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LOCUS XM_070218758 6837 bp mRNA linear INV 09-DEC-2024 variant X11, mRNA. ACCESSION XM_070218758 VERSION XM_070218758.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6837 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6837 /gene="Sec16" /note="Secretory 16; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108062963" CDS 181..6123 /gene="Sec16" /codon_start=1 /product="protein transport protein Sec16A isoform X8" /protein_id="XP_070074859.1" /db_xref="GeneID:108062963" /translation="MLHNNAPWLPPHQQQQQQQQQAPQQHATPQQQQQQQQPHPAQQQ HQQHQQLYASQMFQQQQPNYWPEDQQQQQQSLNYNNYFAGQQQQLPLQQQQQQLPLQQ QQPQQPTQQQHNIQQQLYYPTHQQPQVPAPAEPALDSFDNNNSGGGGGGGGWGDWGDW NDNSNNNNSLSNEALLEPSGQLLEDSFNVQSSPGSWQAFATGNSVNNNVELPPPTDQQ AASLPQQPEVGQEPELDAIVPPQAFQNQPPTSLSAFAAPPFAVVAPPAPLAGGVAPPA PLAGVVAPPTDAAGIAPPAALPPSLTPAAGNPFKRSAGLNKRVNIMASPAGGAPSPPA PAVAPLAPPVAPPPGEAHGDGFNLLAAPPVEASPGAPIPAATASLYAQPAVDNQEVLS APNDERAQYLQTSHLSEQLGEGEADQDAGLLPPPGLSRLVLGQPELDSQQQRLVTGAT EQPALDVAQAAALHMQERQADGEDTSDDGGQQVRNIQTPPRRVVTGVETNAPSLREQV LDGENLEDREAIPPPALAELPPTLSVHHNIQPDEPELQLHHINQPPQAVTPQPQQPQQ PQLPLLQQQQPQQQEKKRAAAGGRRANASLDLESEDESDEFLQSERERDRERERRDLM DERQGRGRSHGHYTYDGETEDSVRGAAHHETKSLRETQHRRSNNHDSTRSRRHPAEPK AERERERERERDRERERHWRRRSNKYHSGGEDQERSYDHSRRYNNSNYDGESDNPEIN HLGEGELDGGGTEGRGGGGRSSKTGRSQRRSAAEEPSFDYYEPERDRDHDRQYSRRSN KQPSSADKSRSSGGRRSYENQGRSGRPEEGRRRHQDLRNWDGGYEEYRRKSSRNSDLE KERINGGNTSGGGGGGSGGGGSGSGKRRNQYDQYGGAYDSYSMYEQMSRNPHAYADMY AKFYGQMINSMTAAAVSAAASKSGVPGGAAAAAAAIPGLVPGAVPVSAAQLVAAAAAA SGGSVSGSSEAALLRERERAAAEAAPSTYGGLATAGTVTTTAVARPPRRRTPLQFNRP HLVASYAMSLLLKVKPKYAGRGRLRNDVEVAPPRIRDGTSSLLRMYPGPLQGRKLHKD KIISFCKEQIRLGPTKGCTVLYATQKSPQGSVVKYRASHALMWHLLILLLRQNGYIAD TDVGDLLLENQQEYPYEPSEYEAENEPDVEAEQEAAAPGEKSVESDLDSESAAGAAAA TPEETPAGGATNGGDAGAPQSPLSEQAATDKFRSYVLRGNVEEALQWATDNGLWTHAF FLALYEDRYALTDVAQKFLNRAIKANDPLQTLYQMKSCQTPACVSQLRDEQWGDWRSH LSILVTNKSRQPKYDRSSVVALGDTLFQRGDIYAAHFCYLVAQEEFGRYDSSATELTT LTANVPRLILLGSSHYKHFNEFASNEAIIMTEIYEYARSLFDPKFSIAHFQHYKFLLA TRILDYGQHFRCTNYLEQIARHIELKPESYDIDFIQRVCGLAERLRYHDPILINRVSF ASPPNAASKDSAAPEEKAWLRQLRSLADVQPQQEQLQLHHQVQQQQQEQNDIDQQFAE VNKQFRELNMQYDGGNLESTLQTQLPPVEQQQQPAQSEVPPPQQQYYEPPPAAAAAAA QVPAESDPYGQQQGSYYDPNAGMQHQYDPNAGIQHQYDPNTEAHHQYEHGQIEPASEA YQPAADPSAAPAGYGYDYWSGTQQPPYGDELQQQQARPAISMPKSKSYGDEDDGGAAH PGQKPTPEAAGKQQASGKQSNSGGDLGAPGNQNAGWFGGLWNKLSLKPKNQMILPDDK NPTIVWDKERKCWTNTEGGTDETESFKPPPKMSDLGMGMPPAMGMGMGMGVGMGAATN PLGSHQPAPLMDQQQQQPQPQQPPSQPQMYGSPIDYTAAPAAPEMIPTVPTPAPLPVP SPAPLAAAANPSPAANPGGPQPKLQSNMFKMQRNRTLKNSYVDVFNPSGAPMSAAPEN VLAPIMAPAAVPQGGFFVPGQQ" misc_feature <811..1545 /gene="Sec16" /note="large tegument protein UL36; Provisional; Region: PHA03247" /db_xref="CDD:223021" misc_feature <814..