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LOCUS XM_070218720 1887 bp mRNA linear INV 09-DEC-2024 (schlank), transcript variant X2, mRNA. ACCESSION XM_070218720 VERSION XM_070218720.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1887 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1887 /gene="schlank" /note="ceramide synthase schlank; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108070328" CDS 272..1513 /gene="schlank" /codon_start=1 /product="ceramide synthase 6" /protein_id="XP_070074821.1" /db_xref="GeneID:108070328" /translation="MDLINKFSDAFWSTQIWLPPNTTWADIAPGSRQDVVHANYKDLI WPIPFAAVVMLVRYTLERFWISPIGKSLGIRSSRPKKAANVPILETAYAKSTRLDNKW LAPLSKQTDMSERQIERWWRLRRAQDKPSTLVKFCENTWRCIYYLYSFIFGVIVLWDK PWFWDVKSCWYGYPHQSISNDIWWYYMISMSFYWSLTGTQFFDVKRKDFWQMFIHHMV TLLLMSLSWVCNLHRVGSLVLVVHDCADIFLEAAKLTKYANYQKLCDAIFAIFTVVWI VTRLGFYPRIIYSSSVEAPRILPMFPAYYIFNSLLLMLLVLHVIWTYMILKIVVDSLQ KGLMSGDIRSSDSEDLTDSSENARLANGSARSKNKSNSGATSGGSAAGAGAGGATQRK SNNANNHTTEAAGGAATTAAK" misc_feature 494..664 /gene="schlank" /note="Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner; Region: homeodomain; cd00086" /db_xref="CDD:238039" misc_feature order(494..505,509..511,560..562,578..580,617..619, 623..628,635..640,644..652,656..661) /gene="schlank" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(497..499,506..508,626..628,635..640,647..649) /gene="schlank" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 674..1273 /gene="schlank" /note="TRAM, LAG1 and CLN8 homology domains; Region: TLC; smart00724" /db_xref="CDD:214789" polyA_site 1887 /gene="schlank" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctaactccgc cggctctggg cacactcgca tattaaaaaa attagtattt ttttttcgtt 61 catcctgaaa gtgctagtgg acgcccactc gatccccatt cccgaaattc tgaagtgtat 121 tttggcccgg ccccaggaac ggaacggaac ggtttctcca acaacaaacg ccagggaaaa 181 actggaaagg aaaggaaagc cgagcgaaaa caattgagaa attaaggcag cagcaggaaa 241 aggcaaagga aacggaaaag gaaccggaaa gatggatcta atcaataagt tcagcgatgc 301 attctggagt acgcaaattt ggctgccgcc gaacacgacc tgggcggaca tagcgcccgg 361 ttcgcggcag gatgtggtgc acgccaacta caaggacctc atctggccca ttccattcgc 421 cgctgtcgtc atgctggtcc gctacacgct ggagcgtttt tggatatcgc caataggcaa 481 atccctgggc atacgtagtt ctagacccaa gaaagcggca aatgttccta ttctggagac 541 ggcctatgcc aaatcgacgc gattggacaa caaatggctg gctccgctgt ccaagcagac 601 ggacatgagc gagcgccaaa tcgagcgctg gtggcgcctc cgaagggccc aggacaaacc 661 gtcgacgctg gtcaagttct gtgagaacac ctggcgctgc atctactacc tgtacagctt 721 catctttggc gtgattgtgc tgtgggacaa gccctggttc tgggatgtga agagctgctg 781 gtacggctac ccgcatcagt caatcagcaa cgacatctgg tggtactaca tgatttcgat 841 gtccttctac tggtccctca ccggcaccca gttcttcgat gtgaaacgca aggacttctg 901 gcagatgttc atccatcaca tggtcaccct gctgctgatg tcgctcagct gggtctgcaa 961 tctgcatcgc gtcggctcgt tggtcctcgt tgtccacgat tgtgccgaca tcttcctgga 1021 ggccgccaag ctgaccaagt atgccaacta ccagaagctc tgcgacgcca tctttgccat 1081 cttcacggtg gtctggattg tgacgcgcct gggcttctat ccacgcatca tctacagctc 1141 atctgtggag gccccgcgca ttctgcccat gttcccagcc tactacatct tcaactcatt 1201 gcttctgatg ctgctcgtcc tgcacgtcat ctggacatat atgattctca agatcgttgt 1261 cgactctctg cagaagggtc tgatgtccgg tgacatacgt tccagtgata gtgaggatct 1321 cacagacagt tcggagaatg cacgtctggc caatggctcg gcgcgctcca agaacaagtc 1381 gaacagcggt gcgacgtcgg gaggatctgc agcaggagca ggagcaggtg gtgccaccca 1441 gcgcaagtcc aacaatgcca acaaccacac gaccgaggcg gcaggaggag ctgcgacaac 1501 ggcggccaag taggctggga tgcgggtgac tgggaacgga ggatggagga tggaggagga 1561 gcagccggtg gccaccagtg gctgagcaca gcaccagtac cacagtacca tcaccagtgg 1621 tagtgggcac attttccgag gggcaggagc aacaacaaca gcaaaacaaa caaaatcaac 1681 acacacacac acaccccaca ccaacaccaa cccaaacaca cacacaccca cacacacata 1741 aaaaaaacca aaccagttca gaacgttttt atgttaatta ttatttttta tatataaatc 1801 atttttttta agataaacaa aaaaagagca aaacgaaaac caaaagaaat ttcaataaat 1861 gcgagaaaat ttatgcgtaa cgatcca