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LOCUS XM_070218837 6276 bp mRNA linear INV 09-DEC-2024 variant X6, mRNA. ACCESSION XM_070218837 VERSION XM_070218837.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6276 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6276 /gene="tyf" /note="twenty-four; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108067516" CDS 105..5060 /gene="tyf" /codon_start=1 /product="pneumococcal serine-rich repeat protein isoform X3" /protein_id="XP_070074938.1" /db_xref="GeneID:108067516" /translation="MSSRSGQRYCWVLKKTKYDTWEDSDFNDLDDASLKKLLEEAYWY RNPGDRKNKSERFLQMLKKAEYDEEISYRAIKSCLTLNPSALASSAAAAAAGSSGGGS SSAGHNSGYSSTSTSTNHRSTDPGQQRHKQGGSLQDLVEAAHRSELATTSAAAAAATA AASQRFNCDYQLSGRSNRRQQQQQQQHNQNATSSATASASKKIKNSSVSGRQREGGSL PSSVNFEPAAAMDAKQQQKQQQQEGSGSSAAGGSKNHSCSSLPSHLGDRDPEAGIQFD MDEDEATGGVAISGVPHDYLLEVSDDTLKRWDLRMDGSLWEIARALVKADLSDKAQLE PQNPSMTFLLDALSGQQPKQPKQPAEAREGGAAKEFLIDDPLHFSVLEVSARSQLQQQ AHYLAALTGQFGLGLEEQKRKVEAGYVSLNDNYTACSSVYGGGAGSPAAIEGSKPSTS SATSSGGSNCGGGASSSSDALSGELRPAKIGRMVAGAASTAAASMGGKATTRQLDENG NALSDGFGGATGVATSSNGNQFTALITTTVGGSATTSSSSAAHRQNSVSTLLSTGTNT TTTAMAAAAVAASYSQLQQAPSGGAVAAGPGIGIGIQQNPTKQKAKKKSQQERNTTTV DVESVAGYRGNDPVEQLVKYIENDVNGGGGNTAAGQRKKERKKQNKLKKSNSLEELRS CSKMEVDDLKRQSATTEMMRQKKGPNNAGPSGTSSSAAAAGGKHNSASVADINKNCNK EQQQVQVQVRNSSSNPGGTQQRKGERRSWGTEELQYLGDRQEMSAAWSEPESLAQKPL TSLPALTRMSELDALNTVLSETAEFHVVTKKKKPKKQRAVTMDDAAVAVAAAATTGGN LQRMQQITKSASSNMMSQRMHYYTSSNNNGGGAGVATYKQQQEHYQAQQGQHHHHHHH HHHHHHHHGGSAVSNQVDGSRRKSTSSMPPSEKSDSSDLDSVHSLPIQTGKKKSLGGG GGNNKQRAAQAASQRQAKQNNSSPAPISYADIARNKQEALNQAAASDTELELKGSKSK SRPDFPELPAGNQQQQQPIVVSNQNTAPSSSSSISYSQSLNATPASSSSDAESLNSPE LQVVACSLATSTSSCGSGSSSSSSSASTSSTASSSASPPALQKSKSVEHDASYSCTSS NLDQQYPALEKTVKRHSTNNVSVAVASSSASLYNFAAAAKQQLAEKAAAATTTTSTAV SVPAAPGSSSTPSPAVKLKAKPKELSPSSSSSSKKPPKEEATSSSSKATISTSTTTTT TQKTTAATQTEGAKKLSSSSCIAKGAGAVLEATAGRRAVIILNDDREAGRSNNEFIFG DFNEDELKLFDDNLEDEVQAANKQQQTEAEDEAEDADQTEVESREKESQQLNDSGAAS DAVNSSASLDMLSISAETGQSSPSAASLINSSTPSGSSSASASTSTSSSSISSSSSSG SNGNGAACLASISGMLGQSVANQSGDSGIYAAANTSIKEQVNNFLSKASSSEETLPST NSISMQQLETCNDIEAAIIAAARAAAAARSTSCSRSNSQEQEQQAKTIRSNSNTNSNP NPNPETKVALPVFMNYNDDDEEDDESLQELSFMADLKDAAATTSAEAEAQEVTVLPPP PPSRPAMMTNTELIVDYIANTWNAIANSKYVTYYNEREQET" polyA_site 6276 /gene="tyf" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tcgcaccccc ctaatataag ttttaattta aattgagttt tggaagcagt aacgaagata 61 atagcaaaaa gattaaaaag agatggttta aaagttagta