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LOCUS XM_070218843 3394 bp mRNA linear INV 09-DEC-2024 (LOC108065693), transcript variant X1, mRNA. ACCESSION XM_070218843 VERSION XM_070218843.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3394 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3394 /gene="LOC108065693" /note="autotransporter adhesin BpaC; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108065693" CDS 541..3090 /gene="LOC108065693" /codon_start=1 /product="autotransporter adhesin BpaC isoform X1" /protein_id="XP_070074944.1" /db_xref="GeneID:108065693" /translation="MMTMTAASASISASTSASASITNSASTDCSSSMQGSTTSSASSD VMTLTTTAASSWCAIPASSRLRVLRLVRPHQRRLLVGGPERGSTYGFAVRGGREHGTG FFVSHVEHGGEAQLKGLRIGDQILRINGFRLDDAVHKEFIQLVAGQDRVTLKVRGVGM LPVRDQPEERLSWSVVKLPSVSGTPSESSFKGERRGGASRDISVVLHVAPRTKLGLGI CKGPEWKPGIFVQFTKERSVAREAGLRPGDQILSVNSIDFSDVLFSEAVAVMKSSSKL DMVVRTAAGCDLFPGESSGYNSSASSVTGDQSPCWADAKSKRLTAVREESAGGGSGSG NGSTNWSQGVEVHKQMNKTIIKLTENGTSINNTYIASNSVSGSGSGSGSSASGTSGRS LQSQSNPSRNSTTMKRSHLRPVNTAGLAGGSGSGLGGVIAAPAPPPPAINEGACTSGS AGSSLSSAITEELKKRKEKQQQQQQHQQRNNRDRDRDRDENGNVDRQLAGHNGNGNGG GNGNGGGNGSGSGGHRSSGGQVSHRQRANVAGVAATLQSSERISNLGGGGGGGGGGGG AGGSNGAGGDQHTALMDEFKRAHQRMFRNGFHESEHKERVETLKRTSIMPDESCYRNS INSNGFSSNRSNSNGSSNVNSNPSNSNSSDTSNNNRLQPQNGFSPANGNGSPELPPPP PQFANPQPKQMPPQQLKLITGNGAANGNGSGGGGGIGLGNGSLAKVKQPMSPMRSASI SVGGFRPPATPQPDYDAVQLRSPTGTGSGSGSGSGSTSQQQRRTLRLGTVTIGEYGDP RTTATGKRETLRKTNGEPGSNGILKNGTNRSSASFNHGSSHQPEKSIKFGN" misc_feature 766..1017 /gene="LOC108065693" /note="PDZ domain 1 of harmonin isoforms a, b, and c, and related domains; Region: PDZ1_harmonin; cd06737" /db_xref="CDD:467219" misc_feature order(802..822,856..858,865..867,952..954,964..966, 973..978) /gene="LOC108065693" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467219" misc_feature 1138..1383 /gene="LOC108065693" /note="canonical PDZ domain; Region: PDZ_canonical; cl49608" /db_xref="CDD:483948" misc_feature order(1177..1197,1231..1233,1240..1242,1327..1329, 1339..1341,1348..1353) /gene="LOC108065693" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467153" polyA_site 3394 /gene="LOC108065693" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gccgcctcaa tttgtcgtcg cctctcgcga gattcacgtc gtcagtgcgg aaaagcccgt 61 tcccagaaca agtacctccc acatatttcg ttttccattt ttccgaaaag aaaaacaaac 121 ggaaaatcgc gatcgttgcc ggcttaaaaa ataaatatat cgaagcgcgt gtgttttttg 181 gcatttgttt cttttttttc tggagtgcac tcgattttgg ggccagcaaa agtgctgaaa 241 gtgctcgcgg gctcacaaaa cgctgctgca cctgtctcac ctgagcgctt caagccacaa 301 aagtgtaaag tgcagcgcga ctctttgctg ttccgtcgtt tttatttatt tgttttttgc 361 ttcgcgattt cgagatcccc gagattcagc aagaattctg cgagcgtaag cgagtgtttt 421 gatactgctg ccgcgctcta attgccaggt ttcgtgtgta gaattcttcg gccgcttctt 481 tttcttcttc ttgggacgcc cgcaccgcaa atgagctgcc tgtgaagaag ccccaacaaa 541 atgatgacga tgacagcagc ctcggcctcg atatccgcat ccacatccgc atcggcatcg 601 ataacaaatt cggcgtcgac ggactgcagc agcagcatgc agggatcgac gaccagctcg 661 gcgtccagcg atgtgatgac cctgacgacc acggcggcct cctcgtggtg cgccattccg 721 gcgagctccc gcctgcgggt cctgcgcctg gtcaggcctc accagcggcg tctgctggtc 