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LOCUS XM_070218822 7780 bp mRNA linear INV 09-DEC-2024 hat-trick (htk), transcript variant X1, mRNA. ACCESSION XM_070218822 VERSION XM_070218822.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7780 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7780 /gene="htk" /note="AT-rich interaction domain hat-trick; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108066010" CDS 79..7458 /gene="htk" /codon_start=1 /product="pneumococcal serine-rich repeat protein isoform X1" /protein_id="XP_070074923.1" /db_xref="GeneID:108066010" /translation="MYQSNSRITTLTYLRNQRTQKMKQMDDPPSLPVGTEVSAKYKGA FCEAKVSKVVRNIKVKVAYKQGLGSGIVSDDAIKAPTGQLRVGAVVEVRHPDRKEIVE ATITKIQDCSQYTVVFDDGDITTLRRTALCLKSGRHFNESETLDQLPLTHPEHFGNPV VGGRRGRRRGHLNEDSSEDDEESDAKEVVNEKEENIGKVVCVETESKKKDKEKWFPAL VVAPTAQATVRIRVKDEYLVRSFKDGRYYTVPKKEATEFTREVASKQDVPAVQAALEF LDSSILPAHWDRDSLFGLSNISSDDEGEIDSDSSDDEPHEEKDRFVAQLYKYMDDRGT PLNKVPSIQSRDVDLYRLFRAVQKRGGYNRVTSQNQWKLIAMRLGFTPCTVSVMNLVK QAYKKFLQPYGDFHRKLGCSMLMTSRNSNRSKGRSLVRANSVASPKPMETTKTETISK LAQPNQTNVVASTSAAAVAVAASSTPARAVSIASQSAAEESGNTSESSVVVEPPKKQR KGSAASSQQGKVKSLVEKYEEKSTAGQSSAAVASVASSGAAASGSSAAATTATPVAAT TPSLGASGAAAAAATSSSLVTGNAANNKDAESDLPLAKIKAAAAAAASSSSSTSRHSM EKETNISSGSSASASSREMQRSRDASPSVPGPPPSGGSSSAGAATAQPASTKKEKHQR SKQVDKDKDKDKEKDKEEKQPGSGKRKKEKISVEKIDTGDFVVGIGDKLKVNYHEKKS PSSHGSTYEAKVIEISVQRGVPMYLVHYTGWNNRYDEWVPRERIAENLTKGSKQKTRT ISTSSANSGSGGGGGSGSLSQQVPPGVADKLVKDGSSKIPPSAGNSSATGAPSQPGGS LGGASSTPSLLSTVVRTPTTTTTTATTGGAKRGRGRSDSMPPRSTTPSSGVVATNSAR TKSPAAAASQMKKRPTRVTPGTNTPRRVSDASMASESDSDSDEPVRRPKRQQSAKEKP QTGKAAQQGGKGRVGSRASSTAPANHPSDDSEEEDEEEEDAAPSKQQTTSVRGSRAGG NRAMSSGAASAKGRDYDLSEIRSELKGFQPKLLAKAVVNQEQKENAKKESSDEPANLP DIKKEPKQESSAKSSSTELSSETESYVDEDSQSSDYRKQAKGAGKKEPLKSSLVVKEE PLKLEPKTELKEEEAKSKPFLSGADIKPTALIAPARFGNTSANQAATSSGSTSTTPKY TSVIVEKHLTIGGKKTAEQQAGKKQDPVKKQSIGAATSSSQESKKFAEPVASLKVELP AACSPSSSSSSSSSFCSSGSAVSSSSATRSLPDMSKLEISSGAGATTPVATQPANATN AKESKYSSSGAGGAGGAVAAGGSGLSMRKLLSSDVYEFKDTEPFEFEKRISPMASVGG TAPAGATGAIGTVVTPPGAASVITAVMPAVGVAGTGGTASTSPAAPVVSSAARKLALK ASAMQQSLEQHQLPPAGHERGYTGMPTALTATKLKKRGSPLKEAALSLEKPKIYKLDK EQVQQQPAEQKQLTPPTLKVLQPAGQVTPSSSNAIKMHTPPGAGAAAAAGSPSQLAPH HATPFDALRKSPSFNLNITALNEELAQTVQETTRALTDALQPPEPLPPPPASAINQAA PVITPTPPAALSCPSTPPTSSNSVLASPKLQTPPQASGKQPPAPPHIVGSPFIETRNV FELSTSNEGSGYSSGESKDNKLEKLENVKILLAGAAGAAFDLDAGSYEQKTSSIADKV LKAISQKKEEVEKENSKSKPPVEAIVEEVVPNPPPAKLELCSSAIKLDTLKMLSEPLK IQTGPLLGELYRPGPATSSPETKSLLESSLPAKNSELSETIQKLECAIQQRKTPVGGA LSSLASSTAGTPPTAHTPNSTATAGAGFSDESMDSTDSEQRLVIEDVIAEEQTTTTTT GEQKSPGSGQEEAQTAAVVTAVTAETEGTSSSTPTPPVPAPVKLEVGGKGVQPGIQAP IALKPTEGSSFAGKLPPLAKLQPQQQQEEVATKSIGSSFGIPIVLPEIPASVVVATPA LMVSSAAAIRHSPGSTPSSPAPVLMSPKGFITTAPKVEGEVGGLLLKAYTAGVPVAGS VIATTGGGAATVISSFNQQQQQQQQQQQQPTTTSVPPAAPEIPASYILDAEMAEAPNS SAPVVARPFVMHAVGKELFNVATPAASSPLISDPHNESINLLCEETIPGSPAPNYGGA