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LOCUS XM_070218846 3389 bp mRNA linear INV 09-DEC-2024 (LOC108065693), transcript variant X4, mRNA. ACCESSION XM_070218846 VERSION XM_070218846.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3389 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3389 /gene="LOC108065693" /note="autotransporter adhesin BpaC; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108065693" CDS 542..3085 /gene="LOC108065693" /codon_start=1 /product="autotransporter adhesin BpaC isoform X3" /protein_id="XP_070074947.1" /db_xref="GeneID:108065693" /translation="MMTMTAASASISASTSASASITNSASTDCSSSMQGSTTSSASSD VMTLTTTAASSWCAIPASSRLRVLRLVRPHQRRLLVGGPERGSTYGFAVRGGREHGTG FFVSHVEHGGEAQLKGLRIGDQILRINGFRLDDAVHKEFIQLVAGQDRVTLKVRGVGM LPVRDQPEERLSWSVVKLPSVSGTPSESSFKGERRGGASRDISVVLHVAPRTKLGLGI CKGPEWKPGIFVQFTKERSVAREAGLRPGDQILSVNSIDFSDVLFSEAVAVMKSSSKL DMVVRTAAGCDLFPGESSGYNSSASSVTGDQSPCWADAKSKRLTAVREESAGGGSGSG NGSTNWSQGVEVHKQMNKTIIKLTENGTSINNTYIASNSVSGSGSGSGSSASGTSGRS LQSQSNPSRNSTTMKRSHLRPVNTAGLAGGSGSGLGGVIAAPAPPPPAINEGACTSGS AGSSLSSAITEELKKRKEQQQQQHQQRNNRDRDRDRDENGNVDRQLAGHNGNGNGGGN GNGGGNGSGSGGHRSSGGQVSHRQRANVAGVAATLQSSERISNLGGGGGGGGGGGGAG GSNGAGGDQHTALMDEFKRAHQRMFRNGFHESEHKERVETLKRTSIMPDESCYRNSIN SNGFSSNRSNSNGSSNVNSNPSNSNSSDTSNNNRLQPQNGFSPANGNGSPELPPPPPQ FANPQPKQMPPQQLKLITGNGAANGNGSGGGGGIGLGNGSLAKVKQPMSPMRSASISV GGFRPPATPQPDYDAVQLRSPTGTGSGSGSGSGSTSQQQRRTLRLGTVTIGEYGDPRT TATGKRETLRKTNGEPGSNGILKNGTNRSSASFNHGSSHQPEKSIKFGN" misc_feature 767..1018 /gene="LOC108065693" /note="PDZ domain 1 of harmonin isoforms a, b, and c, and related domains; Region: PDZ1_harmonin; cd06737" /db_xref="CDD:467219" misc_feature order(803..823,857..859,866..868,953..955,965..967, 974..979) /gene="LOC108065693" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467219" misc_feature 1139..1384 /gene="LOC108065693" /note="canonical PDZ domain; Region: PDZ_canonical; cl49608" /db_xref="CDD:483948" misc_feature order(1178..1198,1232..1234,1241..1243,1328..1330, 1340..1342,1349..1354) /gene="LOC108065693" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467153" polyA_site 3389 /gene="LOC108065693" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tgccgcctca atttgtcgtc gcctctcgcg agattcacgt cgtcagtgcg gaaaagcccg 61 ttcccagaac aagtacctcc cacatatttc gttttccatt tttccgaaaa gaaaaacaaa 121 cggaaaatcg cgatcgttgc cggcttaaaa aataaatata tcgaagcgcg tgtgtttttt 181 ggcatttgtt tctttttttt ctggagtgca ctcgattttg gggccagcaa aagtgctgaa 241 agtgctcgcg ggctcacaaa acgctgctgc acctgtctca cctgagcgct tcaagccaca 301 aaagtgtaaa gtgcagcgcg actctttgct gttccgtcgt ttttatttat ttgttttttg 361 cttcgcgatt tcgagatccc cgagattcag caagaattct gcgagcgtaa gcgagtgttt 421 tgatactgct gccgcgctct aattgccagg tttcgtgtgt agaattcttc ggccgcttct 481 ttttcttctt cttgggacgc ccgcaccgca aatgagctgc ctgtgaagaa gccccaacaa 541 aatgatgacg atgacagcag cctcggcctc gatatccgca tccacatccg catcggcatc 601 gataacaaat tcggcgtcga cggactgcag cagcagcatg cagggatcga cgaccagctc 661 ggcgtccagc gatgtgatga ccctgacgac cacggcggcc tcctcgtggt gcgccattcc 721 ggcgagctcc cgcctgcggg tcctgcgcct ggtcaggcct caccagcggc gtctgctggt 