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LOCUS XM_070218859 4192 bp mRNA linear INV 09-DEC-2024 alpha3 (nAChRalpha3), transcript variant X2, mRNA. ACCESSION XM_070218859 VERSION XM_070218859.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4192 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4192 /gene="nAChRalpha3" /note="nicotinic Acetylcholine Receptor alpha3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 93 Proteins" /db_xref="GeneID:108054798" CDS 915..3314 /gene="nAChRalpha3" /codon_start=1 /product="acetylcholine receptor subunit alpha-like" /protein_id="XP_070074960.1" /db_xref="GeneID:108054798" /translation="MKWFQVTIDMILVLSFISSSTANPDAKRLYDDLLSNYNKLVRPV VNVTDALTVRIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLKWEPKEYGGVEMLHV PSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWRPPAIYKSSCEIDVEYFPFD EQTCVMKFGSWTYDGFQVDLRHIDELNGTNVVEVGVDLSEFYTSVEWDILEVPAVRNE KFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLS ISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVLVLNIHFRSPQ THTMAPWVRTVFINQLPRFLVMRRPLYPISEMIKSSRRLMVRTCNGLELRDQIPPLPP PVALSRMHHSPKTTSRSTSPHLQHRAQTYNLMDECGMGGMGGMGGGGGASTITGHLSS LYPPTMSTANQQTSTTSSLIDAQYHNQYQQTGGSLLDHPLTPTKFRQMTSTSSQTGQN GNGNGGGNGGGGGGYGGHNLYRQQSSCSANFSPLPQHAHQAHASTTTSDLGMANPNVI KSTTTVNSVATASTLAESCCSGTIQIHQGMGAGAACQSSELLHHQQLHHQQMHHQQQQ QQYQQRPTTSAAAAAAAAAAAAAAGGGPSTSAAAAAAAAAAAAGTPPPPPPPAGVCDI LPACQREGGPHCCSGRGNVRQRWHTCPELHKAMDGVTYIADQTRKEEESTRVKEDWKY VAMVLDRLFLWIFTIAVVVGTAGIILQAPTLYDTRMPIDIKLSEIASTTAKPNVARPV L" misc_feature 987..1643 /gene="nAChRalpha3" /note="extracellular domain of nicotinic acetylcholine receptor subunit alpha-like found in protostomia; Region: LGIC_ECD_nAChR_proto_alpha-like; cd19031" /db_xref="CDD:349832" misc_feature order(1095..1097,1101..1103,1119..1124,1143..1145, 1209..1211,1215..1217,1242..1247,1251..1253,1257..1262, 1272..1274,1278..1283,1293..1301,1305..1307,1335..1337, 1341..1343,1347..1349,1359..1361,1425..1427,1632..1634) /gene="nAChRalpha3" /note="pentamer interface [polypeptide binding]; other site" /db_xref="CDD:349832" misc_feature 1362..1406 /gene="nAChRalpha3" /note="Cys-loop [structural motif]; Region: Cys-loop" /db_xref="CDD:349832" misc_feature 1638..>1907 /gene="nAChRalpha3" /note="transmembrane domain of nicotinic acetylcholine receptor (nAChR); Region: LGIC_TM_nAChR; cd19064" /db_xref="CDD:349866" misc_feature 1638..1712 /gene="nAChRalpha3" /note="TM1 helix [structural motif]; Region: TM1 helix" /db_xref="CDD:349866" misc_feature order(1734..1736,1743..1745,1755..1757,1764..1769, 1776..1778,1788..1790,1872..1874,1881..1883,1890..1895, 1899..1907) /gene="nAChRalpha3" /note="pentamer interface [polypeptide binding]; other