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LOCUS XM_070218840 6139 bp mRNA linear INV 09-DEC-2024 variant X9, mRNA. ACCESSION XM_070218840 VERSION XM_070218840.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6139 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6139 /gene="tyf" /note="twenty-four; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108067516" CDS 145..4923 /gene="tyf" /codon_start=1 /product="pneumococcal serine-rich repeat protein isoform X4" /protein_id="XP_070074941.1" /db_xref="GeneID:108067516" /translation="MLKKAEYDEEISYRAIKSCLTLNPSALASSAAAAAAGSSGGGSS SAGHNSGYSSTSTSTNHRSTDPGQQRHKQGGSLQDLVEAAHRSELATTSAAAAAATAA ASQRFNCDYQLSGRSNRRQQQQQQQHNQNATSSATASASKKIKNSSVSGRQREGGSLP SSVNFEPAAAMDAKQQQKQQQQEGSGSSAAGGSKNHSCSSLPSHLGDRDPEAGIQFDM DEDEATGGVAISGVPHDYLLEVSDDTLKRWDLRMDGSLWEIARALVKADLSDKAQLEP QNPSMTFLLDALSGQQPKQPKQPAEAREGGAAKEFLIDDPLHFSVLEVSARSQLQQQA HYLAALTGQFGLGLEEQKRKVEAGYVSLNDNYTACSSVYGGGAGSPAAIEGSKPSTSS ATSSGGSNCGGGASSSSDALSGELRPAKIGRMVAGAASTAAASMGGKATTRQLDENGN ALSDGFGGATGVATSSNGNQFTALITTTVGGSATTSSSSAAHRQNSVSTLLSTGTNTT TTAMAAAAVAASYSQLQQAPSGGAVAAGPGIGIGIQQNPTKQKAKKKSQQERNTTTVD VESVAGYRGNDPVEQLVKYIENDVNGGGGNTAAGQRKKERKKQNKLKKSNSLEELRSC SKMEVDDLKRQSATTEMMRQKKGPNNAGPSGTSSSAAAAGGKHNSASVADINKNCNKE QQQVQVQVRNSSSNPGGTQQRKGERRSWGTEELQYLGDRQEMSAAWSEPESLAQKPLT SLPALTRMSELDALNTVLSETAEFHVVTKKKKPKKQRAVTMDDAAVAVAAAATTGGNL QRMQQITKSASSNMMSQRMHYYTSSNNNGGGAGVATYKQQQEHYQAQQGQHHHHHHHH HHHHHHHGGSAVSNQVDGSRRKSTSSMPPSEKSDSSDLDSVHSLPIQTGKKKSLGGGG GNNKQRAAQAASQRQAKQNNSSPAPISYADIARNKQEALNQAAASDTELELKGSKSKS RPDFPELPAGNQQQQQPIVVSNQNTAPSSSSSISYSQSLNATPASSSSDAESLNSPEL QVVACSLATSTSSCGSGSSSSSSSASTSSTASSSASPPALQKSKSVEHDASYSCTSSN LDQQYPALEKTVKRHSTNNVSVAVASSSASLYNFAAAAKQQLAEKAAAATTTTSTAVS VPAAPGSSSTPSPAVKLKAKPKELSPSSSSSSKKPPKEEATSSSSKATISTSTTTTTT QKTTAATQTEGAKKLSSSSCIAKGAGAVLEATAGRRAVIILNDDREAGRSNNEFIFGD FNEDELKLFDDNLEDEVQAANKQQQTEAEDEAEDADQTEVESREKESQQLNDSGAASD AVNSSASLDMLSISAETGQSSPSAASLINSSTPSGSSSASASTSTSSSSISSSSSSGS NGNGAACLASISGMLGQSVANQSGDSGIYAAANTSIKEQVNNFLSKASSSEETLPSTN SISMQQLETCNDIEAAIIAAARAAAAARSTSCSRSNSQEQEQQAKTIRSNSNTNSNPN PNPETKVALPVFMNYNDDDEEDDESLQELSFMADLKDAAATTSAEAEAQEVTVLPPPP PSRPAMMTNTELIVDYIANTWNAIANSKYVTYYNEREQET" polyA_site 6139 /gene="tyf" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtaaaatatt gttatgaagg agtatttatt tcaagatctt atagatgtac aatattgtta 61 tgaaggcata tttctttcaa gattttataa atgtagatat aaaactatat