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LOCUS XM_070218870 4499 bp mRNA linear INV 09-DEC-2024 transcript variant X3, mRNA. ACCESSION XM_070218870 VERSION XM_070218870.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4499 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4499 /gene="Appl" /note="amyloid-beta-like protein; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108058164" CDS 362..3187 /gene="Appl" /codon_start=1 /product="amyloid-beta-like protein isoform X1" /protein_id="XP_070074971.1" /db_xref="GeneID:108058164" /translation="MCAALRRNLLLRSLWVVLAIGTAQVQAASPRWEPQIAVLCEAGQ IYQPQYLSEEGRWMTDLSKKTTGATCLRDKMDLLDYCKKAYPNRDITNIVESSHYQKI GGWCRQGALNAAKCKGSHRWIKPFRCLEGPFQSDALLVPEGCLFDHIHNASRCWPFVR WNQTGAAACQERGMQMRSFAMLLPCGISVFSGVEFVCCPKHFKTDEIHVKKTDLPVMP PAQITSANDELMVNDEDDSNDSNYSKDANDDELDDEDDLMGDDEEDEMVADEAAAGGG SPSTGSTGDANSGSLDDINAEYDSGEEGDNYEEDGAGSEGEAEGETSWDQSGGSKVVT LKSGASASVPSSGPVSVSASSEKTPAKSSDLVTSTPQLSAAAAAAAAAAAASVNSGNS GVGSSNGGGGAPPSTAQPTSDPYFTHFDPHYEHQSYKVSQKEAQQRLEESHREKVTRV MKDWSDLEEKYQDMRLADPKAAQSFKQRMTARFQTSVQALEEEGNAEKHQLAAMHQQR VLAHINQRKREAMTCYTQALTEQPPNAHHVEKCLQKLLRALHKDRAHALAHYRHLLNS GGPGGLEAAASERPRTLERLIDIDRAVNQSMTMLKRYPELSAKIAQLMNDYILALRSK DDIPGSSLGMSEEAEAGILDKYRIEIERKVAEKERLRLAEKQRKEQRAAEREKLREEK LRMEAKKVDDMLKSQAAEQQQQSQQQQQQSNAQSSTQSQAQQQQQEKSLSSKELGLDG GLVTAANLNLDTTKSEKELSDTEYAEATVSSTKVQTVLPTVDDDAVQRAVEDVAAAVA HQEAEPQVQHFMTHDLGHRESVFELRRQLVPHLPKAYPLSLSPLSLQSFSLRREFAQH AHAAKEGRNVYFTLSFAGIALMAAVFVGVAVAKWRTSRSPHAQGFIEVDQNVTTHHPI VQEEKIVPNMQINGYENPTYKYFEVKE" misc_feature 437..958 /gene="Appl" /note="amyloid A4; Region: A4_EXTRA; smart00006" /db_xref="CDD:128326" misc_feature <1028..>1447 /gene="Appl" /note="MSCRAMM family adhesin clumping factor ClfA; Region: MSCRAMM_ClfA; NF033609" /db_xref="CDD:468110" misc_feature 1571..2161 /gene="Appl" /note="E2 domain of amyloid precursor protein; Region: APP_E2; pfam12925" /db_xref="CDD:463752" misc_feature 2315..>2431 /gene="Appl" /note="DDRGK domain; Region: DDRGK; pfam09756" /db_xref="CDD:370664" misc_feature 3026..3175 /gene="Appl" /note="Beta-amyloid precursor protein C-terminus; Region: APP_amyloid; pfam10515" /db_xref="CDD:463129" polyA_site 4499 /gene="Appl" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gcgttcgcag cgccagtgca aagtgttaaa aagagaaaac cccaaagaga aacaaagaag 61 aagaaagaaa cgaaacaaaa agaaaaacct agagaaacag ccgaaaacaa acaaagtgtt 121 aaacgaacaa gccaacaaca aaccaaatac aagttaacca gaaacagaga atctgaaaac 181 gaaatccaaa gctaaattgc aacccagacg agccgcaaaa agcagcggta agttcagaga 