note="amyloid-beta-like protein; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108058164" CDS 350..3172 /gene="Appl" /codon_start=1 /product="amyloid-beta-like protein isoform X3" /protein_id="XP_070074972.1" /db_xref="GeneID:108058164" /translation="MCAALRRNLLLRSLWVVLAIGTAQVQAASPRWEPQIAVLCEAGQ IYQPQYLSEEGRWMTDLSKKTTGATCLRDKMDLLDYCKKAYPNRDITNIVESSHYQKI GGWCRQGALNAAKCKGSHRWIKPFRCLGPFQSDALLVPEGCLFDHIHNASRCWPFVRW NQTGAAACQERGMQMRSFAMLLPCGISVFSGVEFVCCPKHFKTDEIHVKKTDLPVMPP AQITSANDELMVNDEDDSNDSNYSKDANDDELDDEDDLMGDDEEDEMVADEAAAGGGS PSTGSTGDANSGSLDDINAEYDSGEEGDNYEEDGAGSEGEAEGETSWDQSGGSKVVTL KSGASASVPSSGPVSVSASSEKTPAKSSDLVTSTPQLSAAAAAAAAAAAASVNSGNSG VGSSNGGGGAPPSTAQPTSDPYFTHFDPHYEHQSYKVSQKEAQQRLEESHREKVTRVM KDWSDLEEKYQDMRLADPKAAQSFKQRMTARFQTSVQALEEEGNAEKHQLAAMHQQRV LAHINQRKREAMTCYTQALTEQPPNAHHVEKCLQKLLRALHKDRAHALAHYRHLLNSG GPGGLEAAASERPRTLERLIDIDRAVNQSMTMLKRYPELSAKIAQLMNDYILALRSKD DIPGSSLGMSEEAEAGILDKYRIEIERKVAEKERLRLAEKQRKEQRAAEREKLREEKL RMEAKKVDDMLKSQAAEQQQQSQQQQQQSNAQSSTQSQAQQQQQEKSLSSKELGLDGG LVTAANLNLDTTKSEKELSDTEYAEATVSSTKVQTVLPTVDDDAVQRAVEDVAAAVAH QEAEPQVQHFMTHDLGHRESVFELRRQLVPHLPKAYPLSLSPLSLQSFSLRREFAQHA HAAKEGRNVYFTLSFAGIALMAAVFVGVAVAKWRTSRSPHAQGFIEVDQNVTTHHPIV QEEKIVPNMQINGYENPTYKYFEVKE" misc_feature 425..943 /gene="Appl" /note="amyloid A4; Region: A4_EXTRA; smart00006" /db_xref="CDD:128326" misc_feature <1013..>1432 /gene="Appl" /note="MSCRAMM family adhesin clumping factor ClfA; Region: MSCRAMM_ClfA; NF033609" /db_xref="CDD:468110" misc_feature 1556..2146 /gene="Appl" /note="E2 domain of amyloid precursor protein; Region: APP_E2; pfam12925" /db_xref="CDD:463752" misc_feature 2300..>2416 /gene="Appl" /note="DDRGK domain; Region: DDRGK; pfam09756" /db_xref="CDD:370664" misc_feature 3011..3160 /gene="Appl" /note="Beta-amyloid precursor protein C-terminus; Region: APP_amyloid; pfam10515" /db_xref="CDD:463129" polyA_site 4484 /gene="Appl" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctgcgacttt cggactgtca ggacattcga tttggaggca acgagtccgc cgagcagcca 61 gcaccactcg cagtcgtttg tgagcgttcg cagcgccagc aaagtgttaa acgaacaagc 121 caacaacaaa ccaaatacaa gttaaccaga aacagagaat ctgaaaacga aatccaaagc 181 taaattgcaa cccagacgag ccgcaaaaag cagcggtaag ttcagagatt cccgtctgag 241 attcgctgag aagcagagca gacaggagcc gagtttggag agacaggaca caaaggagtc 301 ggagtcagag tcacagccaa ggacaaggat ctcaaaagga gtgcgaacaa tgtgcgccgc 361 gctgcgtcgt aatttgttgc tgcggagcct ctgggtcgtc ctggccattg