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LOCUS XM_070218747 1649 bp mRNA linear INV 09-DEC-2024 (LOC108054575), mRNA. ACCESSION XM_070218747 VERSION XM_070218747.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq; corrected model. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-42 JARPSC010000001.1 16977991-16978032 c 43-1649 JARPSC010000001.1 16976383-16977989 c FEATURES Location/Qualifiers source 1..1649 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1649 /gene="LOC108054575" /note="uncharacterized LOC108054575; The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108054575" CDS 1..1608 /gene="LOC108054575" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon" /codon_start=1 /product="LOW QUALITY PROTEIN: uncharacterized protein" /protein_id="XP_070074848.1" /db_xref="GeneID:108054575" /translation="MVSLGSRGNHLNTSSPHPSHPLIPIYLLRLQKFYVFALAFVGLV AADVSHLKLGLSADGGYGLSASSSASSSSSSSSEVVPGGDASSYQPAEYTPEHLKAAE VVPGGDASSYQPAEYTPAHLKAAEVVPGGDSSSYQPAEYTPEHLKSAEVIPGGDSSSY QPAEYTPAYLKQSSSGTFSAEDAPGADSSSYQPAEYTPEHLKAAEVVPGGDASSYQPA EYTPAHLKAAEVVPGGDSSSYQPAEYTPEHLKAAEVVPGGDDSSYQPAEYTSAHLKTA EIIPGGDSSSYQPAEYTPAYLKQSSSGAVAAEVVPGGDASSYQPAEYTPTHLKAAEVV PGGDSSSYQPAEYTPAYLKQSSSAAVAAEVVPGGDSSSYQLAEYTPVHLKASVPAAIG ANTYAPVPAAIGADSYTPEKFIPQADREAHYKYVQEQQQQQQETVVPGGDSSSYQPAE YQSVVVQGHQPANLIAAYVQGQAPTVIGANTITPAHLYEEPASNGIEEFNPETHVPVA IGADTITPAHLLGGQDTQYASNGGYVY" misc_feature <271..>966 /gene="LOC108054575" /note="type IVB secretion system protein DotG/IcmE; Region: T4SS_IcmE_DotG; NF033900" /db_xref="CDD:468233" ORIGIN 1 atggtaagtt taggttctag ggggaaccac ctgaatactt cctcaccgca cccatctcac 61 cctctaatcc ctatctactt gctccgcctg cagaagttct acgtctttgc tttggccttt 121 gtcggcctcg tcgccgctga cgtcagtcac ctcaagttgg gcctgtccgc cgatggaggc 181 tatggactct ccgcctcttc gtccgcatcc tcctcttcat cttcttcctc ggaagtagtg 241 ccaggtggtg atgctagctc ctaccaaccc gctgaataca ctcccgagca cttgaaggct 301 gctgaggttg ttcctggagg cgacgctagt tcctaccaac ccgctgaata cactcccgcc 361 catctcaagg ctgcagaggt cgtccctgga ggtgattcca gctcctacca gcctgctgaa 421 tacactcccg agcacttgaa atcggctgag gtcatcccag gaggtgattc tagctcctat 481 caacccgctg aatacactcc tgcctatctg aagcagtcct cttctggcac tttttctgct 541 gaggatgctc ctggtgcaga ctcaagctct taccaacccg ctgaatacac tcccgagcac 601 ttgaaggctg ctgaggttgt tcctggtggc gacgctagct cctatcagcc cgctgaatat 661 actcccgccc acctcaaggc cgctgaggtc gtccctggag gagattctag ttcctaccaa 721 cccgctgaat acactcccga gcacttgaag gctgctgagg ttgttcctgg tggcgacgat 781 agttcctacc aacccgctga atacacttcc gcccatctca agactgctga aatcatccct 841 ggaggtgatt ctagttccta ccaacccgct gaatacactc ctgcctatct gaagcagtcc 901 tcttctggcg ctgttgctgc tgaggttgtt cctggtggcg acgctagctc ctatcagccc 961 gctgaataca ctcccaccca tctcaaggcc gctgaggtcg tccctggagg tgattctagt 1021 tcctaccaac ccgctgaata cactcctgct tatctcaagc agtcctcttc tgccgctgtt 1081 gctgctgaag tggtacctgg tggagattcg agctcctatc aacttgctga atacactccc 1141 gttcatctta aggcctctgt tccagctgcg attggagcca atacttatgc accagttcct 1201 gctgctattg gcgctgatag ctacaccccc gagaagttta ttccccaggc cgatcgagag 1261 gcgcactaca agtacgtcca ggagcagcag cagcagcagc aggagacagt tgttcccgga 1321 ggagattcaa gctcttatca gcccgctgaa taccagtccg ttgttgtcca aggccaccag 1381 cccgccaatt tgatcgccgc ctacgtccag ggacaggcgc ccaccgtcat tggagccaac 1441 actatcactc ctgcccatct ctacgaggag cccgcctcta atggcatcga ggagttcaat 1501 cccgagaccc atgtgcccgt ggccattggt gcggacacca tcacgcctgc ccatttactg 1561 ggaggtcagg atacccagta cgcctctaac ggaggttatg tctactaagc ttagttatta 1621 agagccccag aatctattta ctataaata