site" /db_xref="CDD:349866" misc_feature 1734..1799 /gene="nAChRalpha3" /note="TM2 helix [structural motif]; Region: TM2 helix" /db_xref="CDD:349866" misc_feature 1830..1898 /gene="nAChRalpha3" /note="TM3 helix [structural motif]; Region: TM3 helix" /db_xref="CDD:349866" misc_feature <2973..3206 /gene="nAChRalpha3" /note="Neurotransmitter-gated ion-channel transmembrane region; Region: Neur_chan_memb; pfam02932" /db_xref="CDD:460753" ORIGIN 1 gtgttggtgt gttgtgtctg tgtcgcgcat gtgaccgcct cagctaaaaa accaggctga 61 aacttcaaaa caaatattgg aaaattccga taaaaaaggt ggcttgtaag ccgaaggaac 121 cgaatgcaaa ttgaaaacta aagttcgagg aagccagaaa ccaaaacaag gaagcgagct 181 cctgtccgtg tgaaggacga cgtcggtctg tgtgcgtgtg tgtgggtgcg gggacaccac 241 tacagcggca gacgaaatac tttttgtgcc aaggactcgc tccaccaccc agccctctcc 301 ctttccactc ttcgcggaac aaagaacaga tggaggagga gcccaggaat gaggcgatgt 361 gaagcaaaag gacaacgagg acaacaagga gcaaaacaaa ggcaaggccg ggaggaggcc 421 actaaaagga gaacatacat ttgaagaatt ttaatcgaaa actgccaaga aacaaatata 481 tttacaaata tatttatata tagataccta gtaaaccaaa acgtacatac aaacataaac 541 ataaatataa atataaatat atatatatta tatagagaga aatatgttat atttactatg 601 gaaacgatac ccagaataat aatcgatgta aataaatgct gccaattcga ggacactgcg 661 aattaaaacc gcaactgaga tgcataaaac gcacaacaac aacatcaaga gaaacccgca 721 tgagaaacac atgaagaaaa ggttcacttc tcccgcgaca gccgcgcctg cgccctaaaa 781 tcgatcggtc tggatatcga atatatcgat aatatcgaaa gaggaacatt cggaggagcc 841 gccagaaggg gattacatat agggcagatc caccaccgca gcacaggcag aaaaagcgtg 901 cagagggaaa tgagatgaag tggtttcaag tgaccataga tatgattctt gtgctttcat 961 ttatatcaag cagcacagcg aatccggatg cgaaacgatt gtacgacgat ttgctgagca 1021 actacaacaa actggtccgc ccggtggtca atgtgacgga cgccctcacc gttcgcatca 1081 agctgaagct ctcccaactg atcgatgtca acctgaagaa ccagatcatg accaccaacc 1141 tgtgggtgga gcagtcctgg tacgactaca agctcaagtg ggagcccaag gagtacggcg 1201 gcgtcgagat gctccacgtc ccctccgatc acatttggcg tccggacatc gtcctctaca 1261 acaacgccga cggcaacttt gaggtgaccc tggccaccaa ggccacgcta aattacacgg 1321 gacgcgtcga gtggcgaccg ccggccattt acaagagctc ctgcgagatc gacgtggagt 1381 actttccctt cgacgagcag acctgcgtga tgaagttcgg cagctggacc tacgacggct 1441 ttcaggtgga tctgcggcac atcgacgagc tgaacggcac caatgtcgtg gaggtgggcg 1501 tggatctgtc cgagttctac acgtccgtcg aatgggatat cctcgaagtt cctgcagtgc 1561 ggaacgagaa gttctatacg tgctgcgatg agccatatct ggacatcacc ttcaacatca 1621 cgatgcgccg caagaccctt ttctacacgg tcaacctgat catcccctgc atgggcatta 1681 gcttcctcac catcctcgtg ttctacctgc catcggacag tggcgagaag gtctcattaa 1741 gcatatccat tctgctgtcg ctcactgtgt tcttcctgct cctggcggaa atcattccgc 1801 ccacatcgct ggtggtgccg ctgctgggaa agttcgtgct cttcaccatg atactggata 1861 ccttcagcat ctgtgtgact gtgttggtgc tgaacatcca cttccggtcg ccgcagacgc 