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LOCUS XM_070218869 4545 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_070218869 VERSION XM_070218869.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4545 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4545 /gene="Appl" /note="amyloid-beta-like protein; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108058164" CDS 408..3233 /gene="Appl" /codon_start=1 /product="amyloid-beta-like protein isoform X1" /protein_id="XP_070074970.1" /db_xref="GeneID:108058164" /translation="MCAALRRNLLLRSLWVVLAIGTAQVQAASPRWEPQIAVLCEAGQ IYQPQYLSEEGRWMTDLSKKTTGATCLRDKMDLLDYCKKAYPNRDITNIVESSHYQKI GGWCRQGALNAAKCKGSHRWIKPFRCLEGPFQSDALLVPEGCLFDHIHNASRCWPFVR WNQTGAAACQERGMQMRSFAMLLPCGISVFSGVEFVCCPKHFKTDEIHVKKTDLPVMP PAQITSANDELMVNDEDDSNDSNYSKDANDDELDDEDDLMGDDEEDEMVADEAAAGGG SPSTGSTGDANSGSLDDINAEYDSGEEGDNYEEDGAGSEGEAEGETSWDQSGGSKVVT LKSGASASVPSSGPVSVSASSEKTPAKSSDLVTSTPQLSAAAAAAAAAAAASVNSGNS GVGSSNGGGGAPPSTAQPTSDPYFTHFDPHYEHQSYKVSQKEAQQRLEESHREKVTRV MKDWSDLEEKYQDMRLADPKAAQSFKQRMTARFQTSVQALEEEGNAEKHQLAAMHQQR VLAHINQRKREAMTCYTQALTEQPPNAHHVEKCLQKLLRALHKDRAHALAHYRHLLNS GGPGGLEAAASERPRTLERLIDIDRAVNQSMTMLKRYPELSAKIAQLMNDYILALRSK DDIPGSSLGMSEEAEAGILDKYRIEIERKVAEKERLRLAEKQRKEQRAAEREKLREEK LRMEAKKVDDMLKSQAAEQQQQSQQQQQQSNAQSSTQSQAQQQQQEKSLSSKELGLDG GLVTAANLNLDTTKSEKELSDTEYAEATVSSTKVQTVLPTVDDDAVQRAVEDVAAAVA HQEAEPQVQHFMTHDLGHRESVFELRRQLVPHLPKAYPLSLSPLSLQSFSLRREFAQH AHAAKEGRNVYFTLSFAGIALMAAVFVGVAVAKWRTSRSPHAQGFIEVDQNVTTHHPI VQEEKIVPNMQINGYENPTYKYFEVKE" misc_feature 483..1004 /gene="Appl" /note="amyloid A4; Region: A4_EXTRA; smart00006" /db_xref="CDD:128326" misc_feature <1074..>1493 /gene="Appl" /note="MSCRAMM family adhesin clumping factor ClfA; Region: MSCRAMM_ClfA; NF033609" /db_xref="CDD:468110" misc_feature 1617..2207 /gene="Appl" /note="E2 domain of amyloid precursor protein; Region: APP_E2; pfam12925" /db_xref="CDD:463752" misc_feature 2361..>2477 /gene="Appl" /note="DDRGK domain; Region: DDRGK; pfam09756" /db_xref="CDD:370664" misc_feature 3072..3221 /gene="Appl" /note="Beta-amyloid precursor protein C-terminus; Region: APP_amyloid; pfam10515" /db_xref="CDD:463129" polyA_site 4545 /gene="Appl" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 atcaactgaa atcactgaaa caaaatataa gctaaaatac attttttttt tgttgttcca 61 agtgcaaagt gttaaaaaga gaaaacccca aagagaaaca aagaagaaga aagaaacgaa 121 acaaaaagaa aaacctagag aaacagccga aaacaaacaa agtgttaaac gaacaagcca 181 acaacaaacc aaatacaagt taaccagaaa cagagaatct gaaaacgaaa tccaaagcta 241 aattgcaacc cagacgagcc