atttaagttg 121 tgcagccttt tttcatttta gcaaatgctc aaaaaggctg agtacgacga ggagatctct 181 tatcgtgcca tcaaatcctg cctcacactc aacccatccg cactagcgtc cagtgcagca 241 gcggcggcag caggctcgag cggcgggggc agcagcagtg cagggcacaa cagcggctac 301 agctccacct ccacctccac caatcaccgg tcgacggatc ccggccagca gcggcacaag 361 cagggcggct ccctgcagga tctcgtcgag gcggcgcacc gcagtgagct ggccaccacc 421 tcggcggcgg cggctgcagc gacggcggcg gcaagccaac gtttcaactg tgattaccag 481 ctgagtggcc gctccaatcg ccgccagcag cagcagcagc agcagcacaa ccaaaacgcc 541 acctcctccg caactgcatc cgcatctaag aagatcaaga actcatccgt ctcgggccgg 601 cagcgcgaag gaggcagcct gcccagcagc gttaactttg agccggcagc tgccatggat 661 gccaagcagc agcagaagca gcagcagcag gagggatccg gatcatcggc agcaggtggc 721 agcaagaacc acagctgcag cagcctgccc agccatctgg gcgatcggga tcccgaggcg 781 ggcatccagt tcgacatgga cgaggacgag gcgacgggcg gcgtcgccat tagcggcgtc 841 ccacacgact acctgttgga ggtaagcgat gatacgctca agaggtggga cctccgaatg 901 gacggcagtc tctgggagat agcaagggcc ctcgttaaag cagatttaag cgataaggcg 961 caattggagc cccagaatcc ctcgatgacg ttcctgctcg acgccctcag tggccagcag 1021 cccaagcagc cgaagcagcc ggcggaggcc cgggaaggcg gtgccgccaa agagttccta 1081 atcgacgacc cgctgcactt ctccgtcctg gaggtttcgg ccaggagcca gctgcagcag 1141 caggcccact atctggccgc cctaaccggg caattcggtc tcgggctgga ggagcagaag 1201 cgcaaggtgg aggccggcta tgtgtcgctc aacgacaact acacggcctg ctcctcggtt 1261 tacggcggcg gcgctggttc gccagctgcc atcgagggca gcaagccctc gacttcctcc 1321 gcgacctctt ccggcggcag caactgcggc ggcggcgcct cctcctcctc cgacgcgctc 1381 tccggcgagc tgcgtcccgc gaagattgga cgcatggtcg ctggagcagc gtcgacggca 1441 gctgcgtcga tgggtggcaa ggccacaacg cgccagctgg acgagaatgg caatgccttg 1501 agcgatggct ttggaggagc cactggagtg gccaccagca gcaatggaaa ccagttcacg 1561 gccttgataa ccaccacagt gggcggcagt gccaccacct cctcctcgtc ggccgcccac 1621 cgtcagaata gcgtgtccac gctgctctcc acgggcacga acaccaccac cacggccatg 1681 gcagccgcag cggtggctgc atcctacagc cagctgcaac aggcgcccag cggtggagct 1741 gttgctgccg ggccgggaat aggcattggc atccagcaga atcccaccaa gcagaaggcc 1801 aagaagaagt cgcagcagga gaggaatacg accaccgtgg acgtggagtc ggtggccggc 1861 tatcggggca acgatcccgt cgagcagctg gtcaagtaca tcgagaacga tgtgaatggc 1921 ggaggcggga acactgcagc ggggcagcgc aagaaggagc gcaagaagca gaacaagctc 1981 aagaagagca actcgctgga ggagctgcgc agctgctcga aaatggaggt ggacgatttg 2041 aagcgccagt cggcgaccac ggagatgatg cgtcagaaga agggcccaaa taatgctggc 2101 ccaagcggca cttcctcctc