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LOCUS XM_070218838 6524 bp mRNA linear INV 09-DEC-2024 variant X7, mRNA. ACCESSION XM_070218838 VERSION XM_070218838.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6524 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6524 /gene="tyf" /note="twenty-four; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108067516" CDS 530..5308 /gene="tyf" /codon_start=1 /product="pneumococcal serine-rich repeat protein isoform X4" /protein_id="XP_070074939.1" /db_xref="GeneID:108067516" /translation="MLKKAEYDEEISYRAIKSCLTLNPSALASSAAAAAAGSSGGGSS SAGHNSGYSSTSTSTNHRSTDPGQQRHKQGGSLQDLVEAAHRSELATTSAAAAAATAA ASQRFNCDYQLSGRSNRRQQQQQQQHNQNATSSATASASKKIKNSSVSGRQREGGSLP SSVNFEPAAAMDAKQQQKQQQQEGSGSSAAGGSKNHSCSSLPSHLGDRDPEAGIQFDM DEDEATGGVAISGVPHDYLLEVSDDTLKRWDLRMDGSLWEIARALVKADLSDKAQLEP QNPSMTFLLDALSGQQPKQPKQPAEAREGGAAKEFLIDDPLHFSVLEVSARSQLQQQA HYLAALTGQFGLGLEEQKRKVEAGYVSLNDNYTACSSVYGGGAGSPAAIEGSKPSTSS ATSSGGSNCGGGASSSSDALSGELRPAKIGRMVAGAASTAAASMGGKATTRQLDENGN ALSDGFGGATGVATSSNGNQFTALITTTVGGSATTSSSSAAHRQNSVSTLLSTGTNTT TTAMAAAAVAASYSQLQQAPSGGAVAAGPGIGIGIQQNPTKQKAKKKSQQERNTTTVD VESVAGYRGNDPVEQLVKYIENDVNGGGGNTAAGQRKKERKKQNKLKKSNSLEELRSC SKMEVDDLKRQSATTEMMRQKKGPNNAGPSGTSSSAAAAGGKHNSASVADINKNCNKE QQQVQVQVRNSSSNPGGTQQRKGERRSWGTEELQYLGDRQEMSAAWSEPESLAQKPLT SLPALTRMSELDALNTVLSETAEFHVVTKKKKPKKQRAVTMDDAAVAVAAAATTGGNL QRMQQITKSASSNMMSQRMHYYTSSNNNGGGAGVATYKQQQEHYQAQQGQHHHHHHHH HHHHHHHGGSAVSNQVDGSRRKSTSSMPPSEKSDSSDLDSVHSLPIQTGKKKSLGGGG GNNKQRAAQAASQRQAKQNNSSPAPISYADIARNKQEALNQAAASDTELELKGSKSKS RPDFPELPAGNQQQQQPIVVSNQNTAPSSSSSISYSQSLNATPASSSSDAESLNSPEL QVVACSLATSTSSCGSGSSSSSSSASTSSTASSSASPPALQKSKSVEHDASYSCTSSN LDQQYPALEKTVKRHSTNNVSVAVASSSASLYNFAAAAKQQLAEKAAAATTTTSTAVS VPAAPGSSSTPSPAVKLKAKPKELSPSSSSSSKKPPKEEATSSSSKATISTSTTTTTT QKTTAATQTEGAKKLSSSSCIAKGAGAVLEATAGRRAVIILNDDREAGRSNNEFIFGD FNEDELKLFDDNLEDEVQAANKQQQTEAEDEAEDADQTEVESREKESQQLNDSGAASD AVNSSASLDMLSISAETGQSSPSAASLINSSTPSGSSSASASTSTSSSSISSSSSSGS NGNGAACLASISGMLGQSVANQSGDSGIYAAANTSIKEQVNNFLSKASSSEETLPSTN SISMQQLETCNDIEAAIIAAARAAAAARSTSCSRSNSQEQEQQAKTIRSNSNTNSNPN PNPETKVALPVFMNYNDDDEEDDESLQELSFMADLKDAAATTSAEAEAQEVTVLPPPP PSRPAMMTNTELIVDYIANTWNAIANSKYVTYYNEREQET" polyA_site 6524 /gene="tyf" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttgaaattga gaacagagtt cattggaatt tctgcagatt gcagttggat tttttttgag 61 cagcgattac gattgctatt ccaaattcca aaaccgaatc ggagaggcag gagaaccgca 121 taaaaccaca aagagcgact ttatctagca acaacattgg ccaaaagccg ccgcattaac 181 cgcacaagtt cctcgttttt