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LOCUS XM_070218760 7179 bp mRNA linear INV 09-DEC-2024 variant X13, mRNA. ACCESSION XM_070218760 VERSION XM_070218760.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7179 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7179 /gene="Sec16" /note="Secretory 16; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108062963" CDS 181..6465 /gene="Sec16" /codon_start=1 /product="protein transport protein Sec16A isoform X10" /protein_id="XP_070074861.1" /db_xref="GeneID:108062963" /translation="MLHNNAPWLPPHQQQQQQQQQAPQQHATPQQQQQQQQPHPAQQQ HQQHQQLYASQMFQQQQPNYWPEDQQQQQQSLNYNNYFAGQQQQLPLQQQQQQLPLQQ QQPQQPTQQQHNIQQQLYYPTHQQPQVPAPAEPALDSFDNNNSGGGGGGGGWGDWGDW NDNSNNNNSLSNEALLEPSGQLLEDSFNVQSSPGSWQAFATGNSVNNNVELPPPTDQQ AASLPQQPEVGQEPELDAIVPPQAFQNQPPTSLSAFAAPPFAVVAPPAPLAGGVAPPA PLAGVVAPPTDAAGIAPPAALPPSLTPAAGNPFKRSAGLNKRVNIMASPAGGAPSPPA PAVAPLAPPVAPPPGEAHGDGFNLLAAPPVEASPGAPIPAATASLYAQPAVDNQEVLS APNDERAQYLQTSHLSEQLGEGEADQDAGLLPPPGLSRLVLGQPELDSQQQRLVTGAT EQPALDVAQAAALHMQERQADGEDTSDDGGQQVRNIQTPPRRVVTGVETNAPSLREQV LDGENLEDREAIPPPALAELPPTLSVHHNIQPDEPELQLHHINQPPQAVTPQPQQPQQ PQLPLLQQQQPQQQEKKRAAAGGRRANASLDLESEDESDEFLQSERERDRERERRDLM DERQGRGRSHGHYTYDGETEDSVRGAAHHETKSLRETQHRRSNNHDSTRSRRHPAEPK AERERERERERDRERERHWRRRSNKYHSGGEDQERSYDHSRRYNNSNYDGESDNPEIN HLGEGELDGGGTEGRGGGGRSSKTGRSQRRSAAEEPSFDYYEPERDRDHDRQYSRRSN KQPSSADKSRSSGGRRSYENQGRSGRPEEGRRRHQDLRNWDGGYEEYRRKSSRNSDLE KERINGGNTSGGGGGGSGGGGSGSGKRRNQYDQYGGAYDSYSMYEQMSRNPHAYADMY AKFYGQMINSMTAAAVSAAASKSGVPGGAAAAAAAIPGLVPGAVPVSAAQLVAAAAAA SGGSVSGSSEAALLRERERAAAEAAPSTYGGLATAGTVTTTAVARPPRRRTPLQFNRP HLVASYAMSLLLKVKPKYAGRGRLRNDVEVAPPRIRDGTSSLLRMYPGPLQGRKLHKD KIISFCKEQIRLGPTKGCTVLYATQKSPQGSVVKYRASHALMWHLLILLLRQNGYIAD TDVGDLLLENQQEYPYEPSEYEAENEPDVEAEQEAAAPGEKSVESDLDSESAAGAAAA TPEETPAGGATNGGDAGAPQSPLSEQAATDKFRSYVLRGNVEEALQWATDNGLWTHAF FLALYEDRYALTDVAQKFLNRAIKANDPLQTLYQMKSCQTPACVSQLRDEQWGDWRSH LSILVTNKSRQPKYDRSSVVALGDTLFQRGDIYAAHFCYLVAQEEFGRYDSSATELTT LTANVPRLILLGSSHYKHFNEFASNEAIIMTEIYEYARSLFDPKFSIAHFQHYKFLLA TRILDYGQHFRCTNYLEQIARHIELKPESYDIDFIQRVCGLAERLRYHDPILINRVSF ASPPNAASKDSAAPEEKAWLRQLRSLADVPQQEQLQLHHQVQQQQQEQNDIDQQFAEV NKQFRELNMQYDGGNLESTLQTQLPPVEQQQQPAQSEVPPPQQQYYEPPPAAAAAAAQ VPAESDPYGQQQGSYYDPNAGMQHQYDPNAGIQHQYDPNTEAHHQYEHGQIEPASEAY QPAADPSAAPAGYGYDYWSGTQQPPYGDEPALKDEAEEEEDEQQILQQAQQQQQLRVA KQQQEQHTRTNGAANSNNNRFKSNALKQEKGSSITALRKRQEASRTATIAAAAAAIAQ ITPAKVATAAAAATTTAATSAKAFNLNDLQQQQARPAISMPKSKSYGDEDDGGAAHPG