gcaccgctca 421 ggttcaggcc gcctcgccac gatgggagcc ccagatagcc gttctctgcg aggccggaca 481 aatctatcaa ccgcaatatc tttccgagga gggacgctgg atgacggacc tcagcaagaa 541 gacaaccggc gccacatgtt tgcgtgataa aatggatttg cttgattact gcaagaaggc 601 ctatcccaat cgagacatta cgaacattgt cgagtcatcc cactaccaga agatcggcgg 661 ctggtgtcgt cagggtgctc taaatgcggc caagtgcaag ggctcccacc gctggatcaa 721 gccattccgc tgtctcggac cattccaatc ggacgccctg ctggttcccg agggctgcct 781 cttcgatcac atccacaacg cctcacgctg ctggcccttc gtgaggtgga accaaaccgg 841 agcggccgct tgccaggagc gcggaatgca gatgcgcagc ttcgccatgc tcctgccctg 901 cggcatctcg gtcttctccg gcgtggagtt cgtctgctgt cccaagcact tcaagactga 961 tgaaatccat gtgaaaaaga ccgacctgcc ggtgatgcca ccagcccaga tcaccagtgc 1021 caacgacgaa ctgatggtga atgacgagga cgatagcaat gactcgaatt actcaaagga 1081 tgccaatgac gacgagctgg acgatgagga tgatctgatg ggcgatgatg aggaggacga 1141 gatggtggcg gatgaggcag ctgccggggg aggaagtccc agcaccggat cgactggcga 1201 tgcaaatagc ggatctctgg atgatataaa tgcggaatac gatagcggcg aggagggtga 1261 caactacgag gaggatggag ctggttccga gggcgaagcc gagggtgaga cctcctggga 1321 tcagagcgga ggatctaagg tggtgaccct aaagagtggt gcctccgcct cggtgccgtc 1381 tagtggtccg gtttcagttt ctgcctcatc tgaaaagacg cccgcaaaat cctctgattt 1441 ggtcacgagc actcctcagc tttccgccgc cgccgccgca gccgccgcag ctgctgcagc 1501 atctgtgaac tctggaaact cgggagtagg atcttctaac ggaggaggag gagccccacc 1561 atccaccgca cagcccacct cggacccata cttcacccac tttgatccgc actatgagca 1621 ccagagctac aaagtaagtc agaaagaagc ccaacagcgc cttgaggaat cgcatcgcga 1681 gaaggtcacg cgcgtgatga aggactggtc ggatctggag gagaagtacc aggatatgcg 1741 cttggcggac cccaaggcag cccaatcctt taagcagcgg atgacggctc gcttccagac 1801 ttctgttcag gcactcgagg aagaaggcaa cgccgagaag caccagctgg ccgccatgca 1861 ccagcagcgc gttttggccc acatcaacca gcggaagcgg gaggccatga cctgctacac 1921 ccaggccctc accgaacagc ccccgaacgc ccaccatgtt gagaagtgcc tgcaaaagtt 1981 gctgcgcgcc ctgcacaagg accgtgccca tgctctggcc cactaccgcc acctgttgaa 2041 ctctggagga cccggtggcc tggaggcggc tgcctcggag cgaccacgca ctctggagcg 2101 cctgatcgac atcgatcgtg ctgtcaatca gtcgatgacc atgctcaagc gctacccgga 2161 gctatcggcc aagattgccc agctgatgaa cgattatatt ttggcattgc gcagcaagga 2221 cgacattccc ggctcgtcgc tgggcatgag cgaggaggcg gaggccggca ttctggacaa 2281 gtaccgcatc gagatcgagc gcaaggtggc cgagaaggag cgactccggc tggccgaaaa 2341 gcagcgcaag gagcagcggg ccgccgagcg ggagaaattg cgcgaggaga agctgcgtat 2401 ggaggccaag aaggtggacg acatgctcaa gtcgcaggcg gccgaacagc