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LOCUS XM_070218829 3427 bp mRNA linear INV 09-DEC-2024 Beadex (Bx), mRNA. ACCESSION XM_070218829 VERSION XM_070218829.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq; corrected model. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..3427 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3427 /gene="Bx" /note="LIM domain-containing protein Beadex; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108060980" CDS 648..1910 /gene="Bx" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon" /codon_start=1 /transl_except=(pos:1596..1598,aa:OTHER) /product="LOW QUALITY PROTEIN: uncharacterized protein Bx" /protein_id="XP_070074930.1" /db_xref="GeneID:108060980" /translation="MMTMDITKTEPGLVGLSSNQQQQQQQSQQSNAGMNSGGQNNGPN PNGNGNVVNVVNSGGAGGGNNGNGNVQSIAAAANNNNNNNNNGSQLCAGCGKHIQDRY LLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSK VIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVFASM ANHPMLKRHVSSLGQGSPTGAAGAQNSAGGLLGGGPGGPGNVNGVGVGGMVNGPRTPG DHNNNNNGPQTPTGGGSPFAAAAAAAAAAAHMKNQLGASSXNKALGMGATGAVVSGVG GSGVGVGATSQQFYSGFGLQHQHQQHQQHQQQQQQQLMGLGLGMGGGGVGGGAGSAGG GGTGAGGGGVGSIGSGCKRYQRKFYNRN" misc_feature 918..1082 /gene="Bx" /note="The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3); Region: LIM1_LMO1_LMO3; cd09388" /db_xref="CDD:188774" misc_feature order(918..920,927..929,981..983,990..992,999..1001, 1008..1010,1068..1070,1077..1079) /gene="Bx" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:188774" misc_feature 1110..1274 /gene="Bx" /note="The second LIM domain of dLMO (Beaderx); Region: LIM2_dLMO; cd09390" /db_xref="CDD:188776" misc_feature order(1110..1112,1119..1121,1176..1178,1185..1187, 1194..1196,1203..1205,1260..1262,1269..1271) /gene="Bx" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:188776" polyA_site 3427 /gene="Bx" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cttcggcgct ggcggttgtg tgtgcgcgcg tgcgaataaa aataaaataa agtatagaaa 61 cagcagcaag tagcgaaatc ataacaaagt cacggaacat tgtttatttt tttcctgtgt 121 acatgccaca aagaaacaac aacaacagca acagcaagaa agcaagtgcg aaatatgcaa 181 atttatgagc taactaattg agtcgagtgt gcgtgtgtgt gtgtgcgtgc gtgtgtgtgg 241 caggtgttta tcaatctctc tcgctctctc tctctctcgc agtgatcttg cacccacaca 301 aatagcgaat aactaacaaa taacggtaaa tgcaaatgcc agttgcctga tctcacacta 361 tctccttctc gcccactccc actcaatctg cacccattat ctccctctca cacgcgtgtg 421 gcgagaattc gcattcaatt agcacaaaaa ttgaataaca taaacaatac gcaaaaacgc 481 attcctgtgt gcaacaacaa ttgaattgaa taacgaccgg gaccgcaagc taaataaata 541 aatacaaatt ttacaaaaac acaaggcctt gtgcttcctg cgaaaaagca gtaacaacaa 601 caacaactta aacaaccagc aggaacaaca actcaatttc tgcatatatg atgactatgg 661 acattaccaa aaccgaaccc ggactcgtcg ggctttcctc caaccaacag cagcagcagc 721 agcaatccca gcaatccaac gccggcatga acagcggcgg ccagaacaac gggcccaatc 781 ccaatggcaa cgggaatgtg gtcaatgtgg tcaactccgg cggagccggt ggcggcaaca 841 atggcaacgg gaatgtccag agcatcgccg ccgcggccaa caataataac aataacaaca 901 acaacggtag ccaattgtgc