ccccattatt attacaattc ttttttattt tttttttttc 241 gtgtgcaaca ccatagttta tttatttgaa ccgtgcgcta tctgatactc ccataactcc 301 gcgctcggta ctcaaacagt ttgcttgggg aacttggaag ggcatgtgtt tggaataagt 361 agagctctct tctgtttttc cattttctcg ctttaagaca aaatacgata cctgggaaga 421 tagcgatttt aatgatctcg acgacgcatc attgaagaaa cttctcgagg aggcatattg 481 gtatcgaaat cctggcgaca ggaagaacaa gagcgagcga tttctgcaaa tgctcaaaaa 541 ggctgagtac gacgaggaga tctcttatcg tgccatcaaa tcctgcctca cactcaaccc 601 atccgcacta gcgtccagtg cagcagcggc ggcagcaggc tcgagcggcg ggggcagcag 661 cagtgcaggg cacaacagcg gctacagctc cacctccacc tccaccaatc accggtcgac 721 ggatcccggc cagcagcggc acaagcaggg cggctccctg caggatctcg tcgaggcggc 781 gcaccgcagt gagctggcca ccacctcggc ggcggcggct gcagcgacgg cggcggcaag 841 ccaacgtttc aactgtgatt accagctgag tggccgctcc aatcgccgcc agcagcagca 901 gcagcagcag cacaaccaaa acgccacctc ctccgcaact gcatccgcat ctaagaagat 961 caagaactca tccgtctcgg gccggcagcg cgaaggaggc agcctgccca gcagcgttaa 1021 ctttgagccg gcagctgcca tggatgccaa gcagcagcag aagcagcagc agcaggaggg 1081 atccggatca tcggcagcag gtggcagcaa gaaccacagc tgcagcagcc tgcccagcca 1141 tctgggcgat cgggatcccg aggcgggcat ccagttcgac atggacgagg acgaggcgac 1201 gggcggcgtc gccattagcg gcgtcccaca cgactacctg ttggaggtaa gcgatgatac 1261 gctcaagagg tgggacctcc gaatggacgg cagtctctgg gagatagcaa gggccctcgt 1321 taaagcagat ttaagcgata aggcgcaatt ggagccccag aatccctcga tgacgttcct 1381 gctcgacgcc ctcagtggcc agcagcccaa gcagccgaag cagccggcgg aggcccggga 1441 aggcggtgcc gccaaagagt tcctaatcga cgacccgctg cacttctccg tcctggaggt 1501 ttcggccagg agccagctgc agcagcaggc ccactatctg gccgccctaa ccgggcaatt 1561 cggtctcggg ctggaggagc agaagcgcaa ggtggaggcc ggctatgtgt cgctcaacga 1621 caactacacg gcctgctcct cggtttacgg cggcggcgct ggttcgccag ctgccatcga 1681 gggcagcaag ccctcgactt cctccgcgac ctcttccggc ggcagcaact gcggcggcgg 1741 cgcctcctcc tcctccgacg cgctctccgg cgagctgcgt cccgcgaaga ttggacgcat 1801 ggtcgctgga gcagcgtcga cggcagctgc gtcgatgggt ggcaaggcca caacgcgcca 1861 gctggacgag aatggcaatg ccttgagcga tggctttgga ggagccactg gagtggccac 1921 cagcagcaat ggaaaccagt tcacggcctt gataaccacc acagtgggcg gcagtgccac 1981 cacctcctcc tcgtcggccg cccaccgtca gaatagcgtg tccacgctgc tctccacggg 2041 cacgaacacc accaccacgg ccatggcagc cgcagcggtg gctgcatcct acagccagct 2101 gcaacaggcg cccagcggtg gagctgttgc tgccgggccg ggaataggca ttggcatcca 2161 gcagaatccc accaagcaga aggccaagaa gaagtcgcag caggagagga atacgaccac 2221 cgtggacgtg gagtcggtgg ccggctatcg gggcaacgat cccgtcgagc agctggtcaa 2281 gtacatcgag aacgatgtga atggcggagg cgggaacact