gcaaaaagca gcggtaagtt cagagattcc cgtctgagat 301 tcgctgagaa gcagagcaga caggagccga gtttggagag acaggacaca aaggagtcgg 361 agtcagagtc acagccaagg acaaggatct caaaaggagt gcgaacaatg tgcgccgcgc 421 tgcgtcgtaa tttgttgctg cggagcctct gggtcgtcct ggccattggc accgctcagg 481 ttcaggccgc ctcgccacga tgggagcccc agatagccgt tctctgcgag gccggacaaa 541 tctatcaacc gcaatatctt tccgaggagg gacgctggat gacggacctc agcaagaaga 601 caaccggcgc cacatgtttg cgtgataaaa tggatttgct tgattactgc aagaaggcct 661 atcccaatcg agacattacg aacattgtcg agtcatccca ctaccagaag atcggcggct 721 ggtgtcgtca gggtgctcta aatgcggcca agtgcaaggg ctcccaccgc tggatcaagc 781 cattccgctg tctcgaagga ccattccaat cggacgccct gctggttccc gagggctgcc 841 tcttcgatca catccacaac gcctcacgct gctggccctt cgtgaggtgg aaccaaaccg 901 gagcggccgc ttgccaggag cgcggaatgc agatgcgcag cttcgccatg ctcctgccct 961 gcggcatctc ggtcttctcc ggcgtggagt tcgtctgctg tcccaagcac ttcaagactg 1021 atgaaatcca tgtgaaaaag accgacctgc cggtgatgcc accagcccag atcaccagtg 1081 ccaacgacga actgatggtg aatgacgagg acgatagcaa tgactcgaat tactcaaagg 1141 atgccaatga cgacgagctg gacgatgagg atgatctgat gggcgatgat gaggaggacg 1201 agatggtggc ggatgaggca gctgccgggg gaggaagtcc cagcaccgga tcgactggcg 1261 atgcaaatag cggatctctg gatgatataa atgcggaata cgatagcggc gaggagggtg 1321 acaactacga ggaggatgga gctggttccg agggcgaagc cgagggtgag acctcctggg 1381 atcagagcgg aggatctaag gtggtgaccc taaagagtgg tgcctccgcc tcggtgccgt 1441 ctagtggtcc ggtttcagtt tctgcctcat ctgaaaagac gcccgcaaaa tcctctgatt 1501 tggtcacgag cactcctcag ctttccgccg ccgccgccgc agccgccgca gctgctgcag 1561 catctgtgaa ctctggaaac tcgggagtag gatcttctaa cggaggagga ggagccccac 1621 catccaccgc acagcccacc tcggacccat acttcaccca ctttgatccg cactatgagc 1681 accagagcta caaagtaagt cagaaagaag cccaacagcg ccttgaggaa tcgcatcgcg 1741 agaaggtcac gcgcgtgatg aaggactggt cggatctgga ggagaagtac caggatatgc 1801 gcttggcgga ccccaaggca gcccaatcct ttaagcagcg gatgacggct cgcttccaga 1861 cttctgttca ggcactcgag gaagaaggca acgccgagaa gcaccagctg gccgccatgc 1921 accagcagcg cgttttggcc cacatcaacc agcggaagcg ggaggccatg acctgctaca 1981 cccaggccct caccgaacag cccccgaacg cccaccatgt tgagaagtgc ctgcaaaagt 2041 tgctgcgcgc cctgcacaag gaccgtgccc atgctctggc ccactaccgc cacctgttga 2101 actctggagg acccggtggc ctggaggcgg ctgcctcgga gcgaccacgc actctggagc 2161 gcctgatcga catcgatcgt gctgtcaatc agtcgatgac catgctcaag cgctacccgg 2221 agctatcggc caagattgcc cagctgatga acgattatat tttggcattg cgcagcaagg 2281 acgacattcc cggctcgtcg ctgggcatga gcgaggaggc ggaggccggc attctggaca 2341 agtaccgcat cgagatcgag cgcaaggtgg ccgagaagga gcgactccgg ctggccgaaa 2401 agcagcgcaa