cgccgccgcc gccggtggca agcacaattc ggcctccgtg 2161 gcggacataa acaagaattg caacaaggag cagcagcagg tgcaggtgca ggtgcggaat 2221 tcgagcagta atccgggcgg aacgcagcag cggaagggcg agcggcgatc gtggggcacc 2281 gaggagctgc agtacctggg cgaccgccag gaaatgtctg cagcctggtc ggaacccgaa 2341 tccctggccc agaagccact cacttcgctg cccgccttaa cgcgcatgtc cgagctggac 2401 gccctgaaca ctgtgctctc cgaaacggcc gagttccatg tggtgaccaa gaagaagaaa 2461 ccaaagaagc aacgcgccgt caccatggac gatgcggcgg tggcggtggc ggcggcggcc 2521 accacgggtg gcaatttgca gcgcatgcag cagatcacca agtcggcctc ctcgaacatg 2581 atgtcccagc ggatgcacta ctacaccagt agcaacaaca acggaggagg agcaggagta 2641 gctacctaca agcagcagca ggagcactac caggcgcagc agggccagca ccatcatcat 2701 catcatcatc accaccacca tcatcaccat catggcggct cggcggtttc caatcaggtg 2761 gatggatcgc gtcgcaagtc cacctcctcc atgccgccgt cggagaagtc cgactccagt 2821 gatctcgact cggtccactc gctgcccatc cagacgggca agaagaagag cctgggcggc 2881 ggcggcggca acaacaagca gcgggcggcg caggccgcca gtcagcggca ggcgaagcaa 2941 aataatagct caccggcgcc catttcgtat gcggatattg cgcgcaacaa gcaggaggct 3001 ttgaaccagg ccgcggccag cgacacggaa ctggagctca agggcagcaa gtccaagtcg 3061 cggcccgact ttccagagct gccagcaggg aatcagcagc agcagcaacc gatcgttgtc 3121 agcaatcaaa atacggcgcc gtcctcgtcc agttcgatta gctactcgca gagcctgaat 3181 gccacgcccg ccagcagcag cagcgatgcg gagtcgctca actctccaga gctccaagtg 3241 gtagcctgca gcctggccac gtccacgagc agctgcggca gcggcagcag cagcagcagt 3301 tccagcgcca gcacctcctc cacagcctcc tcctccgcct cgccgcccgc gctgcagaag 3361 tcgaagagcg tggagcacga cgccagctac agctgcacaa gcagcaacct ggaccagcag 3421 tatccggcgc tggagaagac cgtcaagcgg cacagcacca acaatgtgtc cgtggccgtc 3481 gcctcctcct cggcttcgct gtacaacttt gcagcggcag ccaagcagca gctggcggag 3541 aaagccgctg cagcaacaac tactacctca actgcagttt cagttccagc tgctcctggt 3601 tcgtcctcga ctccctcgcc tgctgtcaag ttgaaggcca agccaaagga gctgtctccc 3661 agcagcagca gcagcagcaa gaagcctcct aaagaggagg cgacgtcgtc ttcgtccaag 3721 gcgaccatta gcaccagcac cacgaccacg accacgcaaa agaccacggc tgccacgcag 3781 accgagggag ccaagaagct cagcagcagt agctgcattg ccaagggagc cggtgccgtt 3841 ttggaggcca ccgccggcag gagggcggtg attatactca acgatgatcg cgaggcgggc 3901 aggagcaaca acgagttcat tttcggggac tttaacgagg atgagctgaa gctgttcgac 3961 gataatttag aggatgaagt gcaggccgcg aataagcagc agcaaacgga ggcggaagat 4021 gaggcggaag atgcagatca aacagaagtg gagagccggg aaaaggaatc gcagcagctg 4081 aatgattcgg gggccgcttc agatgcagtc aacagctcgg ccagcctgga