gcagcggggc agcgcaagaa 2341 ggagcgcaag aagcagaaca agctcaagaa gagcaactcg ctggaggagc tgcgcagctg 2401 ctcgaaaatg gaggtggacg atttgaagcg ccagtcggcg accacggaga tgatgcgtca 2461 gaagaagggc ccaaataatg ctggcccaag cggcacttcc tcctccgccg ccgccgccgg 2521 tggcaagcac aattcggcct ccgtggcgga cataaacaag aattgcaaca aggagcagca 2581 gcaggtgcag gtgcaggtgc ggaattcgag cagtaatccg ggcggaacgc agcagcggaa 2641 gggcgagcgg cgatcgtggg gcaccgagga gctgcagtac ctgggcgacc gccaggaaat 2701 gtctgcagcc tggtcggaac ccgaatccct ggcccagaag ccactcactt cgctgcccgc 2761 cttaacgcgc atgtccgagc tggacgccct gaacactgtg ctctccgaaa cggccgagtt 2821 ccatgtggtg accaagaaga agaaaccaaa gaagcaacgc gccgtcacca tggacgatgc 2881 ggcggtggcg gtggcggcgg cggccaccac gggtggcaat ttgcagcgca tgcagcagat 2941 caccaagtcg gcctcctcga acatgatgtc ccagcggatg cactactaca ccagtagcaa 3001 caacaacgga ggaggagcag gagtagctac ctacaagcag cagcaggagc actaccaggc 3061 gcagcagggc cagcaccatc atcatcatca tcatcaccac caccatcatc accatcatgg 3121 cggctcggcg gtttccaatc aggtggatgg atcgcgtcgc aagtccacct cctccatgcc 3181 gccgtcggag aagtccgact ccagtgatct cgactcggtc cactcgctgc ccatccagac 3241 gggcaagaag aagagcctgg gcggcggcgg cggcaacaac aagcagcggg cggcgcaggc 3301 cgccagtcag cggcaggcga agcaaaataa tagctcaccg gcgcccattt cgtatgcgga 3361 tattgcgcgc aacaagcagg aggctttgaa ccaggccgcg gccagcgaca cggaactgga 3421 gctcaagggc agcaagtcca agtcgcggcc cgactttcca gagctgccag cagggaatca 3481 gcagcagcag caaccgatcg ttgtcagcaa tcaaaatacg gcgccgtcct cgtccagttc 3541 gattagctac tcgcagagcc tgaatgccac gcccgccagc agcagcagcg atgcggagtc 3601 gctcaactct ccagagctcc aagtggtagc ctgcagcctg gccacgtcca cgagcagctg 3661 cggcagcggc agcagcagca gcagttccag cgccagcacc tcctccacag cctcctcctc 3721 cgcctcgccg cccgcgctgc agaagtcgaa gagcgtggag cacgacgcca gctacagctg 3781 cacaagcagc aacctggacc agcagtatcc ggcgctggag aagaccgtca agcggcacag 3841 caccaacaat gtgtccgtgg ccgtcgcctc ctcctcggct tcgctgtaca actttgcagc 3901 ggcagccaag cagcagctgg cggagaaagc cgctgcagca acaactacta cctcaactgc 3961 agtttcagtt ccagctgctc ctggttcgtc ctcgactccc tcgcctgctg tcaagttgaa 4021 ggccaagcca aaggagctgt ctcccagcag cagcagcagc agcaagaagc ctcctaaaga 4081 ggaggcgacg tcgtcttcgt ccaaggcgac cattagcacc agcaccacga ccacgaccac 4141 gcaaaagacc acggctgcca cgcagaccga gggagccaag aagctcagca gcagtagctg 4201 cattgccaag ggagccggtg ccgttttgga ggccaccgcc ggcaggaggg cggtgattat 4261 actcaacgat gatcgcgagg cgggcaggag caacaacgag ttcattttcg gggactttaa 4321 cgaggatgag ctgaagctgt tcgacgataa tttagaggat gaagtgcagg ccgcgaataa 4381 gcagcagcaa acggaggcgg aagatgaggc ggaagatgca