ggagcagcgg gccgccgagc gggagaaatt gcgcgaggag aagctgcgta 2461 tggaggccaa gaaggtggac gacatgctca agtcgcaggc ggccgaacag cagcagcaat 2521 cgcagcagca gcagcagcag tccaatgccc agtcgtcgac ccaatcgcag gcgcaacagc 2581 agcagcagga gaagagcctc agcagcaagg agctgggtct cgatggcgga ttggtcacag 2641 cggccaatct taacttggac accaccaaga gcgagaagga gctgtcggat accgagtacg 2701 ccgaggcaac agtaagcagc accaaggtgc agaccgtgct gccaacggtc gacgatgatg 2761 ccgtccagcg ggcggtggag gatgtggccg ctgccgttgc tcaccaggag gccgagccgc 2821 aggtgcagca cttcatgacc cacgatctgg gccaccgcga atcggtattt gagctgcggc 2881 gccaactcgt accgcatttg cctaaagcct atcccctctc tctctctccc ctctcgttgc 2941 agagcttctc gctgcgtcgc gagttcgcgc agcatgcgca cgcggccaag gagggccgca 3001 atgtctactt cacgctctcc ttcgccggca tcgccctcat ggcggccgtc tttgtgggcg 3061 tggccgtggc caaatggcgg acatcgcgct cgccgcacgc ccagggcttc attgaggtcg 3121 atcagaacgt gaccacacac catcccatcg tccaggagga gaagatcgtg cccaacatgc 3181 agatcaatgg gtacgagaat ccgacctaca aatatttcga agtgaaagag taagcgggac 3241 ggcaagagga gcgcggctgg ctagagcgag agcgagaacg agaacgccga gcgagcgaga 3301 ggcacacatc aacagcaaaa gcagaagaaa cagcagcagc agcaaccaca atttcaaaat 3361 gaagaaactt aagcataata ttaaaaagca gatgggaaga gaaatgattt tttttttcgt 3421 caaaaaagga gcgcagttcc aataaggaga aacgaggggt agaagaagaa agataaattc 3481 aatgaatggt aatatatcta tatattaaat taaagcaagc aagcagaaag gcaagaatat 3541 aaagcaagca attaaattta agtatttgaa tgtttaacaa aatgcagtaa acatcctttc 3601 tagctctcta tctctctctc tctctcggtc ttactcaacc actctgtccc tttcccacac 3661 acacacataa ctcattacat tcccactttg tggttcttgt tgggcgccaa ataaaaagag 3721 agcaaaagaa ctaatagcca aagaggcaag cgaaaatccg tgcaaaggaa agtcggataa 3781 aaagattgaa agtaaaagca taaagccaag gacaagaatc acacacaccc acacacaaaa 3841 ggaaaggagg agcaggcgga ggaggtggag aaagaaaaga gagcagaaga aaagcaaatg 3901 caaaacaaaa gatattccta gtaaataaat tgtcagcaca cagacacaca ttcacataca 3961 ccgactcact catagataca ggaacagtca cacacacaca cacacaacca cacacgcatt 4021 catggctgct tcgtagcata cttttgagcg tttcgtggcg ttgaaatgct tgcaagccga 4081 tcgcaattct taccgacaaa aaaacttacg ccattaatta gagccgcgct aaaagctaaa 4141 agaagatgaa agctgaaaca cagatacaca cactcacact gagacacaca tgtgaaccta 4201 agagctacct acgcgtacta atctctatac gaacatgcat atgcgcttat gtatatgtct 4261 aactctctct ctaaaccaca ctcacactca cacacacaca cgaaaacacc cagacaaacg 4321 caaagaaagc aactgcaaaa acccaacaaa ttatatatac acatatatat atatatatac 4381 aatatattta aagcaaagca agaagaaatg tccataaatg tatttatgta tctatacacg 4441 agccacacaa cccaaaaagg tcgaaggtca gccagctaag gggagcagga gaattacgat 4501 gcttggcagg ctatgaaatt aatatatgaa tcagctacgt aaaca