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LOCUS XM_070218845 3392 bp mRNA linear INV 09-DEC-2024 (LOC108065693), transcript variant X3, mRNA. ACCESSION XM_070218845 VERSION XM_070218845.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3392 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3392 /gene="LOC108065693" /note="autotransporter adhesin BpaC; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108065693" CDS 542..3088 /gene="LOC108065693" /codon_start=1 /product="autotransporter adhesin BpaC isoform X2" /protein_id="XP_070074946.1" /db_xref="GeneID:108065693" /translation="MMTMTAASASISASTSASASITNSASTDCSSSMQGSTTSSASSD VMTLTTTAASSWCAIPASSRLRVLRLVRPHQRRLLVGGPERGSTYGFAVRGGREHGTG FFVSHVEHGGEAQLKGLRIGDQILRINGFRLDDAVHKEFIQLVAGQDRVTLKVRGVGM LPVRDQPEERLSWSVVKLPSVSGTPSESSFKGERRGGASRDISVVLHVAPRTKLGLGI CKGPEWKPGIFVQFTKERSVAREAGLRPGDQILSVNSIDFSDVLFSEAVAVMKSSSKL DMVVRTAAGCDLFPGESSGYNSSASSVTGDQSPCWADAKSKRLTAVREESAGGGSGSG NGSTNWSQGVEVHKQMNKTIIKLTENGTSINNTYIASNSVSGSGSGSGSSASGTSGRS LQSQSNPSRNSTTMKRSHLRPVNTAGLAGGSGSGLGGVIAAPAPPPPAINEGACTSGS AGSSLSSAITEELKKRKEQQQQQQHQQRNNRDRDRDRDENGNVDRQLAGHNGNGNGGG NGNGGGNGSGSGGHRSSGGQVSHRQRANVAGVAATLQSSERISNLGGGGGGGGGGGGA GGSNGAGGDQHTALMDEFKRAHQRMFRNGFHESEHKERVETLKRTSIMPDESCYRNSI NSNGFSSNRSNSNGSSNVNSNPSNSNSSDTSNNNRLQPQNGFSPANGNGSPELPPPPP QFANPQPKQMPPQQLKLITGNGAANGNGSGGGGGIGLGNGSLAKVKQPMSPMRSASIS VGGFRPPATPQPDYDAVQLRSPTGTGSGSGSGSGSTSQQQRRTLRLGTVTIGEYGDPR TTATGKRETLRKTNGEPGSNGILKNGTNRSSASFNHGSSHQPEKSIKFGN" misc_feature 767..1018 /gene="LOC108065693" /note="PDZ domain 1 of harmonin isoforms a, b, and c, and related domains; Region: PDZ1_harmonin; cd06737" /db_xref="CDD:467219" misc_feature order(803..823,857..859,866..868,953..955,965..967, 974..979) /gene="LOC108065693" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467219" misc_feature 1139..1384 /gene="LOC108065693" /note="canonical PDZ domain; Region: PDZ_canonical; cl49608" /db_xref="CDD:483948" misc_feature order(1178..1198,1232..1234,1241..1243,1328..1330, 1340..1342,1349..1354) /gene="LOC108065693" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467153" polyA_site 3392 /gene="LOC108065693" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tgccgcctca atttgtcgtc gcctctcgcg agattcacgt cgtcagtgcg gaaaagcccg 61 ttcccagaac aagtacctcc cacatatttc gttttccatt tttccgaaaa gaaaaacaaa 121 cggaaaatcg cgatcgttgc cggcttaaaa aataaatata tcgaagcgcg tgtgtttttt 181 ggcatttgtt tctttttttt ctggagtgca ctcgattttg gggccagcaa aagtgctgaa 241 agtgctcgcg ggctcacaaa acgctgctgc acctgtctca cctgagcgct tcaagccaca 301 aaagtgtaaa gtgcagcgcg actctttgct gttccgtcgt ttttatttat ttgttttttg 361 cttcgcgatt tcgagatccc cgagattcag caagaattct gcgagcgtaa gcgagtgttt 421 tgatactgct gccgcgctct aattgccagg tttcgtgtgt agaattcttc ggccgcttct 481 ttttcttctt cttgggacgc ccgcaccgca aatgagctgc ctgtgaagaa gccccaacaa 541 aatgatgacg atgacagcag cctcggcctc gatatccgca tccacatccg catcggcatc 601 gataacaaat tcggcgtcga cggactgcag cagcagcatg cagggatcga cgaccagctc 661 ggcgtccagc gatgtgatga ccctgacgac cacggcggcc tcctcgtggt gcgccattcc 721 ggcgagctcc cgcctgcggg tcctgcgcct ggtcaggcct caccagcggc gtctgctggt 