tatgctctcg 4141 atttcggcgg agacgggaca atcgtcgccg agcgccgcca gtctgattaa ctcgtccacg 4201 ccctcgggct cttcgtccgc gtcggccagc acctccacct cgtcgtcctc gatttcgtcc 4261 tcctcctcct cgggcagcaa cggcaacggc gccgcctgtc tggcctccat ttcgggcatg 4321 ctcggccaat cagtggccaa tcagtcgggg gatagcggca tctatgccgc agccaatacg 4381 tccatcaagg agcaggtcaa caatttcctc agcaaggcga gcagcagcga ggagacgctg 4441 ccgagcacca actcgatttc gatgcagcaa ctggagacgt gcaacgacat tgaggcggcc 4501 atcatagccg ccgcccgtgc ggcagccgct gcccggagca ccagctgcag tcgcagcaac 4561 tcgcaggagc aggagcagca ggccaagaca attaggtcga attcaaatac aaattcaaat 4621 cccaatccca atccggagac gaaagtagcc ctgcccgtgt ttatgaacta caacgacgac 4681 gacgaagagg acgacgagag cttgcaggaa ctgagcttca tggcggacct taaggatgct 4741 gcggccacga cgtccgcgga ggcggaggct caggaggtta ctgtgctgcc gccgccgccg 4801 ccctcgcgac cggcgatgat gaccaacacg gaactgattg tcgactacat cgccaacacc 4861 tggaatgcca ttgccaatag caagtatgtc acatactaca acgagcggga gcaggagacc 4921 tagaaatcag atcagcaaca gcagcagcag cagcaacagc aacaccaatc gcaatagcaa 4981 cgtcagcaat atcggcagct gagaacagga gagaggagtt tagttcgaat tgcatgttcc 5041 gatgtttata tttcactttt ttttttttta ctttgtgctg ggccatcgtt tatacatcta 5101 ccgatatcgt acatacacta taaataattg ctataacaat acgcttttat gctaattaat 5161 gtaacgaatc aatggattcg agcgcggcag cggaggatca ggattgtcag gattgcagga 5221 ttgtcaggat tgtcagggtg tgtctgtgtt tccagtatga atgcgagcga gtgcctgaga 5281 ttaggagtat aggatctatt tagatgcagg tcgataatcg ccaggagaag atcgaacacg 5341 aaccctcaaa ccgttcgtac agctgtgaat aagaagggaa acattactag gaaagaggaa 5401 attagaagag aaagtaatca gaagatcaga ggatcgaaaa caagctacaa gtggatattt 5461 atttaacgtt agttgaccgc gatttaacga tgcgatgcat agtgatgttc aatcaagcat 5521 ttggatctgc ttttgttaat ttacaacctt ctggctcctt aaaacgcaac gttttaccat 5581 tactattact attactgtac tttaattatt attactacta ttacgcaagc gttttttttt 5641 gtctttgttt tttaaacgcc ccacgagatc atcggagggc gtgctatatt gcaaaagcag 5701 aaattaaaac taatcctagt tcttagacag agtcaacgtc gcgtgtacat atatatatga 5761 gaccagaagt ttaggaggca gttcgaccat tgagtttatg tgttagagag aggaaagaaa 5821 gaaagaaaga aagccccacg gaaaatattt gatatgtgtg tgtatgataa cgactattta 5881 aagtaaacta tgtaaggccc gctccttagc tccggctagc cataaataag cctcatgagg 5941 aaagtatgtt agacagcata accgcaaaac agaaaacaga aaaccacaaa aaaccagcaa 6001 aaacactaaa aactattatg cacttacgaa aaatgccgcc gtttagcagg gagagcctca 6061 gaaggtctct ccgaagggta aaaaataaaa gaaggatagt agatatcgta accattaaaa 6121 cagaaaatcg taaaaaaac