cctgatgtca tctcgctctg 121 gccaaagata ttgttgggtt ctcaaaaaga caaaatacga tacctgggaa gatagcgatt 181 ttaatgatct cgacgacgca tcattgaaga aacttctcga ggaggcatat tggtatcgaa 241 atcctggcga caggaagaac aagagcgagc gatttctgca aatgctcaaa aaggctgagt 301 acgacgagga gatctcttat cgtgccatca aatcctgcct cacactcaac ccatccgcac 361 tagcgtccag tgcagcagcg gcggcagcag gctcgagcgg cgggggcagc agcagtgcag 421 ggcacaacag cggctacagc tccacctcca cctccaccaa tcaccggtcg acggatcccg 481 gccagcagcg gcacaagcag ggcggctccc tgcaggatct cgtcgaggcg gcgcaccgca 541 gtgagctggc caccacctcg gcggcggcgg ctgcagcgac ggcggcggca agccaacgtt 601 tcaactgtga ttaccagctg agtggccgct ccaatcgccg ccagcagcag cagcagcagc 661 agcacaacca aaacgccacc tcctccgcaa ctgcatccgc atctaagaag atcaagaact 721 catccgtctc gggccggcag cgcgaaggag gcagcctgcc cagcagcgtt aactttgagc 781 cggcagctgc catggatgcc aagcagcagc agaagcagca gcagcaggag ggatccggat 841 catcggcagc aggtggcagc aagaaccaca gctgcagcag cctgcccagc catctgggcg 901 atcgggatcc cgaggcgggc atccagttcg acatggacga ggacgaggcg acgggcggcg 961 tcgccattag cggcgtccca cacgactacc tgttggaggt aagcgatgat acgctcaaga 1021 ggtgggacct ccgaatggac ggcagtctct gggagatagc aagggccctc gttaaagcag 1081 atttaagcga taaggcgcaa ttggagcccc agaatccctc gatgacgttc ctgctcgacg 1141 ccctcagtgg ccagcagccc aagcagccga agcagccggc ggaggcccgg gaaggcggtg 1201 ccgccaaaga gttcctaatc gacgacccgc tgcacttctc cgtcctggag gtttcggcca 1261 ggagccagct gcagcagcag gcccactatc tggccgccct aaccgggcaa ttcggtctcg 1321 ggctggagga gcagaagcgc aaggtggagg ccggctatgt gtcgctcaac gacaactaca 1381 cggcctgctc ctcggtttac ggcggcggcg ctggttcgcc agctgccatc gagggcagca 1441 agccctcgac ttcctccgcg acctcttccg gcggcagcaa ctgcggcggc ggcgcctcct 1501 cctcctccga cgcgctctcc ggcgagctgc gtcccgcgaa gattggacgc atggtcgctg 1561 gagcagcgtc gacggcagct gcgtcgatgg gtggcaaggc cacaacgcgc cagctggacg 1621 agaatggcaa tgccttgagc gatggctttg gaggagccac tggagtggcc accagcagca 1681 atggaaacca gttcacggcc ttgataacca ccacagtggg cggcagtgcc accacctcct 1741 cctcgtcggc cgcccaccgt cagaatagcg tgtccacgct gctctccacg ggcacgaaca 1801 ccaccaccac ggccatggca gccgcagcgg tggctgcatc ctacagccag ctgcaacagg 1861 cgcccagcgg tggagctgtt gctgccgggc cgggaatagg cattggcatc cagcagaatc 1921 ccaccaagca gaaggccaag aagaagtcgc agcaggagag gaatacgacc accgtggacg 1981 tggagtcggt ggccggctat cggggcaacg atcccgtcga gcagctggtc aagtacatcg 2041 agaacgatgt gaatggcgga ggcgggaaca ctgcagcggg gcagcgcaag aaggagcgca 2101 agaagcagaa caagctcaag aagagcaact cgctggagga gctgcgcagc tgctcgaaaa 2161 tggaggtgga