QKPTPEAAGKQQASGKQSNSGGDLGAPGNQNAGWFGGLWNKLSLKPKNQMILPDDKNP TIVWDKERKCWTNTEGGTDETESFKPPPKMSDLGMGMPPAMGMGMGMGVGMGAATNPL GSHQPAPLMDQQQQQPQPQQPPSQPQMYGSPIDYTAAPAAPEMIPTVPTPAPLPVPSP APLAAAANPSPAANPGGPQPKLQSNMFKMQRNRTLKNSYVDVFNPSGAPMSAAPENVL APIMAPAAVPQGGFFVPGQQ" misc_feature <811..1545 /gene="Sec16" /note="large tegument protein UL36; Provisional; Region: PHA03247" /db_xref="CDD:223021" misc_feature <814..>1107 /gene="Sec16" /note="Kinetoplastid RNA Editing Protein A (KREPA); Region: KREPA; cl49620" /db_xref="CDD:483960" misc_feature 3406..4635 /gene="Sec16" /note="Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16; Region: ACE1-Sec16-like; cd09233" /db_xref="CDD:187750" misc_feature order(3871..3876,3880..3885,3889..3903,3907..3909, 3913..3915,3943..3945,3949..3951,3955..3960,3964..3969, 3979..3981,3997..3999,4018..4020,4048..4050,4063..4065, 4072..4074,4156..4161) /gene="Sec16" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187750" misc_feature order(4402..4404,4468..4473,4477..4482,4489..4494, 4501..4503,4582..4587,4594..4599,4606..4608,4618..4620) /gene="Sec16" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:187750" polyA_site 7179 /gene="Sec16" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgaaagtcga gttggcattt gggagatttg ctgtgttcgg atcgaaaaaa ttccaaagtt 61 aattgtttaa aagccaagac gactgcttta gcaatcagcc aacaagtaaa tgtattgttt 121 agtcaactgc cagaggacag taccaagtgc gtgtaaataa acgagcgatt tgtatccaac 181 atgttgcaca acaatgcgcc ctggctgcca ccgcatcagc agcagcagca gcagcagcaa 241 caggccccgc agcaacatgc aacgccccaa cagcagcagc agcagcagca acctcatcct 301 gcacagcagc agcatcagca gcatcagcag ctctacgcca gccaaatgtt ccagcaacag 361 cagccaaatt actggccgga ggatcagcag cagcagcagc agtcgctgaa ctacaataac 421 tactttgcag gacagcagca gcaactgcca ctgcagcagc aacagcagca actgccactg 481 cagcaacagc agccacaaca gcctacgcag cagcaacata atatccagca gcaactgtat 541 tatcccactc accagcagcc acaagtcccg gctccagcgg aacccgctct ggactcgttt 601 gacaacaata atagcggcgg aggaggagga ggaggtggct ggggtgattg gggcgattgg 661 aacgacaata gcaacaacaa taatagcctt agcaacgagg ccttgctgga gccatcgggg 721 caactgctcg aggactcctt caatgtccag tcctcgccag gcagttggca agcctttgcc 781 accggcaata gtgtcaataa caatgtggag ctgccgcctc caacggatca gcaggcagca 841 tcattgcctc agcagccgga ggttggtcag gaacccgaac tggatgccat tgtgccgccc 901 caggctttcc aaaaccagcc accaacatca ctttctgcgt ttgctgcacc accatttgct 961 gtggtagctc ctccagcgcc tcttgccggc ggggtagctc ctccagcgcc tcttgccggc 1021 