781 cggcggaccg gagaggggca gcacctacgg attcgcggtg cgcggcggta gggagcacgg 841 caccggtttc tttgtgtccc acgtggagca cggcggcgag gcgcagttga agggtctgcg 901 gattggcgac cagatcctgc ggatcaacgg ctttcgcctg gacgatgccg tgcacaagga 961 gttcatccaa ctggtggctg gccaggatcg ggtcacgctg aaggtgcgcg gcgtgggaat 1021 gctgccagtg agggaccaac cggaggagcg tttgtcctgg agcgtggtca agttgcccag 1081 tgtgagtggc actccctcgg agagttcctt caagggcgag cgacgcggcg gcgccagccg 1141 ggacatcagt gtggtgctcc atgtggcgcc caggacgaag ctgggcctgg gcatttgcaa 1201 gggtcccgaa tggaagcccg gcatctttgt gcagttcacc aaggagcgga gtgtcgcaag 1261 ggaagcgggt ctgcgcccgg gtgaccagat actcagcgtg aacagcatcg acttctccga 1321 tgtgctcttc agcgaggcgg tggccgtgat gaagagcagc agcaagctgg acatggtggt 1381 gcgcacggcg gcgggatgtg acctcttccc aggcgaatcg agtggctaca acagctcggc 1441 cagctcggtg acgggcgatc agagtccctg ctgggcggat gccaagtcca agagattgac 1501 ggcggtcagg gaggagtccg ccggaggagg atcaggatcg ggaaatggta gcaccaactg 1561 gtcgcagggc gtcgaggtgc acaagcagat gaacaagacc atcatcaagc tgacggagaa 1621 tggtacctcc ataaacaaca cctacatagc cagtaattcc gtttccggtt ctggttctgg 1681 ttctggttcc tccgccagcg gaacttccgg tcgcagcctg caatcgcaat cgaatccttc 1741 ccgcaattca actaccatga agcgcagcca cctaaggcca gttaatactg cgggattagc 1801 aggcggatca ggatcgggat taggaggagt cattgctgca cctgctccac cgccaccggc 1861 catcaatgag ggagcctgta ccagcggctc agctggcagc agtctctcca gtgccataac 1921 cgaggagctc aagaagcgca aagagcagca gcagcagcaa catcagcagc gcaacaatcg 1981 cgatcgagat agagatcgag atgaaaatgg aaacgtggat cgtcagctgg cggggcacaa 2041 tggaaatgga aatggaggtg gaaatggaaa tggaggtgga aatggaagtg gaagtggagg 2101 ccaccgcagc tccggcggac aagtgtcgca tcgccagcgg gcgaatgttg ctggcgtggc 2161 tgcaacattg cagagcagcg aacgcatcag caatttggga ggcggcggcg gaggaggagg 2221 aggaggagga ggagcgggtg gatccaatgg agctggcgga gatcagcaca cggcgctgat 2281 ggacgaattc aagcgggcgc accagcgaat gttcaggaac gggttccatg agagcgagca 2341 caaggagcgc gttgaaacgc tgaaacgcac ctcgattatg cccgatgaga gctgttatcg 2401 gaatagtatc aacagcaacg gcttcagcag caacaggagc aacagcaacg gcagcagcaa 2461 cgtcaacagc aacccgagca acagcaacag cagcgacacg agcaacaata atcgcctgca 2521 gccacaaaac ggatttagtc cggcgaacgg caatggatcg ccggaacttc cgccaccgcc 2581 accacagttc gccaatcccc agccaaagca gatgccgccc cagcagctca agctgatcac 2641 cggaaatgga gcggcgaacg gaaacggaag tggaggtgga ggtgggatag gactgggcaa 2701 cggcagcttg gccaaggtca agcagcccat gtcgcccatg cgcagtgcca gcatcagtgt 2761 gggcggattc cggccaccag ccacgcccca gcccgactac gatgcagtcc aactgagatc 2821 gcccacggga acaggatcgg gatcgggatc aggatcggga tccacgagtc agcagcagag 2881 aagaaccctg cgattgggca cggtgaccat cggggagtac ggagatccga ggacgacggc 2941 gacgggaaag cgggaaacgc tgcgcaaaac gaacggggag ccgggctcca atgggatcct 3001 aaagaacgga accaaccgga gcagcgccag cttcaatcac ggctcctccc accagccgga 3061 aaagtccatc aagttcggca actgattgat ataacccgaa tatatatata tttacctttg 3121 tgcaatatgc tcgatgattg aggagagtac aaacaaatcg gacgtgcagc ggctttccat 3181 atgcatatac tacatatcta tcatatccat tatcttatat catttttttt ttttgcttac 3241 ttctaacttt tattgtattt ttttgaaacg atttgttgga aatattctat cactagttgc 3301 tattatttaa cgaacactgt aaataaacca ctggcgagtg tgtgtgcgag tgtttccaat 3361 aaagcatata tatatatgta tgtacctta