EQLPAAAVNSALAIVGITPLPPDTPPAGKTVEINPSAPNSSPDSASQDESGEETKKSA EHGNEEDSSGLGALNKRKRTRKPLPMSAQTAAAVAAQLQSLGKRRRQVSGMRSQKTTA TTAGSDTDDNSDNIAPTAGQQQQQQQRQSARQQMLPQSNAQQQQQQQQQQQQQQQLLQ QQQQQQASLQQGIQTGNTPGVRPCPYNFLVELDPALSSDECITILRKQIQDLRKAYNT IKGELTVIDRRRKKLRRREREKKQQQMQSQQQGKICA" misc_feature 169..321 /gene="htk" /note="first Tudor domain found in AT-rich interactive domain-containing protein ARID4 family; Region: Tudor_ARID4_rpt1; cd20389" /db_xref="CDD:410460" misc_feature order(199..201,208..210,214..216,265..267,274..276, 280..282) /gene="htk" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:410460" misc_feature 334..495 /gene="htk" /note="second Tudor domain found in AT-rich interactive domain-containing protein ARID4 family; Region: Tudor_ARID4_rpt2; cd20390" /db_xref="CDD:410461" misc_feature order(358..360,370..372,379..381,430..432,436..438, 442..444) /gene="htk" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:410461" misc_feature 649..930 /gene="htk" /note="RBB1NT (NUC162) domain; Region: RBB1NT; pfam08169" /db_xref="CDD:462390" misc_feature 1027..1284 /gene="htk" /note="ARID/BRIGHT DNA binding domain; Region: ARID; pfam01388" /db_xref="CDD:460187" misc_feature 2269..2451 /gene="htk" /note="chromo barrel domain of retinoblastoma binding protein 1, and similar proteins; Region: CBD_RBP1_like; cd18641" /db_xref="CDD:350843" misc_feature order(2320..2331,2374..2376,2380..2391,2401..2403, 2407..2418,2422..2430,2437..2442) /gene="htk" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:350843" misc_feature order(2320..2322,2380..2382,2389..2391,2401..2403) /gene="htk" /note="putative methylated histone tail binding site [chemical binding]; other site" /db_xref="CDD:350843" misc_feature order(2371..2373,2377..2394,2398..2412) /gene="htk" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:350843" misc_feature order(2371..2373,2380..2382,2392..2394,2398..2400, 2410..2412) /gene="htk" /note="putative RNA binding site [nucleotide binding]; other site" /db_xref="CDD:350843" misc_feature <2572..>2964 /gene="htk" /note="transcriptional regulator ICP4; Provisional; Region: PHA03307" /db_xref="CDD:223039" polyA_site 7780 /gene="htk" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aaactctctg acaaatttga atttgccaaa tatcacattt ctaatttctc gaatctcctt 61 tcttaaatat aaaacaaaat gtaccaaagc aattcacgta tcactacgct aacatatctt 121 cgaaaccaga gaacccagaa gatgaagcaa atggacgatc cgccatcgct gcccgtgggc 181 acggaggtga gtgccaagta caagggcgcc ttctgcgagg cgaaggtcag caaggtggtg 241 cgcaacatca aggttaaggt ggcctacaag caaggcctgg gctcgggcat cgtctccgat 301 gacgccatca aggcgccgac gggccagctg cgcgtgggcg cagtggtcga ggtgcgtcat 361 ccggatcgca aggagatcgt cgaggcgacc atcaccaaga tccaggactg ctcccagtac 421 acggtggtct tcgacgacgg cgacatcacc acactgcggc gaacggcttt gtgcctcaag 481 agcgggcggc acttcaacga gagcgaaacg cttgaccagc tgccgctgac ccatccggag 541 cactttggga