gtggtagcac caccaacgga cgccgctggc attgcaccac cggctgcact gccgcccagc 1081 ttgactccag cggctggcaa tcccttcaag cgctccgcgg gcctcaataa gcgagtgaac 1141 ataatggcca gtccggcggg cggagctcct tcaccaccag caccggctgt agcgccatta 1201 gctcctccag ttgccccgcc tcccggggag gcccatggcg atggcttcaa cttgctggcg 1261 gcaccacctg ttgaggcttc accaggtgcc ccaattcctg cagcaaccgc atcgctgtac 1321 gctcagccag cggtggacaa ccaggaggtg ttgtccgccc ctaatgacga gcgggcgcag 1381 tacctgcaga cgagtcacct gtccgagcag ctgggcgagg gcgaggcgga tcaggatgcg 1441 ggtctgctgc cgccaccggg cttgtcccgt ctggttctgg gccagccgga gctggactcg 1501 cagcagcagc gcctggtcac cggcgccacg gagcagccgg cgctcgatgt cgcccaggcg 1561 gctgccctgc acatgcagga gcgtcaggcg gacggcgagg acacctcgga cgacggcggg 1621 cagcaagtgc gcaatataca gacgccaccg cgtcgcgtcg tcacgggcgt ggagacgaac 1681 gcaccatcgt tgagggagca ggtgctggat ggtgagaatc tggaggatcg cgaagccatt 1741 ccgccaccag cgctggccga acttcccccg acattgtcgg tacatcacaa tattcagccc 1801 gatgagccgg agctgcagct gcatcacatc aaccaaccgc cgcaggcagt caccccgcaa 1861 ccacagcaac cacagcaacc gcagctacct cttctacagc agcagcagcc gcaacagcag 1921 gagaagaagc gggcggcggc ggggggacgt cgcgcgaatg cctcgctgga tctggagtcc 1981 gaggacgagt cggatgagtt cctgcagagc gaaagggagc gcgatcggga gcgcgagcgc 2041 cgggatctga tggacgagcg gcagggccgc ggacgcagcc atggtcacta cacctacgat 2101 ggcgaaacgg aggactcggt acgcggtgct gcccaccacg agaccaaatc gctgagggaa 2161 acgcagcaca ggcggagcaa caatcacgac tcgacgcgat cgcgtcgcca tccagcggaa 2221 ccgaaggccg agcgggaaag ggaaagggag cgggaacggg atagggagcg tgagcggcac 2281 tggcggcgac gctcgaataa gtatcacagt ggcggcgagg atcaggagcg ttcgtacgat 2341 cattcgcgtc gctacaacaa cagcaactac gacggcgaat cggataatcc cgagatcaat 2401 catctcggcg agggagaact cgatggcgga ggcactgagg gaagaggagg tggtggccgg 2461 agcagtaaaa ccggccgcag ccagcgacgc agcgccgccg aggagccgtc gttcgactac 2521 tacgaaccgg aacgcgatcg tgatcacgat cgtcaatact ccagacgctc caacaaacag 2581 ccatcgtcgg ccgacaaatc gcgatcgtcg ggcggacgac ggagctacga gaatcaggga 2641 cgcagtggcc gcccagagga gggtcgccga cgtcaccagg atctgcggaa ctgggacggt 2701 ggctacgagg agtaccgccg gaagagctcg cgcaacagtg atctcgagaa ggagcgcatc 2761 aacggaggca acaccagcgg cggcggcggc ggtggcagcg gaggaggtgg ttccggttcc 2821 ggcaagcgtc gcaatcagta tgatcagtat ggcggtgcct acgattcgta ctccatgtac 2881 gagcagatgt cgcgcaatcc gcatgcctat gccgatatgt acgccaagtt ctacggccag 2941 atgatcaact cgatgacggc ggccgctgtc tcggcggctg cctcgaagtc cggagttcct 3001 ggcggcgcag cagcagcagc agcagcgatt cctggcttgg tgcccggcgc tgttccggtg 3061 agtgccgccc agttggtggc