781 ggcggaccgg agaggggcag cacctacgga ttcgcggtgc gcggcggtag ggagcacggc 841 accggtttct ttgtgtccca cgtggagcac ggcggcgagg cgcagttgaa gggtctgcgg 901 attggcgacc agatcctgcg gatcaacggc tttcgcctgg acgatgccgt gcacaaggag 961 ttcatccaac tggtggctgg ccaggatcgg gtcacgctga aggtgcgcgg cgtgggaatg 1021 ctgccagtga gggaccaacc ggaggagcgt ttgtcctgga gcgtggtcaa gttgcccagt 1081 gtgagtggca ctccctcgga gagttccttc aagggcgagc gacgcggcgg cgccagccgg 1141 gacatcagtg tggtgctcca tgtggcgccc aggacgaagc tgggcctggg catttgcaag 1201 ggtcccgaat ggaagcccgg catctttgtg cagttcacca aggagcggag tgtcgcaagg 1261 gaagcgggtc tgcgcccggg tgaccagata ctcagcgtga acagcatcga cttctccgat 1321 gtgctcttca gcgaggcggt ggccgtgatg aagagcagca gcaagctgga catggtggtg 1381 cgcacggcgg cgggatgtga cctcttccca ggcgaatcga gtggctacaa cagctcggcc 1441 agctcggtga cgggcgatca gagtccctgc tgggcggatg ccaagtccaa gagattgacg 1501 gcggtcaggg aggagtccgc cggaggagga tcaggatcgg gaaatggtag caccaactgg 1561 tcgcagggcg tcgaggtgca caagcagatg aacaagacca tcatcaagct gacggagaat 1621 ggtacctcca taaacaacac ctacatagcc agtaattccg tttccggttc tggttctggt 1681 tctggttcct ccgccagcgg aacttccggt cgcagcctgc aatcgcaatc gaatccttcc 1741 cgcaattcaa ctaccatgaa gcgcagccac ctaaggccag ttaatactgc gggattagca 1801 ggcggatcag gatcgggatt aggaggagtc attgctgcac ctgctccacc gccaccggcc 1861 atcaatgagg gagcctgtac cagcggctca gctggcagca gtctctccag tgccataacc 1921 gaggagctca agaagcgcaa agagaagcag cagcagcagc agcaacatca gcagcgcaac 1981 aatcgcgatc gagatagaga tcgagatgaa aatggaaacg tggatcgtca gctggcgggg 2041 cacaatggaa atggaaatgg aggtggaaat ggaaatggag gtggaaatgg aagtggaagt 2101 ggaggccacc gcagctccgg cggacaagtg tcgcatcgcc agcgggcgaa tgttgctggc 2161 gtggctgcaa cattgcagag cagcgaacgc atcagcaatt tgggaggcgg cggcggagga 2221 ggaggaggag gaggaggagc gggtggatcc aatggagctg gcggagatca gcacacggcg 2281 ctgatggacg aattcaagcg ggcgcaccag cgaatgttca ggaacgggtt ccatgagagc 2341 gagcacaagg agcgcgttga aacgctgaaa cgcacctcga ttatgcccga tgagagctgt 2401 tatcggaata gtatcaacag caacggcttc agcagcaaca ggagcaacag caacggcagc 2461 agcaacgtca acagcaaccc gagcaacagc aacagcagcg acacgagcaa caataatcgc 2521 ctgcagccac aaaacggatt tagtccggcg aacggcaatg gatcgccgga acttccgcca 2581 ccgccaccac agttcgccaa tccccagcca aagcagatgc cgccccagca gctcaagctg 2641 atcaccggaa atggagcggc gaacggaaac ggaagtggag gtggaggtgg gataggactg 2701 ggcaacggca gcttggccaa ggtcaagcag cccatgtcgc ccatgcgcag tgccagcatc 2761 agtgtgggcg gattccggcc accagccacg ccccagcccg actacgatgc agtccaactg 2821 agatcgccca cgggaacagg atcgggatcg ggatcaggat cgggatccac gagtcagcag 2881 cagagaagaa ccctgcgatt gggcacggtg accatcgggg agtacggaga tccgaggacg 2941 acggcgacgg gaaagcggga aacgctgcgc aaaacgaacg gggagccggg ctccaatggg 3001 atcctaaaga acggaaccaa ccggagcagc gccagcttca atcacggctc ctcccaccag 3061 ccggaaaagt ccatcaagtt cggcaactga ttgatataac ccgaatatat atatatttac 3121 ctttgtgcaa tatgctcgat gattgaggag agtacaaaca aatcggacgt gcagcggctt 3181 tccatatgca tatactacat atctatcata tccattatct tatatcattt tttttttttg 3241 cttacttcta acttttattg tatttttttg aaacgatttg ttggaaatat tctatcacta 3301 gttgctatta tttaacgaac actgtaaata aaccactggc gagtgtgtgt gcgagtgttt 3361 ccaataaagc atatatatat atgtatgtac ctta