241 ttcccgtctg agattcgctg agaagcagag cagacaggag ccgagtttgg agagacagga 301 cacaaaggag tcggagtcag agtcacagcc aaggacaagg atctcaaaag gagtgcgaac 361 aatgtgcgcc gcgctgcgtc gtaatttgtt gctgcggagc ctctgggtcg tcctggccat 421 tggcaccgct caggttcagg ccgcctcgcc acgatgggag ccccagatag ccgttctctg 481 cgaggccgga caaatctatc aaccgcaata tctttccgag gagggacgct ggatgacgga 541 cctcagcaag aagacaaccg gcgccacatg tttgcgtgat aaaatggatt tgcttgatta 601 ctgcaagaag gcctatccca atcgagacat tacgaacatt gtcgagtcat cccactacca 661 gaagatcggc ggctggtgtc gtcagggtgc tctaaatgcg gccaagtgca agggctccca 721 ccgctggatc aagccattcc gctgtctcga aggaccattc caatcggacg ccctgctggt 781 tcccgagggc tgcctcttcg atcacatcca caacgcctca cgctgctggc ccttcgtgag 841 gtggaaccaa accggagcgg ccgcttgcca ggagcgcgga atgcagatgc gcagcttcgc 901 catgctcctg ccctgcggca tctcggtctt ctccggcgtg gagttcgtct gctgtcccaa 961 gcacttcaag actgatgaaa tccatgtgaa aaagaccgac ctgccggtga tgccaccagc 1021 ccagatcacc agtgccaacg acgaactgat ggtgaatgac gaggacgata gcaatgactc 1081 gaattactca aaggatgcca atgacgacga gctggacgat gaggatgatc tgatgggcga 1141 tgatgaggag gacgagatgg tggcggatga ggcagctgcc gggggaggaa gtcccagcac 1201 cggatcgact ggcgatgcaa atagcggatc tctggatgat ataaatgcgg aatacgatag 1261 cggcgaggag ggtgacaact acgaggagga tggagctggt tccgagggcg aagccgaggg 1321 tgagacctcc tgggatcaga gcggaggatc taaggtggtg accctaaaga gtggtgcctc 1381 cgcctcggtg ccgtctagtg gtccggtttc agtttctgcc tcatctgaaa agacgcccgc 1441 aaaatcctct gatttggtca cgagcactcc tcagctttcc gccgccgccg ccgcagccgc 1501 cgcagctgct gcagcatctg tgaactctgg aaactcggga gtaggatctt ctaacggagg 1561 aggaggagcc ccaccatcca ccgcacagcc cacctcggac ccatacttca cccactttga 1621 tccgcactat gagcaccaga gctacaaagt aagtcagaaa gaagcccaac agcgccttga 1681 ggaatcgcat cgcgagaagg tcacgcgcgt gatgaaggac tggtcggatc tggaggagaa 1741 gtaccaggat atgcgcttgg cggaccccaa ggcagcccaa tcctttaagc agcggatgac 1801 ggctcgcttc cagacttctg ttcaggcact cgaggaagaa ggcaacgccg agaagcacca 1861 gctggccgcc atgcaccagc agcgcgtttt ggcccacatc aaccagcgga agcgggaggc 1921 catgacctgc tacacccagg ccctcaccga acagcccccg aacgcccacc atgttgagaa 1981 gtgcctgcaa aagttgctgc gcgccctgca caaggaccgt gcccatgctc tggcccacta 2041 ccgccacctg ttgaactctg gaggacccgg tggcctggag gcggctgcct cggagcgacc 2101 acgcactctg gagcgcctga tcgacatcga tcgtgctgtc aatcagtcga tgaccatgct 2161 caagcgctac ccggagctat cggccaagat tgcccagctg atgaacgatt atattttggc 2221 attgcgcagc aaggacgaca ttcccggctc gtcgctgggc atgagcgagg aggcggaggc 2281 cggcattctg gacaagtacc gcatcgagat cgagcgcaag gtggccgaga aggagcgact 2341 ccggctggcc gaaaagcagc gcaaggagca