cgccgccgcc gccgcaagcg gaggcagtgt cagcgggagc 3121 agtgaagccg ccctgctgag ggagcgagaa agagctgctg ccgaagcggc accatcgacc 3181 tacggtggat tggccaccgc tggaacggtg accaccaccg cggtggctcg tccgccgcgc 3241 cgacgcacgc ccctgcagtt caaccggccc catttggtgg cctcgtacgc gatgagtctg 3301 ctgctgaagg tgaagcccaa gtacgccggc cgcgggcgtt tgcgcaacga tgtggaggtg 3361 gcgccgccgc gcatccgcga cggaacgagc agcctgctgc gcatgtatcc gggtcccctg 3421 cagggccgca agctgcacaa ggacaagatc atcagcttct gcaaggaaca gatccgactg 3481 ggacccacca agggctgcac cgtgctctat gccacccaga agagtccgca gggcagcgtg 3541 gtcaagtacc gtgcctcgca tgcgctcatg tggcacctgc tcatactgct gctgcgccaa 3601 aatgggtaca ttgccgacac tgatgtgggc gatctgttgc tggagaacca gcaggagtat 3661 ccctacgagc ccagcgagta cgaggcggag aacgagccgg atgttgaggc tgaacaggag 3721 gccgcagctc ccggggagaa gtcagtggaa tcggatttag acagcgaatc ggcagcggga 3781 gcagctgcag ccacgccaga ggaaacacca gccggtggcg caaccaatgg aggcgatgcg 3841 ggagctccac aatcgcctct gtcggaacag gcggccacgg acaagttccg cagctatgtg 3901 ctgcgcggca acgtcgagga ggccctccag tgggccaccg acaatggcct gtggacgcac 3961 gcctttttcc tggccctcta cgaggatcgc tacgccctga cggatgtcgc ccagaagttc 4021 ctcaatcgcg cgatcaaggc caacgatccg ctgcagacgc tctaccagat gaagagctgc 4081 cagacgccgg cgtgcgtcag ccagctgagg gacgagcagt ggggcgactg gcggtcgcat 4141 ctctccattc tggtgacgaa caagagccgc cagccgaagt acgatcgcag ctcggtggtg 4201 gcgctcggcg acacgctctt ccagcggggc gacatctatg cggcgcactt ttgctatctg 4261 gtggcccagg aggagttcgg ccgctacgat agctcggcca cagagctaac cacattgacc 4321 gccaatgtgc ccagactcat cctgctgggc tcctcgcact acaagcactt caatgagttc 4381 gccagcaacg aggccatcat catgacggag atctacgagt atgctcgctc gctgttcgat 4441 cccaagttca gcattgccca cttccagcac tacaagttcc tgctggccac caggatcctc 4501 gactatggcc agcacttccg ctgcaccaat tacttggagc aaatcgccag gcacatcgag 4561 ctgaagccgg agagttacga cattgatttt atacagaggg tctgcggttt ggccgaacgc 4621 ctgcgctacc atgatcccat cctgatcaat cgcgtctctt ttgcgagtcc cccaaatgcc 4681 gccagcaagg atagcgctgc gcccgaggag aaggcctggc tgcgtcagct gcgctccctg 4741 gccgatgtgc cccagcagga gcaattgcaa ttgcatcatc aagtgcagca gcagcagcag 4801 gagcagaacg acatcgatca gcagtttgcc gaggtgaaca agcagttcag agagctgaac 4861 atgcagtacg atggtggcaa tctggagagc acgctgcaaa cgcaattgcc tccagtggag 4921 cagcagcagc agccagctca gtcagaggtg cctccgccgc aacaacaata ctatgaaccg 4981 ccaccagcag cagcagcagc agcagcccaa gtgccagcag aatcggatcc ctatggacag 5041 cagcagggat cctactacga tcccaatgca ggaatgcagc atcaatacga tcccaatgct 5101 gggatacagc accaatacga tccgaatacc