1921 acacgatggc tccttgggtg cggaccgtgt tcatcaacca gctgccccgc ttcctggtca 1981 tgcggcgtcc gctctatccg atcagcgaga tgataaaatc ctcgcgccgc ctaatggtgc 2041 gcacctgcaa cggactcgaa ctgagggatc aaataccacc gctgccaccg ccggtggcct 2101 tgtctcgtat gcaccacagc ccgaagacga catcgcgcag cacctcgccc cacctgcagc 2161 accgcgcgca gacctacaac ctgatggacg agtgcggcat ggggggcatg gggggcatgg 2221 gcgggggagg gggcgcctcc acgatcaccg gccacctgag ctccctgtat ccgccgacga 2281 tgtcgacggc caaccagcag acctcgacca cgtcctcgct gatcgacgcc cagtaccaca 2341 atcagtacca gcagacgggc ggctcgctgc tggaccaccc actgacgccc accaagttcc 2401 gccagatgac ctcgacctcc agccagacgg gtcagaatgg gaatgggaat ggcggaggga 2461 acgggggcgg tggcggtggc tacgggggcc acaacctgta ccggcagcag tcgagctgct 2521 cggccaactt ctcgccgctg ccgcagcacg cccaccaggc gcacgcctcc accaccacca 2581 gcgacctggg catggccaat ccgaatgtga taaagtcgac gacgacggtt aactcggtgg 2641 ccaccgcctc cacgctggcg gagtcctgct gcagcggcac catccagatc caccagggca 2701 tgggcgccgg ggcggcctgc cagtcgtcgg agctgctgca ccaccagcag ttgcaccacc 2761 agcagatgca ccaccagcag cagcagcagc agtaccagca acgacccacc acctcggcag 2821 cagcggcggc agcggcagcg gcggcggcgg cggcagcagg aggcggaccc agcacctcgg 2881 cggcggcagc agcggcggca gcggcagcgg cggccggaac gccaccccca ccgcctccgc 2941 cggcgggcgt ctgtgatatt ctgcccgcct gccagcgcga gggcggcccg cactgctgct 3001 cggggcgtgg caacgtgcgc cagaggtggc acacctgccc cgagctccac aaggccatgg 3061 acggggtcac ctacatcgcg gatcagacgc gcaaggagga ggagagcaca agggtgaaag 3121 aggactggaa gtacgtggcc atggtgctcg accgcctgtt cctgtggatc ttcacaatag 3181 ccgtggtcgt cggcaccgcc ggcatcatcc tgcaggctcc gacgctctac gacacccgga 3241 tgcccatcga cataaagcta tcggagatcg cctcgacgac ggccaagccc aatgtggcca 3301 ggcccgtgtt gtaagcgtat cgatatgtat cgatccgtcg atcgatatcc agtattccgg 3361 agaacacaca ccacacacag tctgaagaag ccaacaaaag caaaacacaa gtaatgaatg 3421 aaattcgcat ttgttttttc tttaaccaga gagaaagggg atacaaaacc aaaaaaaaaa 3481 ataattacca aaaaaacttg ttccacaaaa acagaataac agaaacgacg acgagaatcc 3541 aagtaactat aactataata aattgtattt gttgtataca taaaaggtat aactaactat 3601 aaataatttg tacactaatg tttaaacagg caaacgatgc taaacaaaac ggtttttttt 3661 tctaggcaac gtaaatgaac agagacaaaa aagtgacgac aaaacaaaaa accaaacaaa 3721 cgaacaaaat aagtaagtaa accaattcaa ctgaaacgaa gcgcaaaata gtatgcaaca 3781 gataaataaa tacgatttat ggtaataatt gagagcgaaa ttaaattagt gaaattaaat 3841 tagcctagcc aaacatcaag aataacgaaa taatgcaaaa aaaaaaagaa agaaaaagaa 3901 agcgtatttg ttgaacaaga aaacgaagag aagggggaca acattagtta gctaagcgaa 3961 ccaaaataaa ggaacaggaa aaagccaaca aaaaaggcgt atatgtatat gtatgttttt 4021 gtgcaccgag agaaagcgga ggaaagaaac cgaaaattca gtgatttaaa aagttttctg 4081 cccctggaaa taatattcaa cctacagatc catttaaata acctaaaata ataattttaa 4141 tattttgtat atattttata agtttttata taaaatgttg caaacaaaac tt