>1107 /gene="Sec16" /note="Kinetoplastid RNA Editing Protein A (KREPA); Region: KREPA; cl49620" /db_xref="CDD:483960" misc_feature 3406..4635 /gene="Sec16" /note="Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16; Region: ACE1-Sec16-like; cd09233" /db_xref="CDD:187750" misc_feature order(3871..3876,3880..3885,3889..3903,3907..3909, 3913..3915,3943..3945,3949..3951,3955..3960,3964..3969, 3979..3981,3997..3999,4018..4020,4048..4050,4063..4065, 4072..4074,4156..4161) /gene="Sec16" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187750" misc_feature order(4402..4404,4468..4473,4477..4482,4489..4494, 4501..4503,4582..4587,4594..4599,4606..4608,4618..4620) /gene="Sec16" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:187750" polyA_site 6837 /gene="Sec16" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgaaagtcga gttggcattt gggagatttg ctgtgttcgg atcgaaaaaa ttccaaagtt 61 aattgtttaa aagccaagac gactgcttta gcaatcagcc aacaagtaaa tgtattgttt 121 agtcaactgc cagaggacag taccaagtgc gtgtaaataa acgagcgatt tgtatccaac 181 atgttgcaca acaatgcgcc ctggctgcca ccgcatcagc agcagcagca gcagcagcaa 241 caggccccgc agcaacatgc aacgccccaa cagcagcagc agcagcagca acctcatcct 301 gcacagcagc agcatcagca gcatcagcag ctctacgcca gccaaatgtt ccagcaacag 361 cagccaaatt actggccgga ggatcagcag cagcagcagc agtcgctgaa ctacaataac 421 tactttgcag gacagcagca gcaactgcca ctgcagcagc aacagcagca actgccactg 481 cagcaacagc agccacaaca gcctacgcag cagcaacata atatccagca gcaactgtat 541 tatcccactc accagcagcc acaagtcccg gctccagcgg aacccgctct ggactcgttt 601 gacaacaata atagcggcgg aggaggagga ggaggtggct ggggtgattg gggcgattgg 661 aacgacaata gcaacaacaa taatagcctt agcaacgagg ccttgctgga gccatcgggg 721 caactgctcg aggactcctt caatgtccag tcctcgccag gcagttggca agcctttgcc 781 accggcaata gtgtcaataa caatgtggag ctgccgcctc caacggatca gcaggcagca 841 tcattgcctc agcagccgga ggttggtcag gaacccgaac tggatgccat tgtgccgccc 901 caggctttcc aaaaccagcc accaacatca ctttctgcgt ttgctgcacc accatttgct 961 gtggtagctc ctccagcgcc tcttgccggc ggggtagctc ctccagcgcc tcttgccggc 1021 gtggtagcac caccaacgga cgccgctggc attgcaccac cggctgcact gccgcccagc 1081 ttgactccag cggctggcaa tcccttcaag cgctccgcgg gcctcaataa gcgagtgaac 1141 ataatggcca gtccggcggg cggagctcct tcaccaccag caccggctgt agcgccatta 1201 gctcctccag ttgccccgcc tcccggggag gcccatggcg atggcttcaa cttgctggcg 1261 gcaccacctg ttgaggcttc accaggtgcc ccaattcctg cagcaaccgc atcgctgtac 1321 gctcagccag cggtggacaa ccaggaggtg ttgtccgccc ctaatgacga gcgggcgcag 1381 tacctgcaga cgagtcacct gtccgagcag ctgggcgagg gcgaggcgga tcaggatgcg 1441 ggtctgctgc cgccaccggg cttgtcccgt ctggttctgg gccagccgga gctggactcg 1501 cagcagcagc gcctggtcac cggcgccacg gagcagccgg cgctcgatgt cgcccaggcg 1561 gctgccctgc acatgcagga gcgtcaggcg gacggcgagg acacctcgga cgacggcggg 1621 cagcaagtgc gcaatataca gacgccaccg cgtcgcgtcg tcacgggcgt ggagacgaac 1681 gcaccatcgt tgagggagca ggtgctggat ggtgagaatc tggaggatcg cgaagccatt 1741 ccgccaccag cgctggccga acttcccccg acattgtcgg tacatcacaa tattcagccc 1801 gatgagccgg agctgcagct gcatcacatc aaccaaccgc cgcaggcagt caccccgcaa 1861 ccacagcaac cacagcaacc gcagctacct cttctacagc agcagcagcc gcaacagcag 1921 gagaagaagc