accccgtggt gggcggtcgc aggggcaggc ggcgcggcca cctcaacgag 601 gacagctccg aggacgacga ggagagcgat gccaaggagg tggtcaacga gaaggaggag 661 aacatcggca aggtggtgtg cgtggagacg gagtccaaga agaaggacaa ggagaagtgg 721 tttcccgcct tggtggtggc gcccacggca caggccaccg ttcgcattcg cgtcaaggac 781 gagtacctgg tgcgctcgtt caaggacggc cgctattata cggtgcccaa gaaggaggcc 841 accgagttca cgcgcgaggt ggccagcaaa caagatgtgc ctgctgtgca ggcggccctc 901 gagttcctgg acagcagcat tttgccggcc cactgggacc gggactcgtt gttcggcctc 961 tcgaacatct ccagcgacga cgagggcgag attgactcgg actcgtcgga tgacgagccg 1021 cacgaggaga aggatcgctt tgtggcccag ctgtacaagt atatggacga taggggcaca 1081 cccctgaaca aggtgccctc cattcaaagc cgcgacgtcg atctctatcg tttgtttagg 1141 gcggtgcaaa agcgaggcgg ctacaaccgc gtcacctcgc agaatcagtg gaagctcatt 1201 gccatgcgcc tgggcttcac gccctgcacg gtgagcgtga tgaatctggt gaagcaggcg 1261 tacaagaagt tcctccagcc ctatggcgac tttcaccgca agctgggctg ctccatgctg 1321 atgacctcgc gcaactccaa tcgcagcaag ggccggagtc tggtgcgggc caactcggtg 1381 gcctcgccaa agcccatgga gactacgaag acggagacca tcagcaagct ggcccagccc 1441 aatcagacca acgtggtggc ctcaacttcg gcagcagcag tagcagtagc agcctcttct 1501 acgccggcga gagccgtatc catcgcctcg cagtccgctg ccgaggagtc gggcaacacc 1561 agcgagtcca gcgtggtggt ggaaccaccc aagaagcaaa ggaagggctc ggcggccagc 1621 agtcagcagg gcaaggtcaa gagtctggtg gagaagtacg aggagaagtc aacggcaggg 1681 caaagctcgg cggctgttgc atcagttgcc tcctcgggtg ccgctgccag cggatcttcg 1741 gctgcagcca caacagctac tccagtagca gccaccacgc catcattagg agcatctgga 1801 gcagcagcag cagcagccac ttcatcctcg cttgttactg gaaatgctgc aaacaacaaa 1861 gatgccgaat cggatctgcc gctggccaag atcaaggcag cggctgcggc ggccgcctcc 1921 tcctcctcct ccaccagcag gcacagcatg gagaaggaga ccaacattag ctcgggcagc 1981 agtgcctccg cctccagcag ggagatgcag cgcagtcggg atgcctcgcc atcggttcct 2041 ggtccacctc cctccggagg aagctcgtcc gctggagctg ccaccgccca gccggcgtcc 2101 accaagaagg agaagcatca gcggagcaag caggttgaca aggataagga caaggacaag 2161 gagaaggaca aggaggagaa gcagccgggc agcggcaagc ggaagaagga gaagattagc 2221 gtggagaaga tcgacaccgg tgactttgtg gtcggaattg gggacaaact gaaggtcaac 2281 taccacgaga agaagtcgcc cagttcgcat ggcagcacct acgaggccaa ggtcattgag 2341 attagtgtcc agcggggagt acccatgtat ttggtccact acaccggctg gaacaatcgc 2401 tacgatgagt gggtgccgcg cgagcggatt gccgagaacc tgaccaaggg atccaagcag 2461 aagacccgca ccataagcac cagtagtgcg aatagcggta gtggtggtgg aggaggcagt 2521 ggctcccttt cgcagcaggt tccaccggga gtggcggata agctggttaa ggatggttcc 2581 tccaaaatac caccttcagc gggaaattcc tctgcaaccg gagctccctc tcagccagga 2641 ggaagtctgg ggggagccag ctccacgcca tccctgctgt ccacggtggt caggacccca 2701 acgaccacaa ccacgacggc gacgacggga ggagccaagc ggggacgcgg acgcagtgac 2761 tccatgccgc cccgctccac cacaccctcg tcgggagtgg tggctaccaa ctcagctcgc 2821 actaagtccc cagcggcggc ggcatctcag atgaagaagc gtccaacgag agtgacaccg 2881 ggtaccaaca ctccgcgtcg cgtttcggat gcctcgatgg cctccgaatc ggattcggac 2941 tccgatgagc cggtgcggcg