cgatttgaag cgccagtcgg cgaccacgga gatgatgcgt cagaagaagg 2221 gcccaaataa tgctggccca agcggcactt cctcctccgc cgccgccgcc ggtggcaagc 2281 acaattcggc ctccgtggcg gacataaaca agaattgcaa caaggagcag cagcaggtgc 2341 aggtgcaggt gcggaattcg agcagtaatc cgggcggaac gcagcagcgg aagggcgagc 2401 ggcgatcgtg gggcaccgag gagctgcagt acctgggcga ccgccaggaa atgtctgcag 2461 cctggtcgga acccgaatcc ctggcccaga agccactcac ttcgctgccc gccttaacgc 2521 gcatgtccga gctggacgcc ctgaacactg tgctctccga aacggccgag ttccatgtgg 2581 tgaccaagaa gaagaaacca aagaagcaac gcgccgtcac catggacgat gcggcggtgg 2641 cggtggcggc ggcggccacc acgggtggca atttgcagcg catgcagcag atcaccaagt 2701 cggcctcctc gaacatgatg tcccagcgga tgcactacta caccagtagc aacaacaacg 2761 gaggaggagc aggagtagct acctacaagc agcagcagga gcactaccag gcgcagcagg 2821 gccagcacca tcatcatcat catcatcacc accaccatca tcaccatcat ggcggctcgg 2881 cggtttccaa tcaggtggat ggatcgcgtc gcaagtccac ctcctccatg ccgccgtcgg 2941 agaagtccga ctccagtgat ctcgactcgg tccactcgct gcccatccag acgggcaaga 3001 agaagagcct gggcggcggc ggcggcaaca acaagcagcg ggcggcgcag gccgccagtc 3061 agcggcaggc gaagcaaaat aatagctcac cggcgcccat ttcgtatgcg gatattgcgc 3121 gcaacaagca ggaggctttg aaccaggccg cggccagcga cacggaactg gagctcaagg 3181 gcagcaagtc caagtcgcgg cccgactttc cagagctgcc agcagggaat cagcagcagc 3241 agcaaccgat cgttgtcagc aatcaaaata cggcgccgtc ctcgtccagt tcgattagct 3301 actcgcagag cctgaatgcc acgcccgcca gcagcagcag cgatgcggag tcgctcaact 3361 ctccagagct ccaagtggta gcctgcagcc tggccacgtc cacgagcagc tgcggcagcg 3421 gcagcagcag cagcagttcc agcgccagca cctcctccac agcctcctcc tccgcctcgc 3481 cgcccgcgct gcagaagtcg aagagcgtgg agcacgacgc cagctacagc tgcacaagca 3541 gcaacctgga ccagcagtat ccggcgctgg agaagaccgt caagcggcac agcaccaaca 3601 atgtgtccgt ggccgtcgcc tcctcctcgg cttcgctgta caactttgca gcggcagcca 3661 agcagcagct ggcggagaaa gccgctgcag caacaactac tacctcaact gcagtttcag 3721 ttccagctgc tcctggttcg tcctcgactc cctcgcctgc tgtcaagttg aaggccaagc 3781 caaaggagct gtctcccagc agcagcagca gcagcaagaa gcctcctaaa gaggaggcga 3841 cgtcgtcttc gtccaaggcg accattagca ccagcaccac gaccacgacc acgcaaaaga 3901 ccacggctgc cacgcagacc gagggagcca agaagctcag cagcagtagc tgcattgcca 3961 agggagccgg tgccgttttg gaggccaccg ccggcaggag ggcggtgatt atactcaacg 4021 atgatcgcga ggcgggcagg agcaacaacg agttcatttt cggggacttt aacgaggatg 4081 agctgaagct gttcgacgat aatttagagg atgaagtgca ggccgcgaat aagcagcagc 4141 aaacggaggc ggaagatgag gcggaagatg cagatcaaac agaagtggag agccgggaaa 4201 aggaatcgca gcagctgaat