gggcggcggc ggggggacgt cgcgcgaatg cctcgctgga tctggagtcc 1981 gaggacgagt cggatgagtt cctgcagagc gaaagggagc gcgatcggga gcgcgagcgc 2041 cgggatctga tggacgagcg gcagggccgc ggacgcagcc atggtcacta cacctacgat 2101 ggcgaaacgg aggactcggt acgcggtgct gcccaccacg agaccaaatc gctgagggaa 2161 acgcagcaca ggcggagcaa caatcacgac tcgacgcgat cgcgtcgcca tccagcggaa 2221 ccgaaggccg agcgggaaag ggaaagggag cgggaacggg atagggagcg tgagcggcac 2281 tggcggcgac gctcgaataa gtatcacagt ggcggcgagg atcaggagcg ttcgtacgat 2341 cattcgcgtc gctacaacaa cagcaactac gacggcgaat cggataatcc cgagatcaat 2401 catctcggcg agggagaact cgatggcgga ggcactgagg gaagaggagg tggtggccgg 2461 agcagtaaaa ccggccgcag ccagcgacgc agcgccgccg aggagccgtc gttcgactac 2521 tacgaaccgg aacgcgatcg tgatcacgat cgtcaatact ccagacgctc caacaaacag 2581 ccatcgtcgg ccgacaaatc gcgatcgtcg ggcggacgac ggagctacga gaatcaggga 2641 cgcagtggcc gcccagagga gggtcgccga cgtcaccagg atctgcggaa ctgggacggt 2701 ggctacgagg agtaccgccg gaagagctcg cgcaacagtg atctcgagaa ggagcgcatc 2761 aacggaggca acaccagcgg cggcggcggc ggtggcagcg gaggaggtgg ttccggttcc 2821 ggcaagcgtc gcaatcagta tgatcagtat ggcggtgcct acgattcgta ctccatgtac 2881 gagcagatgt cgcgcaatcc gcatgcctat gccgatatgt acgccaagtt ctacggccag 2941 atgatcaact cgatgacggc ggccgctgtc tcggcggctg cctcgaagtc cggagttcct 3001 ggcggcgcag cagcagcagc agcagcgatt cctggcttgg tgcccggcgc tgttccggtg 3061 agtgccgccc agttggtggc cgccgccgcc gccgcaagcg gaggcagtgt cagcgggagc 3121 agtgaagccg ccctgctgag ggagcgagaa agagctgctg ccgaagcggc accatcgacc 3181 tacggtggat tggccaccgc tggaacggtg accaccaccg cggtggctcg tccgccgcgc 3241 cgacgcacgc ccctgcagtt caaccggccc catttggtgg cctcgtacgc gatgagtctg 3301 ctgctgaagg tgaagcccaa gtacgccggc cgcgggcgtt tgcgcaacga tgtggaggtg 3361 gcgccgccgc gcatccgcga cggaacgagc agcctgctgc gcatgtatcc gggtcccctg 3421 cagggccgca agctgcacaa ggacaagatc atcagcttct gcaaggaaca gatccgactg 3481 ggacccacca agggctgcac cgtgctctat gccacccaga agagtccgca gggcagcgtg 3541 gtcaagtacc gtgcctcgca tgcgctcatg tggcacctgc tcatactgct gctgcgccaa 3601 aatgggtaca ttgccgacac tgatgtgggc gatctgttgc tggagaacca gcaggagtat 3661 ccctacgagc ccagcgagta cgaggcggag aacgagccgg atgttgaggc tgaacaggag 3721 gccgcagctc ccggggagaa gtcagtggaa tcggatttag acagcgaatc ggcagcggga 3781 gcagctgcag ccacgccaga ggaaacacca gccggtggcg caaccaatgg aggcgatgcg 3841 ggagctccac aatcgcctct gtcggaacag gcggccacgg acaagttccg cagctatgtg 3901 ctgcgcggca acgtcgagga ggccctccag tgggccaccg acaatggcct gtggacgcac 3961 gcctttttcc tggccctcta cgaggatcgc tacgccctga cggatgtcgc ccagaagttc 4021 ctcaatcgcg cgatcaaggc caacgatccg ctgcagacgc tctaccagat gaagagctgc 4081 cagacgccgg cgtgcgtcag ccagctgagg gacgagcagt ggggcgactg gcggtcgcat 4141 ctctccattc tggtgacgaa caagagccgc cagccgaagt acgatcgcag ctcggtggtg 4201 gcgctcggcg acacgctctt ccagcggggc gacatctatg cggcgcactt ttgctatctg 4261 gtggcccagg aggagttcgg ccgctacgat agctcggcca cagagctaac cacattgacc 4321 gccaatgtgc ccagactcat cctgctgggc tcctcgcact acaagcactt caatgagttc 4381 