gaggcccacc atcagtacga acatggccaa 5161 atagagcctg caagtgaggc ctaccaacca gcagcagatc cttcagctgc tcccgctggc 5221 tatggctatg attactggtc gggcacccag cagccaccgt atggcgatga gcctgcgtta 5281 aaggatgagg cggaggagga ggaggatgag cagcagatat tgcagcaggc acagcagcag 5341 cagcaattgc gcgtggccaa gcagcaacag gagcaacata ctcgcaccaa tggcgccgcc 5401 aacagcaaca acaatcgctt caagtcgaat gctttgaagc aggaaaaagg cagcagcatc 5461 actgcattgc gaaaaaggca ggaggcttcg agaacagcaa ctatagcggc ggcagcagca 5521 gcaattgccc aaataacacc agctaaagtt gcaacagcag cagcagcagc aacgacgacg 5581 gcagcaacat cggcaaaggc attcaatttg aatgatctgc agcaacagca ggctcgcccg 5641 gcgatctcca tgcccaagtc gaagagctat ggcgacgagg acgatggcgg tgcggctcat 5701 cctggccaga aaccaacccc ggaggcagcc ggcaaacagc aggcatcggg caagcagtcc 5761 aattccggcg gtgatcttgg ggcacctggc aatcagaatg ccggctggtt tggcggactc 5821 tggaacaagc tgtcgctgaa gccgaagaac caaatgatcc tgccggacga caagaatccg 5881 accatcgttt gggacaagga gcgcaagtgc tggacaaaca ccgagggcgg caccgacgag 5941 acggaaagct tcaagccgcc gcccaagatg agcgatctgg gcatgggcat gccgccggcc 6001 atgggaatgg gaatgggaat gggcgtgggc atgggtgcag caaccaatcc gctgggcagc 6061 caccaaccag caccgttgat ggatcagcag cagcagcagc cgcagccgca gcaaccaccg 6121 tctcagccgc aaatgtatgg cagtcccatt gattacacgg ctgctccggc tgcacccgag 6181 atgataccca cggtcccaac gccggcgcca cttcctgtcc catcacctgc accgctggca 6241 gcggcggcca atcccagtcc cgcggccaat cccggaggtc cccagcccaa gttgcagtcg 6301 aacatgttta agatgcaacg caaccgcacg ctgaagaact cctacgtgga tgtgttcaat 6361 ccctcggggg cgcccatgtc ggcggccccg gagaatgtgc tcgcccccat aatggcgccg 6421 gctgcggtgc cccaaggcgg tttctttgtc cccggacagc aataggggat taacggaagc 6481 aggagcagga gcctcgcgat ctggagcacc agcagcaggt gtgtgtgcat ggatggagga 6541 tggaggatga aggatggagg aggaggatgt gagagggctg ccacaaatgc caacgagatc 6601 acttcgaaac tacgtaaaaa aataaaaaga aaaaactttt tcaaccggcg aacgctcaca 6661 cacacacaca ctgtcatgca taaaatatac acacacacac acatccatac gagaaaagac 6721 aactttccag caggggaaaa gttgatccta cgatttcttc aagctcctac agtttgttaa 6781 tcttctgtct gtctgtccta tcttgttgtg tgtgtcgctc tactaaatta actcacccaa 6841 ctaaaaatta aacacctaat ttcaccgatt tgtgcgcatg tgaggagtaa gtgtgtgtgt 6901 gtcaggtgcg tgtgtgtgtg cgatcgatgt cctaaagttt agcgaatgat taattgagga 6961 aacgatgaag aaagcgattt atgtacgact agcgaattat atatgtaaat tttctctatg 7021 taaactatac gtcccccgat ccccgagaat ccctctatat cctccacgaa cccccgctgc 7081 cgccttcttc cccgatttct gtttatatac atgtttcttt tgtatgttgc atagttttta 7141 tgattatttt ttgtttagct gtatgaatat gtattcgaa