gcgggccgcc gagcgggaga aattgcgcga 2401 ggagaagctg cgtatggagg ccaagaaggt ggacgacatg ctcaagtcgc aggcggccga 2461 acagcagcag caatcgcagc agcagcagca gcagtccaat gcccagtcgt cgacccaatc 2521 gcaggcgcaa cagcagcagc aggagaagag cctcagcagc aaggagctgg gtctcgatgg 2581 cggattggtc acagcggcca atcttaactt ggacaccacc aagagcgaga aggagctgtc 2641 ggataccgag tacgccgagg caacagtaag cagcaccaag gtgcagaccg tgctgccaac 2701 ggtcgacgat gatgccgtcc agcgggcggt ggaggatgtg gccgctgccg ttgctcacca 2761 ggaggccgag ccgcaggtgc agcacttcat gacccacgat ctgggccacc gcgaatcggt 2821 atttgagctg cggcgccaac tcgtaccgca tttgcctaaa gcctatcccc tctctctctc 2881 tcccctctcg ttgcagagct tctcgctgcg tcgcgagttc gcgcagcatg cgcacgcggc 2941 caaggagggc cgcaatgtct acttcacgct ctccttcgcc ggcatcgccc tcatggcggc 3001 cgtctttgtg ggcgtggccg tggccaaatg gcggacatcg cgctcgccgc acgcccaggg 3061 cttcattgag gtcgatcaga acgtgaccac acaccatccc atcgtccagg aggagaagat 3121 cgtgcccaac atgcagatca atgggtacga gaatccgacc tacaaatatt tcgaagtgaa 3181 agagtaagcg ggacggcaag aggagcgcgg ctggctagag cgagagcgag aacgagaacg 3241 ccgagcgagc gagaggcaca catcaacagc aaaagcagaa gaaacagcag cagcagcaac 3301 cacaatttca aaatgaagaa acttaagcat aatattaaaa agcagatggg aagagaaatg 3361 attttttttt tcgtcaaaaa aggagcgcag ttccaataag gagaaacgag gggtagaaga 3421 agaaagataa attcaatgaa tggtaatata tctatatatt aaattaaagc aagcaagcag 3481 aaaggcaaga atataaagca agcaattaaa tttaagtatt tgaatgttta acaaaatgca 3541 gtaaacatcc tttctagctc tctatctctc tctctctctc ggtcttactc aaccactctg 3601 tccctttccc acacacacac ataactcatt acattcccac tttgtggttc ttgttgggcg 3661 ccaaataaaa agagagcaaa agaactaata gccaaagagg caagcgaaaa tccgtgcaaa 3721 ggaaagtcgg ataaaaagat tgaaagtaaa agcataaagc caaggacaag aatcacacac 3781 acccacacac aaaaggaaag gaggagcagg cggaggaggt ggagaaagaa aagagagcag 3841 aagaaaagca aatgcaaaac aaaagatatt cctagtaaat aaattgtcag cacacagaca 3901 cacattcaca tacaccgact cactcataga tacaggaaca gtcacacaca cacacacaca 3961 accacacacg cattcatggc tgcttcgtag catacttttg agcgtttcgt ggcgttgaaa 4021 tgcttgcaag ccgatcgcaa ttcttaccga caaaaaaact tacgccatta attagagccg 4081 cgctaaaagc taaaagaaga tgaaagctga aacacagata cacacactca cactgagaca 4141 cacatgtgaa cctaagagct acctacgcgt actaatctct atacgaacat gcatatgcgc 4201 ttatgtatat gtctaactct ctctctaaac cacactcaca ctcacacaca cacacgaaaa 4261 cacccagaca aacgcaaaga aagcaactgc aaaaacccaa caaattatat atacacatat 4321 atatatatat atacaatata tttaaagcaa agcaagaaga aatgtccata aatgtattta 4381 tgtatctata cacgagccac acaacccaaa aaggtcgaag gtcagccagc taaggggagc 4441 aggagaatta cgatgcttgg caggctatga aattaatata tgaatcagct acgtaaaca