781 cggcggaccg gagaggggca gcacctacgg attcgcggtg cgcggcggta gggagcacgg 841 caccggtttc tttgtgtccc acgtggagca cggcggcgag gcgcagttga agggtctgcg 901 gattggcgac cagatcctgc ggatcaacgg ctttcgcctg gacgatgccg tgcacaagga 961 gttcatccaa ctggtggctg gccaggatcg ggtcacgctg aaggtgcgcg gcgtgggaat 1021 gctgccagtg agggaccaac cggaggagcg tttgtcctgg agcgtggtca agttgcccag 1081 tgtgagtggc actccctcgg agagttcctt caagggcgag cgacgcggcg gcgccagccg 1141 ggacatcagt gtggtgctcc atgtggcgcc caggacgaag ctgggcctgg gcatttgcaa 1201 gggtcccgaa tggaagcccg gcatctttgt gcagttcacc aaggagcgga gtgtcgcaag 1261 ggaagcgggt ctgcgcccgg gtgaccagat actcagcgtg aacagcatcg acttctccga 1321 tgtgctcttc agcgaggcgg tggccgtgat gaagagcagc agcaagctgg acatggtggt 1381 gcgcacggcg gcgggatgtg acctcttccc aggcgaatcg agtggctaca acagctcggc 1441 cagctcggtg acgggcgatc agagtccctg ctgggcggat gccaagtcca agagattgac 1501 ggcggtcagg gaggagtccg ccggaggagg atcaggatcg ggaaatggta gcaccaactg 1561 gtcgcagggc gtcgaggtgc acaagcagat gaacaagacc atcatcaagc tgacggagaa 1621 tggtacctcc ataaacaaca cctacatagc cagtaattcc gtttccggtt ctggttctgg 1681 ttctggttcc tccgccagcg gaacttccgg tcgcagcctg caatcgcaat cgaatccttc 1741 ccgcaattca actaccatga agcgcagcca cctaaggcca gttaatactg cgggattagc 1801 aggcggatca ggatcgggat taggaggagt cattgctgca cctgctccac cgccaccggc 1861 catcaatgag ggagcctgta ccagcggctc agctggcagc agtctctcca gtgccataac 1921 cgaggagctc aagaagcgca aagagcagca gcagcagcag caacatcagc agcgcaacaa 1981 tcgcgatcga gatagagatc gagatgaaaa tggaaacgtg gatcgtcagc tggcggggca 2041 caatggaaat ggaaatggag gtggaaatgg aaatggaggt ggaaatggaa gtggaagtgg 2101 aggccaccgc agctccggcg gacaagtgtc gcatcgccag cgggcgaatg ttgctggcgt 2161 ggctgcaaca ttgcagagca gcgaacgcat cagcaatttg ggaggcggcg gcggaggagg 2221 aggaggagga ggaggagcgg gtggatccaa tggagctggc ggagatcagc acacggcgct 2281 gatggacgaa ttcaagcggg cgcaccagcg aatgttcagg aacgggttcc atgagagcga 2341 gcacaaggag cgcgttgaaa cgctgaaacg cacctcgatt atgcccgatg agagctgtta 2401 tcggaatagt atcaacagca acggcttcag cagcaacagg agcaacagca acggcagcag 2461 caacgtcaac agcaacccga gcaacagcaa cagcagcgac acgagcaaca ataatcgcct 2521 gcagccacaa aacggattta gtccggcgaa cggcaatgga tcgccggaac ttccgccacc 2581 gccaccacag ttcgccaatc cccagccaaa gcagatgccg ccccagcagc tcaagctgat 2641 caccggaaat ggagcggcga acggaaacgg aagtggaggt ggaggtggga taggactggg 2701 caacggcagc ttggccaagg tcaagcagcc catgtcgccc atgcgcagtg ccagcatcag 2761 tgtgggcgga ttccggccac cagccacgcc ccagcccgac tacgatgcag tccaactgag 2821 atcgcccacg ggaacaggat cgggatcggg atcaggatcg ggatccacga gtcagcagca 2881 gagaagaacc ctgcgattgg gcacggtgac catcggggag tacggagatc cgaggacgac 2941 ggcgacggga aagcgggaaa cgctgcgcaa aacgaacggg gagccgggct ccaatgggat 3001 cctaaagaac ggaaccaacc ggagcagcgc cagcttcaat cacggctcct cccaccagcc 3061 ggaaaagtcc atcaagttcg gcaactgatt gatataaccc gaatatatat atatttacct 3121 ttgtgcaata tgctcgatga ttgaggagag tacaaacaaa tcggacgtgc agcggctttc 3181 catatgcata tactacatat ctatcatatc cattatctta tatcattttt tttttttgct 3241 tacttctaac ttttattgta tttttttgaa acgatttgtt ggaaatattc tatcactagt 3301 tgctattatt taacgaacac tgtaaataaa ccactggcga gtgtgtgtgc gagtgtttcc 3361 aataaagcat atatatatat gtatgtacct ta