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LOCUS XM_070218844 3338 bp mRNA linear INV 09-DEC-2024 (LOC108065693), transcript variant X2, mRNA. ACCESSION XM_070218844 VERSION XM_070218844.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3338 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3338 /gene="LOC108065693" /note="autotransporter adhesin BpaC; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108065693" CDS 485..3034 /gene="LOC108065693" /codon_start=1 /product="autotransporter adhesin BpaC isoform X1" /protein_id="XP_070074945.1" /db_xref="GeneID:108065693" /translation="MMTMTAASASISASTSASASITNSASTDCSSSMQGSTTSSASSD VMTLTTTAASSWCAIPASSRLRVLRLVRPHQRRLLVGGPERGSTYGFAVRGGREHGTG FFVSHVEHGGEAQLKGLRIGDQILRINGFRLDDAVHKEFIQLVAGQDRVTLKVRGVGM LPVRDQPEERLSWSVVKLPSVSGTPSESSFKGERRGGASRDISVVLHVAPRTKLGLGI CKGPEWKPGIFVQFTKERSVAREAGLRPGDQILSVNSIDFSDVLFSEAVAVMKSSSKL DMVVRTAAGCDLFPGESSGYNSSASSVTGDQSPCWADAKSKRLTAVREESAGGGSGSG NGSTNWSQGVEVHKQMNKTIIKLTENGTSINNTYIASNSVSGSGSGSGSSASGTSGRS LQSQSNPSRNSTTMKRSHLRPVNTAGLAGGSGSGLGGVIAAPAPPPPAINEGACTSGS AGSSLSSAITEELKKRKEKQQQQQQHQQRNNRDRDRDRDENGNVDRQLAGHNGNGNGG GNGNGGGNGSGSGGHRSSGGQVSHRQRANVAGVAATLQSSERISNLGGGGGGGGGGGG AGGSNGAGGDQHTALMDEFKRAHQRMFRNGFHESEHKERVETLKRTSIMPDESCYRNS INSNGFSSNRSNSNGSSNVNSNPSNSNSSDTSNNNRLQPQNGFSPANGNGSPELPPPP PQFANPQPKQMPPQQLKLITGNGAANGNGSGGGGGIGLGNGSLAKVKQPMSPMRSASI SVGGFRPPATPQPDYDAVQLRSPTGTGSGSGSGSGSTSQQQRRTLRLGTVTIGEYGDP RTTATGKRETLRKTNGEPGSNGILKNGTNRSSASFNHGSSHQPEKSIKFGN" misc_feature 710..961 /gene="LOC108065693" /note="PDZ domain 1 of harmonin isoforms a, b, and c, and related domains; Region: PDZ1_harmonin; cd06737" /db_xref="CDD:467219" misc_feature order(746..766,800..802,809..811,896..898,908..910, 917..922) /gene="LOC108065693" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467219" misc_feature 1082..1327 /gene="LOC108065693" /note="canonical PDZ domain; Region: PDZ_canonical; cl49608" /db_xref="CDD:483948" misc_feature order(1121..1141,1175..1177,1184..1186,1271..1273, 1283..1285,1292..1297) /gene="LOC108065693" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467153" polyA_site 3338 /gene="LOC108065693" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gccgcctcaa tttgtcgtcg cctctcgcga gattcacgtc gtcagtgcgg aaaagcccgt 61 tcccagaaca agtacctccc acatatttcg ttttccattt ttccgaaaag aaaaacaaac 121 ggaaaatcgc gatcgttgcc ggcttaaaaa ataaatatat cgaagcgcgt gtgttttttg 181 gcatttgttt cttttttttc tggagtgcac tcgattttgg ggccagcaaa agtgctgaaa 241 gtgctcgcgg gctcacaaaa cgctgctgca cctgtctcac ctgagcgctt caagccacaa 301 aagtgtaaag tgcagcgcga ctctttgctg ttccgtcgtt tttatttatt tgttttttgc 361 ttcgcgattt cgagatcccc gagattcagc aagaattctg cgagcaattc ttcggccgct 421 tctttttctt cttcttggga cgcccgcacc gcaaatgagc tgcctgtgaa gaagccccaa 481 caaaatgatg acgatgacag cagcctcggc ctcgatatcc gcatccacat ccgcatcggc 541 atcgataaca aattcggcgt cgacggactg cagcagcagc atgcagggat cgacgaccag 601 ctcggcgtcc agcgatgtga tgaccctgac gaccacggcg gcctcctcgt ggtgcgccat 661 tccggcgagc tcccgcctgc gggtcctgcg cctggtcagg cctcaccagc ggcgtctgct 721 ggtcggcgga ccggagaggg gcagcaccta