agcagcaatc 2461 gcagcagcag cagcagcagt ccaatgccca gtcgtcgacc caatcgcagg cgcaacagca 2521 gcagcaggag aagagcctca gcagcaagga gctgggtctc gatggcggat tggtcacagc 2581 ggccaatctt aacttggaca ccaccaagag cgagaaggag ctgtcggata ccgagtacgc 2641 cgaggcaaca gtaagcagca ccaaggtgca gaccgtgctg ccaacggtcg acgatgatgc 2701 cgtccagcgg gcggtggagg atgtggccgc tgccgttgct caccaggagg ccgagccgca 2761 ggtgcagcac ttcatgaccc acgatctggg ccaccgcgaa tcggtatttg agctgcggcg 2821 ccaactcgta ccgcatttgc ctaaagccta tcccctctct ctctctcccc tctcgttgca 2881 gagcttctcg ctgcgtcgcg agttcgcgca gcatgcgcac gcggccaagg agggccgcaa 2941 tgtctacttc acgctctcct tcgccggcat cgccctcatg gcggccgtct ttgtgggcgt 3001 ggccgtggcc aaatggcgga catcgcgctc gccgcacgcc cagggcttca ttgaggtcga 3061 tcagaacgtg accacacacc atcccatcgt ccaggaggag aagatcgtgc ccaacatgca 3121 gatcaatggg tacgagaatc cgacctacaa atatttcgaa gtgaaagagt aagcgggacg 3181 gcaagaggag cgcggctggc tagagcgaga gcgagaacga gaacgccgag cgagcgagag 3241 gcacacatca acagcaaaag cagaagaaac agcagcagca gcaaccacaa tttcaaaatg 3301 aagaaactta agcataatat taaaaagcag atgggaagag aaatgatttt ttttttcgtc 3361 aaaaaaggag cgcagttcca ataaggagaa acgaggggta gaagaagaaa gataaattca 3421 atgaatggta atatatctat atattaaatt aaagcaagca agcagaaagg caagaatata 3481 aagcaagcaa ttaaatttaa gtatttgaat gtttaacaaa atgcagtaaa catcctttct 3541 agctctctat ctctctctct ctctcggtct tactcaacca ctctgtccct ttcccacaca 3601 cacacataac tcattacatt cccactttgt ggttcttgtt gggcgccaaa taaaaagaga 3661 gcaaaagaac taatagccaa agaggcaagc gaaaatccgt gcaaaggaaa gtcggataaa 3721 aagattgaaa gtaaaagcat aaagccaagg acaagaatca cacacaccca cacacaaaag 3781 gaaaggagga gcaggcggag gaggtggaga aagaaaagag agcagaagaa aagcaaatgc 3841 aaaacaaaag atattcctag taaataaatt gtcagcacac agacacacat tcacatacac 3901 cgactcactc atagatacag gaacagtcac acacacacac acacaaccac acacgcattc 3961 atggctgctt cgtagcatac ttttgagcgt ttcgtggcgt tgaaatgctt gcaagccgat 4021 cgcaattctt accgacaaaa aaacttacgc cattaattag agccgcgcta aaagctaaaa 4081 gaagatgaaa gctgaaacac agatacacac actcacactg agacacacat gtgaacctaa 4141 gagctaccta cgcgtactaa tctctatacg aacatgcata tgcgcttatg tatatgtcta 4201 actctctctc taaaccacac tcacactcac acacacacac gaaaacaccc agacaaacgc 4261 aaagaaagca actgcaaaaa cccaacaaat tatatataca catatatata tatatataca 4321 atatatttaa agcaaagcaa gaagaaatgt ccataaatgt atttatgtat ctatacacga 4381 gccacacaac ccaaaaaggt cgaaggtcag ccagctaagg ggagcaggag aattacgatg 4441 cttggcaggc tatgaaatta atatatgaat cagctacgta aaca