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LOCUS XM_070218759 7485 bp mRNA linear INV 09-DEC-2024 variant X12, mRNA. ACCESSION XM_070218759 VERSION XM_070218759.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7485 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7485 /gene="Sec16" /note="Secretory 16; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108062963" CDS 181..6771 /gene="Sec16" /codon_start=1 /product="uncharacterized protein Sec16 isoform X9" /protein_id="XP_070074860.1" /db_xref="GeneID:108062963" /translation="MLHNNAPWLPPHQQQQQQQQQAPQQHATPQQQQQQQQPHPAQQQ HQQHQQLYASQMFQQQQPNYWPEDQQQQQQSLNYNNYFAGQQQQLPLQQQQQQLPLQQ QQPQQPTQQQHNIQQQLYYPTHQQPQVPAPAEPALDSFDNNNSGGGGGGGGWGDWGDW NDNSNNNNSLSNEALLEPSGQLLEDSFNVQSSPGSWQAFATGNSVNNNVELPPPTDQQ AASLPQQPEVGQEPELDAIVPPQAFQNQPPTSLSAFAAPPFAVVAPPAPLAGGVAPPA PLAGVVAPPTDAAGIAPPAALPPSLTPAAGNPFKRSAGLNKRVNIMASPAGGAPSPPA PAVAPLAPPVAPPPGEAHGDGFNLLAAPPVEASPGAPIPAATASLYAQPAVDNQEVLS APNDERAQYLQTSHLSEQLGEGEADQDAGLLPPPGLSRLVLGQPELDSQQQRLVTGAT EQPALDVAQAAALHMQERQADGEDTSDDGGQQVRNIQTPPRRVVTGVETNAPSLREQV LDGENLEDREAIPPPALAELPPTLSVHHNIQPDEPELQLHHINQPPQAVTPQPQQPQQ PQLPLLQQQQPQQQEKKRAAAGGRRANASLDLESEDESDEFLQSERERDRERERRDLM DERQGRGRSHGHYTYDGETEDSVRGAAHHETKSLRETQHRRSNNHDSTRSRRHPAEPK AERERERERERDRERERHWRRRSNKYHSGGEDQERSYDHSRRYNNSNYDGESDNPEIN HLGEGELDGGGTEGRGGGGRSSKTGRSQRRSAAEEPSFDYYEPERDRDHDRQYSRRSN KQPSSADKSRSSGGRRSYENQGRSGRPEEGRRRHQDLRNWDGGYEEYRRKSSRNSDLE KERINGGNTSGGGGGGSGGGGSGSGKRRNQYDQYGGAYDSYSMYEQMSRNPHAYADMY AKFYGQMINSMTAAAVSAAASKSGVPGGAAAAAAAIPGLVPGAVPVSAAQLVAAAAAA SGGSVSGSSEAALLRERERYTHAYITQANEFHRQQYKELIYQQQQQQQQQQHHREDPL NSSFNITEDNASFYGSRGGSIYNQYHPYPSLSSARSLSNLNGDGRNSRCGPYYAGSEC GLDIRAAAEAAPSTYGGLATAGTVTTTAVARPPRRRTPLQFNRPHLVASYAMSLLLKV KPKYAGRGRLRNDVEVAPPRIRDGTSSLLRMYPGPLQGRKLHKDKIISFCKEQIRLGP TKGCTVLYATQKSPQGSVVKYRASHALMWHLLILLLRQNGYIADTDVGDLLLENQQEY PYEPSEYEAENEPDVEAEQEAAAPGEKSVESDLDSESAAGAAAATPEETPAGGATNGG DAGAPQSPLSEQAATDKFRSYVLRGNVEEALQWATDNGLWTHAFFLALYEDRYALTDV AQKFLNRAIKANDPLQTLYQMKSCQTPACVSQLRDEQWGDWRSHLSILVTNKSRQPKY DRSSVVALGDTLFQRGDIYAAHFCYLVAQEEFGRYDSSATELTTLTANVPRLILLGSS HYKHFNEFASNEAIIMTEIYEYARSLFDPKFSIAHFQHYKFLLATRILDYGQHFRCTN YLEQIARHIELKPESYDIDFIQRVCGLAERLRYHDPILINRVSFASPPNAASKDSAAP EEKAWLRQLRSLADVPQQEQLQLHHQVQQQQQEQNDIDQQFAEVNKQFRELNMQYDGG NLESTLQTQLPPVEQQQQPAQSEVPPPQQQYYEPPPAAAAAAAQVPAESDPYGQQQGS YYDPNAGMQHQYDPNAGIQHQYDPNTEAHHQYEHGQIEPASEAYQPAADPSAAPAGYG YDYWSGTQQPPYGDEPALKDEAEEEEDEQQILQQAQQQQQLRVAKQQQEQHTRTNGAA NSNNNRFKSNALKQEKGSSITALRKRQEASRTATIAAAAAAIAQITPAKVATAAAAAT TTAATSAKAFNLNDLQQQQARPAISMPKSKSYGDEDDGGAAHPGQKPTPEAAGKQQAS