cggattcgcg gtgcgcggcg gtagggagca 781 cggcaccggt ttctttgtgt cccacgtgga gcacggcggc gaggcgcagt tgaagggtct 841 gcggattggc gaccagatcc tgcggatcaa cggctttcgc ctggacgatg ccgtgcacaa 901 ggagttcatc caactggtgg ctggccagga tcgggtcacg ctgaaggtgc gcggcgtggg 961 aatgctgcca gtgagggacc aaccggagga gcgtttgtcc tggagcgtgg tcaagttgcc 1021 cagtgtgagt ggcactccct cggagagttc cttcaagggc gagcgacgcg gcggcgccag 1081 ccgggacatc agtgtggtgc tccatgtggc gcccaggacg aagctgggcc tgggcatttg 1141 caagggtccc gaatggaagc ccggcatctt tgtgcagttc accaaggagc ggagtgtcgc 1201 aagggaagcg ggtctgcgcc cgggtgacca gatactcagc gtgaacagca tcgacttctc 1261 cgatgtgctc ttcagcgagg cggtggccgt gatgaagagc agcagcaagc tggacatggt 1321 ggtgcgcacg gcggcgggat gtgacctctt cccaggcgaa tcgagtggct acaacagctc 1381 ggccagctcg gtgacgggcg atcagagtcc ctgctgggcg gatgccaagt ccaagagatt 1441 gacggcggtc agggaggagt ccgccggagg aggatcagga tcgggaaatg gtagcaccaa 1501 ctggtcgcag ggcgtcgagg tgcacaagca gatgaacaag accatcatca agctgacgga 1561 gaatggtacc tccataaaca acacctacat agccagtaat tccgtttccg gttctggttc 1621 tggttctggt tcctccgcca gcggaacttc cggtcgcagc ctgcaatcgc aatcgaatcc 1681 ttcccgcaat tcaactacca tgaagcgcag ccacctaagg ccagttaata ctgcgggatt 1741 agcaggcgga tcaggatcgg gattaggagg agtcattgct gcacctgctc caccgccacc 1801 ggccatcaat gagggagcct gtaccagcgg ctcagctggc agcagtctct ccagtgccat 1861 aaccgaggag ctcaagaagc gcaaagagaa gcagcagcag cagcagcaac atcagcagcg 1921 caacaatcgc gatcgagata gagatcgaga tgaaaatgga aacgtggatc gtcagctggc 1981 ggggcacaat ggaaatggaa atggaggtgg aaatggaaat ggaggtggaa atggaagtgg 2041 aagtggaggc caccgcagct ccggcggaca agtgtcgcat cgccagcggg cgaatgttgc 2101 tggcgtggct gcaacattgc agagcagcga acgcatcagc aatttgggag gcggcggcgg 2161 aggaggagga ggaggaggag gagcgggtgg atccaatgga gctggcggag atcagcacac 2221 ggcgctgatg gacgaattca agcgggcgca ccagcgaatg ttcaggaacg ggttccatga 2281 gagcgagcac aaggagcgcg ttgaaacgct gaaacgcacc tcgattatgc ccgatgagag 2341 ctgttatcgg aatagtatca acagcaacgg cttcagcagc aacaggagca acagcaacgg 2401 cagcagcaac gtcaacagca acccgagcaa cagcaacagc agcgacacga gcaacaataa 2461 tcgcctgcag ccacaaaacg gatttagtcc ggcgaacggc aatggatcgc cggaacttcc 2521 gccaccgcca ccacagttcg ccaatcccca gccaaagcag atgccgcccc agcagctcaa 2581 gctgatcacc ggaaatggag cggcgaacgg aaacggaagt ggaggtggag gtgggatagg 2641 actgggcaac ggcagcttgg ccaaggtcaa gcagcccatg tcgcccatgc gcagtgccag 2701 catcagtgtg ggcggattcc ggccaccagc cacgccccag cccgactacg atgcagtcca 2761 actgagatcg cccacgggaa caggatcggg atcgggatca ggatcgggat ccacgagtca 2821 gcagcagaga agaaccctgc gattgggcac ggtgaccatc ggggagtacg gagatccgag 2881 gacgacggcg acgggaaagc gggaaacgct gcgcaaaacg aacggggagc cgggctccaa 2941 tgggatccta aagaacggaa ccaaccggag cagcgccagc ttcaatcacg gctcctccca 3001 ccagccggaa aagtccatca agttcggcaa ctgattgata taacccgaat atatatatat 3061 ttacctttgt gcaatatgct cgatgattga ggagagtaca aacaaatcgg acgtgcagcg 3121 gctttccata tgcatatact acatatctat catatccatt atcttatatc attttttttt 3181 tttgcttact tctaactttt attgtatttt tttgaaacga tttgttggaa atattctatc 3241 actagttgct attatttaac gaacactgta aataaaccac tggcgagtgt gtgtgcgagt 3301 gtttccaata aagcatatat atatatgtat gtacctta