gattcggggg ccgcttcaga tgcagtcaac agctcggcca 4261 gcctggatat gctctcgatt tcggcggaga cgggacaatc gtcgccgagc gccgccagtc 4321 tgattaactc gtccacgccc tcgggctctt cgtccgcgtc ggccagcacc tccacctcgt 4381 cgtcctcgat ttcgtcctcc tcctcctcgg gcagcaacgg caacggcgcc gcctgtctgg 4441 cctccatttc gggcatgctc ggccaatcag tggccaatca gtcgggggat agcggcatct 4501 atgccgcagc caatacgtcc atcaaggagc aggtcaacaa tttcctcagc aaggcgagca 4561 gcagcgagga gacgctgccg agcaccaact cgatttcgat gcagcaactg gagacgtgca 4621 acgacattga ggcggccatc atagccgccg cccgtgcggc agccgctgcc cggagcacca 4681 gctgcagtcg cagcaactcg caggagcagg agcagcaggc caagacaatt aggtcgaatt 4741 caaatacaaa ttcaaatccc aatcccaatc cggagacgaa agtagccctg cccgtgttta 4801 tgaactacaa cgacgacgac gaagaggacg acgagagctt gcaggaactg agcttcatgg 4861 cggaccttaa ggatgctgcg gccacgacgt ccgcggaggc ggaggctcag gaggttactg 4921 tgctgccgcc gccgccgccc tcgcgaccgg cgatgatgac caacacggaa ctgattgtcg 4981 actacatcgc caacacctgg aatgccattg ccaatagcaa gtatgtcaca tactacaacg 5041 agcgggagca ggagacctag aaatcagatc agcaacagca gcagcagcag caacagcaac 5101 accaatcgca atagcaacgt cagcaatatc ggcagctgag aacaggagag aggagtttag 5161 ttcgaattgc atgttccgat gtttatattt cacttttttt ttttttactt tgtgctgggc 5221 catcgtttat acatctaccg atatcgtaca tacactataa ataattgcta taacaatacg 5281 cttttatgct aattaatgta acgaatcaat ggattcgagc gcggcagcgg aggatcagga 5341 ttgtcaggat tgcaggattg tcaggattgt cagggtgtgt ctgtgtttcc agtatgaatg 5401 cgagcgagtg cctgagatta ggagtatagg atctatttag atgcaggtcg ataatcgcca 5461 ggagaagatc gaacacgaac cctcaaaccg ttcgtacagc tgtgaataag aagggaaaca 5521 ttactaggaa agaggaaatt agaagagaaa gtaatcagaa gatcagagga tcgaaaacaa 5581 gctacaagtg gatatttatt taacgttagt tgaccgcgat ttaacgatgc gatgcatagt 5641 gatgttcaat caagcatttg gatctgcttt tgttaattta caaccttctg gctccttaaa 5701 acgcaacgtt ttaccattac tattactatt actgtacttt aattattatt actactatta 5761 cgcaagcgtt tttttttgtc tttgtttttt aaacgcccca cgagatcatc ggagggcgtg 5821 ctatattgca aaagcagaaa ttaaaactaa tcctagttct tagacagagt caacgtcgcg 5881 tgtacatata tatatgagac cagaagttta ggaggcagtt cgaccattga gtttatgtgt 5941 tagagagagg aaagaaagaa agaaagaaag ccccacggaa aatatttgat atgtgtgtgt 6001 atgataacga ctatttaaag taaactatgt aaggcccgct ccttagctcc ggctagccat 6061 aaataagcct catgaggaaa gtatgttaga cagcataacc gcaaaacaga aaacagaaaa 6121 ccacaaaaaa ccagcaaaaa cactaaaaac tattatgcac ttacgaaaaa tgccgccgtt 6181 tagcagggag agcctcagaa ggtctctccg aagggtaaaa aataaaagaa ggatagtaga 6241 tatcgtaacc attaaaacag aaaatcgtaa aaaaac