gcaggatgcg gcaagcacat ccaggatcgc tacctcctgc 961 gcgccctcga catgctgtgg cacgaggatt gcctcaagtg cggctgctgc gactgccgcc 1021 tgggcgaggt gggctccacg ctgtacacca agggcaacct gatgctctgc aagcgggact 1081 acttgagatt gtttggcaat acgggctact gcgccgcttg cagcaaagtg atcccagctt 1141 tcgagatggt gatgcgtgcg cgcaccaatg tctaccacct ggagtgcttc gcctgtcagc 1201 aatgtaacca cagattctgc gtgggcgacc gcttttacct gtgcgagaac aagatactct 1261 gcgagtacga ctacgaggag cgtctggtct tcgcctcgat ggccaatcac ccgatgctga 1321 agcgccacgt ctcctcgctg ggccaaggat cgccgactgg agcggctggg gcgcagaaca 1381 gtgccggcgg actgctgggc ggcggacccg gtggaccagg caatgtgaat ggcgtgggag 1441 tgggcggtat ggtgaatgga ccgcgcacgc ccggcgatca taataacaac aacaacggac 1501 cacagacgcc aaccggcggc gggtcgccgt ttgccgcagc cgctgctgcc gccgccgccg 1561 ctgcccatat gaagaatcaa ctgggagcgt ccagctaaaa taaagccctg ggcatgggcg 1621 ccactggggc tgttgtatcg ggagtcggag gatctggagt tggagttgga gcgacgagtc 1681 agcagttcta ctcgggcttt ggactgcagc accagcacca gcaacatcag caacatcaac 1741 agcagcagca gcagcagctc atgggcttgg gcctgggaat gggcggagga ggagtgggag 1801 gaggagcagg atccgccggt ggaggaggaa caggagcagg aggcggaggc gttggcagca 1861 tcgggagcgg ctgcaagcgc taccaaagaa agttctacaa ccgcaactga aagggaatcg 1921 acgggggaga atcgacgcta ggggaaagga tacagaaatc cagaatcgat attcaaatct 1981 tcgtttgctt tgactgagtt caagttttat agatttaaag gcttattagt ttagtagtag 2041 gctaactcta gcctacacaa aagtacttgc tgaatttgca gacatttttg gatctactat 2101 cgtttaagcg agagaatatg tttacttagt tctattcgag aagatagcac cctatatttt 2161 ttttttgttt ccactgaaac ctgtacatat tttccttgta aactgttgac tttttagcga 2221 gaacattttt ttttgtattt cgatatactc caccttatag atatattcgt atttatctat 2281 gtatatgcat aaataatttt attttcacgc tcgaagcgtg cggtgccaaa acaaattcaa 2341 agcagtgcca aaaagtttaa aaataaacga aggattaaaa tgaagaaagt gaagaaggcg 2401 gctggaggat aggatttttg ggacttgcga aatcgagatc cccaccgatc aatgttcgag 2461 atttcaagcg agttccttga atcccagagg agtcgcagga aacaagaagg tagagacgat 2521 gttagagggc aattggcaaa gtgaactttg atgtgtaaat attgaaacat tctgcacacg 2581 acttaagcac acatgatttt tgttctgatt ccattttaag tctgttggag caacgttgtt 2641 gattattatt taagtttagt ttagtgcgag gctaaagaat gttctttcca cggcgaacgt 2701 tgtatagaag agcagctgga tgaaggtgga taatccaatc cgatgatcga tgatgagcca 2761 gcgttagatg taaagagaga gcctaagcta ggacgatcta gaattaagga tctgtgcgtg 2821 tgtgtatgta tcgataacca agcgaactag ttacaatatg ggtgtattta ttaatccttt 2881 ttttttgcgc aatctaatgt aacactaatc aacatgcgta attagcgttc gatcggagct 2941 agcgaatata ctaagtaaag ggagaaacca aagtgtgtgt ataagcatca gtctatctac 3001 gagcgataaa cgataaatga taaacaatac tacctatcta tcgaattacc gaaactatgt 3061 taaatatcgt aataatcgta ataatcagac ctaagtaaga gcgattaccc aatatttttt 3121 ttgtatcgta ttgttagaga gcaggcataa agttaaatca aaaatatcta aagtgtaaga 3181 taaacccgct tagacttata tatacgtgca tatacataaa acataaaaca aaaacacccc 3241 atactccgtg ttttggacag caacaaaatt ataaacagcc agaacaaatg ctaaatgcaa 3301 ataaaagaaa tcaaaactaa agagaaaaga gagtaaaaaa cgtaaaaaaa caaaaatata 3361 aaacaaagca aaggctaaaa acaaaaggaa acaataaatg taattaacaa acatttgaaa 3421 aaattaa