GKQSNSGGDLGAPGNQNAGWFGGLWNKLSLKPKNQMILPDDKNPTIVWDKERKCWTNT EGGTDETESFKPPPKMSDLGMGMPPAMGMGMGMGVGMGAATNPLGSHQPAPLMDQQQQ QPQPQQPPSQPQMYGSPIDYTAAPAAPEMIPTVPTPAPLPVPSPAPLAAAANPSPAAN PGGPQPKLQSNMFKMQRNRTLKNSYVDVFNPSGAPMSAAPENVLAPIMAPAAVPQGGF FVPGQQ" misc_feature <811..1545 /gene="Sec16" /note="large tegument protein UL36; Provisional; Region: PHA03247" /db_xref="CDD:223021" misc_feature <814..>1107 /gene="Sec16" /note="Kinetoplastid RNA Editing Protein A (KREPA); Region: KREPA; cl49620" /db_xref="CDD:483960" misc_feature 3712..4941 /gene="Sec16" /note="Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16; Region: ACE1-Sec16-like; cd09233" /db_xref="CDD:187750" misc_feature order(4177..4182,4186..4191,4195..4209,4213..4215, 4219..4221,4249..4251,4255..4257,4261..4266,4270..4275, 4285..4287,4303..4305,4324..4326,4354..4356,4369..4371, 4378..4380,4462..4467) /gene="Sec16" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187750" misc_feature order(4708..4710,4774..4779,4783..4788,4795..4800, 4807..4809,4888..4893,4900..4905,4912..4914,4924..4926) /gene="Sec16" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:187750" polyA_site 7485 /gene="Sec16" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgaaagtcga gttggcattt gggagatttg ctgtgttcgg atcgaaaaaa ttccaaagtt 61 aattgtttaa aagccaagac gactgcttta gcaatcagcc aacaagtaaa tgtattgttt 121 agtcaactgc cagaggacag taccaagtgc gtgtaaataa acgagcgatt tgtatccaac 181 atgttgcaca acaatgcgcc ctggctgcca ccgcatcagc agcagcagca gcagcagcaa 241 caggccccgc agcaacatgc aacgccccaa cagcagcagc agcagcagca acctcatcct 301 gcacagcagc agcatcagca gcatcagcag ctctacgcca gccaaatgtt ccagcaacag 361 cagccaaatt actggccgga ggatcagcag cagcagcagc agtcgctgaa ctacaataac 421 tactttgcag gacagcagca gcaactgcca ctgcagcagc aacagcagca actgccactg 481 cagcaacagc agccacaaca gcctacgcag cagcaacata atatccagca gcaactgtat 541 tatcccactc accagcagcc acaagtcccg gctccagcgg aacccgctct ggactcgttt 601 gacaacaata atagcggcgg aggaggagga ggaggtggct ggggtgattg gggcgattgg 661 aacgacaata gcaacaacaa taatagcctt agcaacgagg ccttgctgga gccatcgggg 721 caactgctcg aggactcctt caatgtccag tcctcgccag gcagttggca agcctttgcc 781 accggcaata gtgtcaataa caatgtggag ctgccgcctc caacggatca gcaggcagca 841 tcattgcctc agcagccgga ggttggtcag gaacccgaac tggatgccat tgtgccgccc 901 caggctttcc aaaaccagcc accaacatca ctttctgcgt ttgctgcacc accatttgct 961 gtggtagctc ctccagcgcc tcttgccggc ggggtagctc ctccagcgcc tcttgccggc 1021 gtggtagcac caccaacgga cgccgctggc attgcaccac cggctgcact gccgcccagc 1081 ttgactccag cggctggcaa