gccaaagagg cagcagagtg ccaaggagaa gcctcaaacg 3001 ggcaaggcgg cgcagcaggg cggtaaagga agggtgggca gtagggcctc ctccacggca 3061 ccggctaacc atcccagcga tgattccgaa gaggaggatg aggaggagga ggatgcagct 3121 ccctccaagc agcagaccac ctctgttcgt ggatcccgcg ctggaggcaa tcgcgccatg 3181 agcagcggcg ccgcttccgc caagggacgc gactatgatc tcagcgagat tcgatcggag 3241 ctcaagggat tccagccgaa gctgctagca aaggcggtgg ttaatcaaga gcaaaaggag 3301 aacgccaaga aggagtcatc cgatgagcca gcaaatctgc cagacatcaa gaaggagccc 3361 aaacaggagt cctcggccaa gagcagctcc acggagctct cctccgaaac ggagtcgtat 3421 gtggacgagg attcgcagtc ctccgattat cgcaaacagg caaagggcgc tgggaagaag 3481 gagcccttga aatcctcgct ggttgtaaag gaagagccac tcaaactgga acccaaaacg 3541 gagcttaagg aggaggaagc caaaagcaag cccttcttgt cgggagcgga catcaagccc 3601 accgctttga tagcgccagc tagatttggg aacacctcgg ctaaccaggc ggctacctca 3661 agcggatcaa cctccactac ccccaaatac acttcggtga ttgtggagaa gcatctaacc 3721 atcggtggga agaaaacagc cgagcagcag gcgggtaaaa agcaagaccc agtgaagaag 3781 caatcgattg gagcagccac tagctcctcg caggaatcca agaagtttgc cgaaccggtg 3841 gccagcttga aggtggaact gccggccgcc tgttcgccct catcttcctc ctcctcgtcc 3901 agttccttct gttcgtcggg ctccgcggtg agttccagtt cggccactcg ttcgctgccc 3961 gatatgagca agctggagat tagcagtggt gcgggagcga cgacaccagt ggccacacag 4021 ccagccaatg ccaccaatgc caaggagtcc aagtacagca gcagtggagc aggaggagca 4081 ggaggagcag ttgccgctgg tggatcgggt ttaagcatgc gaaagctgct atcctcggat 4141 gtctatgagt tcaaggatac agagcccttt gagttcgaga agcgcatctc gccgatggcc 4201 tcggtgggcg gaactgcgcc ggccggagcc actggagcaa ttggaacagt ggtgactcct 4261 cctggcgctg cctccgtgat cacagccgta atgccagcgg taggagtcgc gggaacaggt 4321 ggaacagcct ccacttcacc cgccgcccca gtggtcagtt cggcggccag gaagctggca 4381 ctcaaggcca gcgccatgca gcagagtctg gagcagcacc agttgcctcc agctggacac 4441 gaaaggggat acactggaat gccgaccgcc ttgacagcaa ccaagctgaa gaagagaggt 4501 tctcccttga aagaggccgc cttgagcctg gaaaagccca agatctacaa gctggacaag 4561 gagcaggtgc aacaacagcc ggcggagcaa aagcagctaa ccccgcccac tttaaaagtg 4621 cttcagccgg ctggccaagt cactccctcc tccagcaatg cgatcaagat gcacacgccg 4681 ccgggagctg gagcagcagc agcagctgga tcacccagtc aactggctcc tcatcatgcc 4741 acgcccttcg atgcgctgcg caagtcgccc agtttcaatc tcaacatcac cgctttgaat 4801 gaggaactgg cgcagacggt ccaagaaacc acacgcgctc taaccgatgc actgcagccg 4861 cctgagccac tgccaccgcc gccggctagt gcaattaacc aagcggcgcc agtgataacg 4921 ccaacgcctc cagccgcctt gagctgcccc agcactccgc ccacgagctc caactccgtg 4981 ctggcctcgc ccaaactcca aactccgccg caggctagcg gcaaacagcc gcctgctcct 5041 ccgcacatcg tgggcagtcc cttcatcgaa acgaggaacg tcttcgagct gagcacctcc 5101 aacgagggca gtggctacag ttccggcgag tccaaggaca acaagctgga gaagctggag 5161 aatgtcaaga tcctgctggc cggagcagcc ggtgctgcct tcgacttgga tgccggcagc 5221 tatgagcaga agaccagctc catagcggac aaggtgctga aggccataag ccaaaagaag 5281 gaggaggtgg agaaggagaa cagcaagagc aagccgccag ttgaggcgat tgtcgaggaa 5341 gtggtaccca atccaccgcc tgccaaactg