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LOCUS XM_070218820 3931 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_070218820 VERSION XM_070218820.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3931 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3931 /gene="Alms1a" /note="Alstrom syndrome 1a; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108054810" CDS 298..3657 /gene="Alms1a" /codon_start=1 /product="centrosome-associated protein Alms1a" /protein_id="XP_070074921.1" /db_xref="GeneID:108054810" /translation="MSSSRHRRPAKSSRVPPQAREYITELAEDRELERFMAFSSTASS GASGSTHSCPLASVLGRRRECPAAEEQLLQLPVSPATSKPNPAQPSTAKTPGSREKTD EYTIIPILMSSSPSRRPVAATQTMSQSVEDLRTPTKPPKEMQTKKTQTPESALKSHKR LEWDPAADVGYYKRAVSTSNISTLERSVLEECGWRQPIQQRSETDLDRLQRQEAEEPS PMPDKPAPPLASSTFVNRSDRGKPSSSRMGSLGSSLSSRREDSEEINHSRSRKEDSSA SSLPKDSRKESARGSSSKEVSQGISTKVDSLGSSRKEEPRLSSRVQDPQVSSRRASVV GSQRESLGSYRRDDSRLNSQNSSRIGSQMSSRVEHSRASSRRESQATSLYGSSAASSF DYHINMEQQQRENESKREPKRKEHDREPKQLAKEQRKAEQREKEREQERQYTAAQFER ILGSRRHENKENQQPQKAAEPAEPTSSTSSVAMGSGSGPRGELDLGIDLLCSLVKTRS LSQGQKKKLVRDIARRISCLDLAESGSSLRSLRSNQSSNTREQPKDPLPVQRQDMATN TSEIGEPVTLPVPAPRKLAITASIPSPLPTSFSNSGSTSASHEVITQKANDAASTDAD GDLQEWLNPMTQSEIEYEQRLKGGAESERRNQLNWIDTEIRRLQALQKLLGDTTTQAA LPRSSVQIETDKGSQCSSDKLLSAVPSVQMPDSERRTPQPPVRVESVGTKELPPPPPH LDQQKPQSRKKMATPVLQSRSSTSGGGRSESVCSFVQQRQRQFREHYQNQQQQQQLLL LQQQQLHQQQQQQKRQHSSEQQQYMQMQYAQAAGSAYATPHLSGSAGYSCADNEGAAI YYQVVNSQGASSYVQAAMVVAGTSPNEGAAAAGGGTSRTTTTTSSSSSMMCISSDISI PMGMVNTCETTTTTTTHQYDDVACQRVRRLPKEARRQPECMQRQTLQVRPQAIAYVIQ FTASGGSEVLPQTRSLQDQLQLARPEFCAKSKQRKAILNQMQMIRNVRRREMDNLLGE NTSLETLDRRLQQLPPPATSRLRVFTTREMKAMTTKRCQSLPEVLAAQNREKEERRRR CNRLMRDVFNKRLQSRVANGQLSLNHSRTII" misc_feature 523..>1401 /gene="Alms1a" /note="transcriptional regulator ICP4; Provisional; Region: PHA03307" /db_xref="CDD:223039" misc_feature 3244..3624 /gene="Alms1a" /note="ALMS motif; Region: ALMS_motif; pfam15309" /db_xref="CDD:464634" polyA_site 3931 /gene="Alms1a" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tagaccgcgt accaattgca tctgctgtcc gataatttaa tttttcaaaa acactgaata 61 ttctttaaaa taatggagga tttctatagg aaagtgcgcc attagattga aggaggaaag 121 tgcattttgt agtggaaaat tagttgcttg ataccatttg gcgggaggtc tgattgaata 181 cagaaaacat aaacaattgc gctttacaag aaaacacagc ttcgaaaact gccataaaac 241 caggtgataa actggctaat ccttgggaac cgccagtgga ggtgcagtag agtcgagatg 301 tccagctccc ggcatcgcag gccggcgaaa tcctctcgcg ttccgccgca ggcgagggaa 361 tatatcacgg aattggccga ggatcgggaa ctggagcgat tcatggcctt ctcctcgacg 421 gcgagcagtg gcgccagcgg gagcacccac agttgccccc tggccagcgt cctagggcgt 481 cgcagggagt gtccagcggc ggaggagcag ctcctgcagc tgccagtttc accggctacg 541 agtaaaccca atcccgccca gccgagcaca gcaaaaaccc caggaagccg ggagaaaacc 601 gatgagtaca ccattatacc cattctaatg tccagcagtc ccagtcgtcg tcccgtggcc 661 gccactcaga ccatgtccca atccgtggag gatctgcgca cgcccaccaa gccgcctaaa 721 gagatgcaga cgaagaaaac ccagacaccc gagtcggctc tcaagtcgca caagcgcctg 781 gaatgggatc cggcggccga tgtgggctac tacaagcggg cggtgtccac cagcaacatc 841 agcaccctgg agcgctccgt gctggaggag tgcggctggc gtcagcccat ccagcagcga 901 tccgagacgg atttggatag gctgcagcgc caggaggcgg aggagccgtc gcccatgccg 961 gataaaccgg cgccaccact ggcttcgagt acgtttgtca atcgcagcga tcgcgggaag 1021 ccctcgagct ctagaatggg ttccctaggg agttccctga gctccaggag ggaggattcc 1081 gaagagatta accacagcag gtccaggaag gaggattcct