gccagcaacg aggccatcat catgacggag atctacgagt atgctcgctc gctgttcgat 4441 cccaagttca gcattgccca cttccagcac tacaagttcc tgctggccac caggatcctc 4501 gactatggcc agcacttccg ctgcaccaat tacttggagc aaatcgccag gcacatcgag 4561 ctgaagccgg agagttacga cattgatttt atacagaggg tctgcggttt ggccgaacgc 4621 ctgcgctacc atgatcccat cctgatcaat cgcgtctctt ttgcgagtcc cccaaatgcc 4681 gccagcaagg atagcgctgc gcccgaggag aaggcctggc tgcgtcagct gcgctccctg 4741 gccgatgtgc agccccagca ggagcaattg caattgcatc atcaagtgca gcagcagcag 4801 caggagcaga acgacatcga tcagcagttt gccgaggtga acaagcagtt cagagagctg 4861 aacatgcagt acgatggtgg caatctggag agcacgctgc aaacgcaatt gcctccagtg 4921 gagcagcagc agcagccagc tcagtcagag gtgcctccgc cgcaacaaca atactatgaa 4981 ccgccaccag cagcagcagc agcagcagcc caagtgccag cagaatcgga tccctatgga 5041 cagcagcagg gatcctacta cgatcccaat gcaggaatgc agcatcaata cgatcccaat 5101 gctgggatac agcaccaata cgatccgaat accgaggccc accatcagta cgaacatggc 5161 caaatagagc ctgcaagtga ggcctaccaa ccagcagcag atccttcagc tgctcccgct 5221 ggctatggct atgattactg gtcgggcacc cagcagccac cgtatggcga tgagctgcag 5281 caacagcagg ctcgcccggc gatctccatg cccaagtcga agagctatgg cgacgaggac 5341 gatggcggtg cggctcatcc tggccagaaa ccaaccccgg aggcagccgg caaacagcag 5401 gcatcgggca agcagtccaa ttccggcggt gatcttgggg cacctggcaa tcagaatgcc 5461 ggctggtttg gcggactctg gaacaagctg tcgctgaagc cgaagaacca aatgatcctg 5521 ccggacgaca agaatccgac catcgtttgg gacaaggagc gcaagtgctg gacaaacacc 5581 gagggcggca ccgacgagac ggaaagcttc aagccgccgc ccaagatgag cgatctgggc 5641 atgggcatgc cgccggccat gggaatggga atgggaatgg gcgtgggcat gggtgcagca 5701 accaatccgc tgggcagcca ccaaccagca ccgttgatgg atcagcagca gcagcagccg 5761 cagccgcagc aaccaccgtc tcagccgcaa atgtatggca gtcccattga ttacacggct 5821 gctccggctg cacccgagat gatacccacg gtcccaacgc cggcgccact tcctgtccca 5881 tcacctgcac cgctggcagc ggcggccaat cccagtcccg cggccaatcc cggaggtccc 5941 cagcccaagt tgcagtcgaa catgtttaag atgcaacgca accgcacgct gaagaactcc 6001 tacgtggatg tgttcaatcc ctcgggggcg cccatgtcgg cggccccgga gaatgtgctc 6061 gcccccataa tggcgccggc tgcggtgccc caaggcggtt tctttgtccc cggacagcaa 6121 taggggatta acggaagcag gagcaggagc ctcgcgatct ggagcaccag cagcaggtgt 6181 gtgtgcatgg atggaggatg gaggatgaag gatggaggag gaggatgtga gagggctgcc 6241 acaaatgcca acgagatcac ttcgaaacta cgtaaaaaaa taaaaagaaa aaactttttc 6301 aaccggcgaa cgctcacaca cacacacact gtcatgcata aaatatacac acacacacac 6361 atccatacga gaaaagacaa ctttccagca ggggaaaagt tgatcctacg atttcttcaa 6421 gctcctacag tttgttaatc ttctgtctgt ctgtcctatc ttgttgtgtg tgtcgctcta 6481 ctaaattaac tcacccaact aaaaattaaa cacctaattt caccgatttg tgcgcatgtg 6541 aggagtaagt gtgtgtgtgt caggtgcgtg tgtgtgtgcg atcgatgtcc taaagtttag 6601 cgaatgatta attgaggaaa cgatgaagaa agcgatttat gtacgactag cgaattatat 6661 atgtaaattt tctctatgta aactatacgt cccccgatcc ccgagaatcc ctctatatcc 6721 tccacgaacc cccgctgccg ccttcttccc cgatttctgt ttatatacat gtttcttttg 6781 tatgttgcat agtttttatg attatttttt gtttagctgt atgaatatgt attcgaa