gatcaaacag aagtggagag 4441 ccgggaaaag gaatcgcagc agctgaatga ttcgggggcc gcttcagatg cagtcaacag 4501 ctcggccagc ctggatatgc tctcgatttc ggcggagacg ggacaatcgt cgccgagcgc 4561 cgccagtctg attaactcgt ccacgccctc gggctcttcg tccgcgtcgg ccagcacctc 4621 cacctcgtcg tcctcgattt cgtcctcctc ctcctcgggc agcaacggca acggcgccgc 4681 ctgtctggcc tccatttcgg gcatgctcgg ccaatcagtg gccaatcagt cgggggatag 4741 cggcatctat gccgcagcca atacgtccat caaggagcag gtcaacaatt tcctcagcaa 4801 ggcgagcagc agcgaggaga cgctgccgag caccaactcg atttcgatgc agcaactgga 4861 gacgtgcaac gacattgagg cggccatcat agccgccgcc cgtgcggcag ccgctgcccg 4921 gagcaccagc tgcagtcgca gcaactcgca ggagcaggag cagcaggcca agacaattag 4981 gtcgaattca aatacaaatt caaatcccaa tcccaatccg gagacgaaag tagccctgcc 5041 cgtgtttatg aactacaacg acgacgacga agaggacgac gagagcttgc aggaactgag 5101 cttcatggcg gaccttaagg atgctgcggc cacgacgtcc gcggaggcgg aggctcagga 5161 ggttactgtg ctgccgccgc cgccgccctc gcgaccggcg atgatgacca acacggaact 5221 gattgtcgac tacatcgcca acacctggaa tgccattgcc aatagcaagt atgtcacata 5281 ctacaacgag cgggagcagg agacctagaa atcagatcag caacagcagc agcagcagca 5341 acagcaacac caatcgcaat agcaacgtca gcaatatcgg cagctgagaa caggagagag 5401 gagtttagtt cgaattgcat gttccgatgt ttatatttca cttttttttt ttttactttg 5461 tgctgggcca tcgtttatac atctaccgat atcgtacata cactataaat aattgctata 5521 acaatacgct tttatgctaa ttaatgtaac gaatcaatgg attcgagcgc ggcagcggag 5581 gatcaggatt gtcaggattg caggattgtc aggattgtca gggtgtgtct gtgtttccag 5641 tatgaatgcg agcgagtgcc tgagattagg agtataggat ctatttagat gcaggtcgat 5701 aatcgccagg agaagatcga acacgaaccc tcaaaccgtt cgtacagctg tgaataagaa 5761 gggaaacatt actaggaaag aggaaattag aagagaaagt aatcagaaga tcagaggatc 5821 gaaaacaagc tacaagtgga tatttattta acgttagttg accgcgattt aacgatgcga 5881 tgcatagtga tgttcaatca agcatttgga tctgcttttg ttaatttaca accttctggc 5941 tccttaaaac gcaacgtttt accattacta ttactattac tgtactttaa ttattattac 6001 tactattacg caagcgtttt tttttgtctt tgttttttaa acgccccacg agatcatcgg 6061 agggcgtgct atattgcaaa agcagaaatt aaaactaatc ctagttctta gacagagtca 6121 acgtcgcgtg tacatatata tatgagacca gaagtttagg aggcagttcg accattgagt 6181 ttatgtgtta gagagaggaa agaaagaaag aaagaaagcc ccacggaaaa tatttgatat 6241 gtgtgtgtat gataacgact atttaaagta aactatgtaa ggcccgctcc ttagctccgg 6301 ctagccataa ataagcctca tgaggaaagt atgttagaca gcataaccgc aaaacagaaa 6361 acagaaaacc acaaaaaacc agcaaaaaca ctaaaaacta ttatgcactt acgaaaaatg 6421 ccgccgttta gcagggagag cctcagaagg tctctccgaa gggtaaaaaa taaaagaagg 6481 atagtagata tcgtaaccat taaaacagaa aatcgtaaaa aaac