tcccttcaag cgctccgcgg gcctcaataa gcgagtgaac 1141 ataatggcca gtccggcggg cggagctcct tcaccaccag caccggctgt agcgccatta 1201 gctcctccag ttgccccgcc tcccggggag gcccatggcg atggcttcaa cttgctggcg 1261 gcaccacctg ttgaggcttc accaggtgcc ccaattcctg cagcaaccgc atcgctgtac 1321 gctcagccag cggtggacaa ccaggaggtg ttgtccgccc ctaatgacga gcgggcgcag 1381 tacctgcaga cgagtcacct gtccgagcag ctgggcgagg gcgaggcgga tcaggatgcg 1441 ggtctgctgc cgccaccggg cttgtcccgt ctggttctgg gccagccgga gctggactcg 1501 cagcagcagc gcctggtcac cggcgccacg gagcagccgg cgctcgatgt cgcccaggcg 1561 gctgccctgc acatgcagga gcgtcaggcg gacggcgagg acacctcgga cgacggcggg 1621 cagcaagtgc gcaatataca gacgccaccg cgtcgcgtcg tcacgggcgt ggagacgaac 1681 gcaccatcgt tgagggagca ggtgctggat ggtgagaatc tggaggatcg cgaagccatt 1741 ccgccaccag cgctggccga acttcccccg acattgtcgg tacatcacaa tattcagccc 1801 gatgagccgg agctgcagct gcatcacatc aaccaaccgc cgcaggcagt caccccgcaa 1861 ccacagcaac cacagcaacc gcagctacct cttctacagc agcagcagcc gcaacagcag 1921 gagaagaagc gggcggcggc ggggggacgt cgcgcgaatg cctcgctgga tctggagtcc 1981 gaggacgagt cggatgagtt cctgcagagc gaaagggagc gcgatcggga gcgcgagcgc 2041 cgggatctga tggacgagcg gcagggccgc ggacgcagcc atggtcacta cacctacgat 2101 ggcgaaacgg aggactcggt acgcggtgct gcccaccacg agaccaaatc gctgagggaa 2161 acgcagcaca ggcggagcaa caatcacgac tcgacgcgat cgcgtcgcca tccagcggaa 2221 ccgaaggccg agcgggaaag ggaaagggag cgggaacggg atagggagcg tgagcggcac 2281 tggcggcgac gctcgaataa gtatcacagt ggcggcgagg atcaggagcg ttcgtacgat 2341 cattcgcgtc gctacaacaa cagcaactac gacggcgaat cggataatcc cgagatcaat 2401 catctcggcg agggagaact cgatggcgga ggcactgagg gaagaggagg tggtggccgg 2461 agcagtaaaa ccggccgcag ccagcgacgc agcgccgccg aggagccgtc gttcgactac 2521 tacgaaccgg aacgcgatcg tgatcacgat cgtcaatact ccagacgctc caacaaacag 2581 ccatcgtcgg ccgacaaatc gcgatcgtcg ggcggacgac ggagctacga gaatcaggga 2641 cgcagtggcc gcccagagga gggtcgccga cgtcaccagg atctgcggaa ctgggacggt 2701 ggctacgagg agtaccgccg gaagagctcg cgcaacagtg atctcgagaa ggagcgcatc 2761 aacggaggca acaccagcgg cggcggcggc ggtggcagcg gaggaggtgg ttccggttcc 2821 ggcaagcgtc gcaatcagta tgatcagtat ggcggtgcct acgattcgta ctccatgtac 2881 gagcagatgt cgcgcaatcc gcatgcctat gccgatatgt acgccaagtt ctacggccag 2941 atgatcaact cgatgacggc ggccgctgtc tcggcggctg cctcgaagtc cggagttcct 3001 ggcggcgcag cagcagcagc agcagcgatt cctggcttgg tgcccggcgc tgttccggtg 3061 agtgccgccc agttggtggc cgccgccgcc gccgcaagcg gaggcagtgt cagcgggagc 3121 agtgaagccg ccctgctgag ggagcgagaa aggtatacac acgcatacat aacccaagcc 3181 aatgaattcc atcgccaaca atacaaagag ctgatctacc agcaacaaca