cggctagttc tctcccaaaa 1141 gattcaagga aggagtctgc gaggggcagt tcctcgaaag aggttagcca aggcatttcc 1201 acgaaggtag actcgctcgg cagctccagg aaagaggaac caagactcag ctcacgggta 1261 caggatcctc aggtcagttc ccgccgagca tcggtggttg gctcgcaaag ggagtcgctg 1321 ggcagctaca gaagagacga ctcgcggctc aactcgcaga acagctcgag aataggatca 1381 caaatgagct ccagagtgga gcattcccgc gccagttcca ggcgagaatc ccaggccacc 1441 tcgctgtatg gcagttcggc ggccagtagc ttcgattacc acatcaacat ggagcagcag 1501 cagagggaaa atgagtcaaa gagggagcca aagaggaagg agcatgatag agaaccaaag 1561 cagctggcca aggagcagag gaaagctgag cagcgggaaa aggagcgcga gcaggagcgc 1621 cagtacacgg cggcccagtt cgagaggatc ctgggcagtc ggcggcacga gaacaaggag 1681 aatcagcagc cgcagaaagc agctgaaccc gctgaaccca catcctccac atcctcggtg 1741 gcaatgggat cgggttcggg gccccgggga gaactggatc tgggcatcga tttgctgtgc 1801 tccctggtga aaacccgcag cctcagccag ggacagaaga agaagcttgt gcgggacata 1861 gccaggcgca tttcctgcct ggacttggcc gaatccggca gcagtttgcg ctccctgcgg 1921 agcaatcagt ccagcaacac gagggaacag ccgaaggacc cacttcctgt gcagcggcag 1981 gatatggcca cgaatacgtc ggaaattggg gagcccgtca ctctgcccgt tcccgctcct 2041 cgaaagctgg caatcaccgc atctataccc tcgccactgc ccaccagctt ctcgaacagc 2101 ggctcaacga gcgcctcgca cgaggtgatc acccaaaagg ccaacgatgc cgcctccacg 2161 gatgccgatg gcgatctgca ggagtggctg aatcccatga cccagagcga aatagagtac 2221 gagcagcggc tgaagggagg cgccgaatcg gagcggcgga accagctcaa ctggatcgac 2281 acggagattc gacggctgca ggcgctgcag aaacttctgg gcgataccac cactcaagcc 2341 gctttgccgc gcagttcggt gcagatcgag acggacaagg gatcgcagtg ctccagcgat 2401 aagctgctgt cggcggtgcc ttcggtgcag atgccggatt ccgagagaag aactccgcag 2461 ccccccgtaa gagtagaatc agtgggaaca aaggagctgc caccaccacc gccccatctc 2521 gaccagcaga agccgcagag ccgcaagaag atggccacgc cagtgctcca atcgcgtagc 2581 tccaccagcg gcggtggccg cagcgagagc gtctgttcct ttgtccagca aaggcagcgg 2641 cagttccgcg agcattacca aaaccagcag cagcagcagc agttgctgtt gctccagcag 2701 cagcagctcc accagcagca gcagcaacag aaacggcagc acagctcgga gcagcagcaa 2761 tacatgcaga tgcagtacgc ccaggcggcg ggcagtgcct atgccacgcc ccatttgagc 2821 ggcagtgccg gctacagctg tgcggataac gagggggcag ccatctacta tcaagtggtc 2881 aactcccagg gagcctctag ctacgtgcag gcagccatgg tggtcgcagg gacatcgcca 2941 aacgaaggag cagcggcagc gggaggagga accagcagaa ccaccaccac caccagttcc 3001 tcgtcctcga tgatgtgcat cagttcggac atatccatac ccatgggcat ggtgaatacg 3061 tgtgagacga ccaccacgac caccacgcat cagtacgacg atgtggcctg ccagcgggtg 3121 cggaggttgc ccaaggaggc gaggcggcaa ccggagtgca tgcagcgaca gacgctgcaa 3181 gtgcgtcccc aggccatcgc ctacgtcatc cagttcaccg cgtcgggcgg cagtgaggtg 3241 ctgccccaga cgcgctccct gcaggatcaa ctgcagctgg cccgtcccga gttctgtgcc 3301 aagtccaagc aacgcaaggc catcctcaat cagatgcaga tgatccggaa tgtgcggcgc 3361 cgcgagatgg acaatctgct gggcgagaat accagtttgg agacgctgga caggcgactg 3421 cagcagctgc cgccgcctgc cacttctcgt ttaagggtat ttaccaccag ggaaatgaag 3481 gccatgacca ccaaacgttg tcaaagtttg ccggaagtgt tggccgctca gaatcgcgaa 3541 aaggaggagc gaaggcgtcg ctgcaatcgc ctgatgcggg atgtctttaa taagcgcctt 3601 caaagtcgcg tggccaatgg acaactctcg ctaaatcaca gcaggacaat catctagcaa 3661 aggtggaaat acgaaatacc ccagtacaca gcccaccagt ttcgtttctt tttttgtgcc 3721 attgttaggc tttctatttt taaaactcta caaatcgttt acacttgttg aaccgcgaaa 3781 taaggaatgc tttagtttat aggaaacgtt gaaatcgaat ataggctata ggctagttaa 3841 ctacaaacat aaatttctat gtttatactg tacaaccagc atttaactaa atttgtaatg 3901 tttttaaatt aaataaattt atcaacacgg a