gaactctgca gcagtgccat caagctggat 5401 accctcaaga tgctaagtga accactgaag attcaaacag gtcctctgct gggtgaactc 5461 tatagacccg gaccggcgac cagcagtccg gagaccaagt ccctgctcga atcctcgctg 5521 cccgccaaga acagcgagct gagcgagaca attcagaagc tggagtgcgc catccagcag 5581 cggaagacgc ccgtgggtgg agccctctcc tcgctggcca gctccacggc gggcacaccg 5641 cccaccgccc atacgcccaa ctccacggcc accgcgggag cgggattctc ggatgaatcc 5701 atggacagca ccgactccga gcagcgtctg gtcatcgagg atgtgattgc agaggagcag 5761 acgaccacca caacgactgg ggagcaaaag agtccgggtt ccgggcagga ggaggctcag 5821 acagccgccg tggttacagc ggttactgcg gagacggagg gcactagcag cagcacgccc 5881 acgccgccag ttccggcacc cgttaaactg gaagtgggtg gaaagggagt acagccggga 5941 atacaggcgc ccattgcgct gaagcctacg gagggcagct cctttgccgg gaaactacca 6001 ccgctggcca agcttcagcc gcagcagcag caggaagagg tggccactaa gagcattggc 6061 tcctcctttg gcatacccat tgtgctgccc gagattcccg cctccgtggt ggtggccact 6121 ccggcgctta tggtttcctc cgccgccgcc attcgtcaca gtcccggctc cacgccgagt 6181 tcaccagctc ctgttttaat gtcgcccaag ggcttcatca ccacggcacc aaaagtggaa 6241 ggcgaagtgg gaggattgct gctgaaggcc tacacagcag gagttccagt tgcgggaagc 6301 gtaatagcca ccaccggcgg aggagcagcc actgtcatct ccagtttcaa ccaacaacag 6361 cagcagcaac agcagcagca acagcagcca acgacgacta gtgtgcctcc agctgcacca 6421 gagatcccag ccagctacat tttagatgca gagatggccg aggcgcccaa cagcagtgct 6481 ccagtggtgg cgcgaccctt tgttatgcac gccgtgggca aggaactgtt caatgttgca 6541 acaccggcgg ccagttcgcc gctgatcagc gatccccaca acgagtccat caatctgctg 6601 tgcgaggaga ccataccggg cagtccggcg cccaattacg gaggcgccga gcagctgccc 6661 gccgccgctg tgaactcggc gctggccatt gtgggcataa cgcccctgcc acccgacact 6721 ccgccggcgg gaaagacggt cgagattaat ccatcagcgc ccaacagttc gccggactcg 6781 gccagtcagg atgagagcgg cgaggagaca aagaagagtg ccgagcacgg gaacgaggag 6841 gactccagcg gattgggggc actgaacaag cgcaagcgca cccggaaacc cctgcccatg 6901 agcgcccaaa cggcggccgc cgtggcggcg caactccaat cgctgggcaa gcggcgacgc 6961 caggtgtccg ggatgcgcag ccagaagacc acggccacca cagctggctc cgataccgac 7021 gacaactcgg ataatatagc tccaactgca gggcaacagc aacagcagca gcaacggcag 7081 agtgcccgcc agcaaatgct gccccaaagc aacgcgcagc aacagcaaca gcagcaacag 7141 caacaacagc agcaacagca actgctgcaa cagcagcagc aacagcaggc gtccctgcag 7201 cagggaatcc agacgggcaa tacgccagga gtgcgtccat gtccatacaa cttcctcgta 7261 gagctggatc ctgcgctcag ctcggacgag tgcatcacca tactgcgcaa acagattcag 7321 gatctgcgca aggcctacaa caccatcaag ggcgaactga cggtcatcga tcgccggcgc 7381 aagaagttgc gtcgccggga gcgcgagaag aagcagcagc agatgcagag ccagcagcag 7441 ggcaagatct gcgcctagct cggatggaat ataccgcctc ctactccgtc gaacagcgag 7501 aacatcaatc tggaaacgtc tgcaaattca aatgacctta gagcgccagg aaaaaacgaa 7561 tgaatatcgt tgcgaatggc cgatcacgaa gagccgaaat tgtaaatcta ttgatttttt 7621 ttttccattt ctagttttaa gcgcaaatct atagggttaa gcgaaaattg tgtctgtata 7681 aatacatttc ataagatgta tgtattagta aacaaaagaa aaggaatttt taaagttagg 7741 atcaccattc tacagagaaa gttcaaacag ttttagtcca