acaacaacaa 3241 caacagcaac atcacaggga ggatccgcta aactcgagtt ttaacattac ggaggataat 3301 gccagttttt acggatcacg aggaggatcc atctataacc aataccatcc atatccttcg 3361 ctctccagtg cccgctcgtt gagcaattta aacggcgatg gacgcaattc ccgatgcgga 3421 ccgtattacg ctggttccga gtgcggtctc gatatcagag ctgctgccga agcggcacca 3481 tcgacctacg gtggattggc caccgctgga acggtgacca ccaccgcggt ggctcgtccg 3541 ccgcgccgac gcacgcccct gcagttcaac cggccccatt tggtggcctc gtacgcgatg 3601 agtctgctgc tgaaggtgaa gcccaagtac gccggccgcg ggcgtttgcg caacgatgtg 3661 gaggtggcgc cgccgcgcat ccgcgacgga acgagcagcc tgctgcgcat gtatccgggt 3721 cccctgcagg gccgcaagct gcacaaggac aagatcatca gcttctgcaa ggaacagatc 3781 cgactgggac ccaccaaggg ctgcaccgtg ctctatgcca cccagaagag tccgcagggc 3841 agcgtggtca agtaccgtgc ctcgcatgcg ctcatgtggc acctgctcat actgctgctg 3901 cgccaaaatg ggtacattgc cgacactgat gtgggcgatc tgttgctgga gaaccagcag 3961 gagtatccct acgagcccag cgagtacgag gcggagaacg agccggatgt tgaggctgaa 4021 caggaggccg cagctcccgg ggagaagtca gtggaatcgg atttagacag cgaatcggca 4081 gcgggagcag ctgcagccac gccagaggaa acaccagccg gtggcgcaac caatggaggc 4141 gatgcgggag ctccacaatc gcctctgtcg gaacaggcgg ccacggacaa gttccgcagc 4201 tatgtgctgc gcggcaacgt cgaggaggcc ctccagtggg ccaccgacaa tggcctgtgg 4261 acgcacgcct ttttcctggc cctctacgag gatcgctacg ccctgacgga tgtcgcccag 4321 aagttcctca atcgcgcgat caaggccaac gatccgctgc agacgctcta ccagatgaag 4381 agctgccaga cgccggcgtg cgtcagccag ctgagggacg agcagtgggg cgactggcgg 4441 tcgcatctct ccattctggt gacgaacaag agccgccagc cgaagtacga tcgcagctcg 4501 gtggtggcgc tcggcgacac gctcttccag cggggcgaca tctatgcggc gcacttttgc 4561 tatctggtgg cccaggagga gttcggccgc tacgatagct cggccacaga gctaaccaca 4621 ttgaccgcca atgtgcccag actcatcctg ctgggctcct cgcactacaa gcacttcaat 4681 gagttcgcca gcaacgaggc catcatcatg acggagatct acgagtatgc tcgctcgctg 4741 ttcgatccca agttcagcat tgcccacttc cagcactaca agttcctgct ggccaccagg 4801 atcctcgact atggccagca cttccgctgc accaattact tggagcaaat cgccaggcac 4861 atcgagctga agccggagag ttacgacatt gattttatac agagggtctg cggtttggcc 4921 gaacgcctgc gctaccatga tcccatcctg atcaatcgcg tctcttttgc gagtccccca 4981 aatgccgcca gcaaggatag cgctgcgccc gaggagaagg cctggctgcg tcagctgcgc 5041 tccctggccg atgtgcccca gcaggagcaa ttgcaattgc atcatcaagt gcagcagcag 5101 cagcaggagc agaacgacat cgatcagcag tttgccgagg tgaacaagca gttcagagag 5161 ctgaacatgc agtacgatgg tggcaatctg gagagcacgc tgcaaacgca attgcctcca 5221 gtggagcagc agcagcagcc agctcagtca gaggtgcctc cgccgcaaca acaatactat 5281 gaaccgccac cagcagcagc agcagcagca gcccaagtgc cagcagaatc ggatccctat 5341 ggacagcagc agggatccta ctacgatccc aatgcaggaa tgcagcatca atacgatccc 5401 aatgctggga tacagcacca atacgatccg aataccgagg cccaccatca gtacgaacat 5461 ggccaaatag agcctgcaag tgaggcctac caaccagcag cagatccttc agctgctccc 5521 gctggctatg gctatgatta ctggtcgggc acccagcagc caccgtatgg cgatgagcct 5581 gcgttaaagg atgaggcgga ggaggaggag gatgagcagc agatattgca gcaggcacag 5641 cagcagcagc aattgcgcgt ggccaagcag caacaggagc aacatactcg caccaatggc 5701 gccgccaaca gcaacaacaa tcgcttcaag tcgaatgctt tgaagcagga aaaaggcagc 5761 agcatcactg cattgcgaaa aaggcaggag gcttcgagaa cagcaactat agcggcggca 5821 gcagcagcaa ttgcccaaat aacaccagct aaagttgcaa cagcagcagc agcagcaacg 5881 acgacggcag caacatcggc aaaggcattc aatttgaatg atctgcagca acagcaggct 5941 cgcccggcga tctccatgcc caagtcgaag agctatggcg acgaggacga tggcggtgcg 6001 gctcatcctg gccagaaacc aaccccggag gcagccggca aacagcaggc atcgggcaag 6061 cagtccaatt ccggcggtga tcttggggca cctggcaatc agaatgccgg ctggtttggc 6121 ggactctgga acaagctgtc gctgaagccg aagaaccaaa tgatcctgcc ggacgacaag 6181 aatccgacca tcgtttggga caaggagcgc aagtgctgga caaacaccga gggcggcacc 6241 gacgagacgg aaagcttcaa gccgccgccc aagatgagcg atctgggcat gggcatgccg 6301 ccggccatgg gaatgggaat gggaatgggc gtgggcatgg gtgcagcaac caatccgctg 6361 ggcagccacc aaccagcacc gttgatggat cagcagcagc agcagccgca gccgcagcaa 6421 ccaccgtctc agccgcaaat gtatggcagt cccattgatt acacggctgc tccggctgca 6481 cccgagatga tacccacggt cccaacgccg gcgccacttc ctgtcccatc acctgcaccg 6541 ctggcagcgg cggccaatcc cagtcccgcg gccaatcccg gaggtcccca gcccaagttg 6601 cagtcgaaca tgtttaagat gcaacgcaac cgcacgctga agaactccta cgtggatgtg 6661 ttcaatccct cgggggcgcc catgtcggcg gccccggaga atgtgctcgc ccccataatg 6721 gcgccggctg cggtgcccca aggcggtttc tttgtccccg gacagcaata ggggattaac 6781 ggaagcagga gcaggagcct cgcgatctgg agcaccagca gcaggtgtgt gtgcatggat 6841 ggaggatgga ggatgaagga tggaggagga ggatgtgaga gggctgccac aaatgccaac 6901 gagatcactt cgaaactacg taaaaaaata aaaagaaaaa actttttcaa ccggcgaacg 6961 ctcacacaca cacacactgt catgcataaa atatacacac acacacacat ccatacgaga 7021 aaagacaact ttccagcagg ggaaaagttg atcctacgat ttcttcaagc tcctacagtt 7081 tgttaatctt ctgtctgtct gtcctatctt gttgtgtgtg tcgctctact aaattaactc 7141 acccaactaa aaattaaaca cctaatttca ccgatttgtg cgcatgtgag gagtaagtgt 7201 gtgtgtgtca ggtgcgtgtg tgtgtgcgat cgatgtccta aagtttagcg aatgattaat 7261 tgaggaaacg atgaagaaag cgatttatgt acgactagcg aattatatat gtaaattttc 7321 tctatgtaaa ctatacgtcc cccgatcccc gagaatccct ctatatcctc cacgaacccc 7381 cgctgccgcc ttcttccccg atttctgttt atatacatgt ttcttttgta tgttgcatag 7441 tttttatgat tattttttgt ttagctgtat gaatatgtat tcgaa