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LOCUS XM_070218718 1638 bp mRNA linear INV 09-DEC-2024 (caz), transcript variant X2, mRNA. ACCESSION XM_070218718 VERSION XM_070218718.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1638 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1638 /gene="caz" /note="FUS RNA binding protein cabeza; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108058413" CDS 186..1349 /gene="caz" /codon_start=1 /product="RNA-binding protein cabeza isoform X2" /protein_id="XP_070074819.1" /db_xref="GeneID:108058413" /translation="MVVVPDSRDIIISLSPHQTTNKCQIKRVTTTSHLRTTANKAAVV MIPVIVVLVAAAAAVEVAAAEALGTTEEAIPTGPGGYSGGGGGGGGGGSSGGDMITQE DTIFVSGMDPSTTEQDIETHFGAIGIIKKDKRTMKPKIWLYKNKETGASKGEATVTYD DTNAAQSAIEWFDGRDFNGNAIKVSLAQRQNNWNKGGGGGGRGGFGGRRGGGGGGGGG GGGGGGRFDRGGGGNGGGGGGGRFDRGGGGGGGAGGGGGNVQPRDGDWKCNSCNNTNF AWRNECNRCKTPKGDDEGSSGGGGGGGGYGGGGGGGYDRGDRGSGGGGYQNRDRGGNS QGGGGGGGYSRFNDNGGGGGGGGRGGGRGGGGGNRRDGGGPMRNDGGMRSRPY" misc_feature 498..746 /gene="caz" /note="RNA recognition motif (RRM) found in Drosophila melanogaster RNA-binding protein cabeza and similar proteins; Region: RRM_SARFH; cd12534" /db_xref="CDD:240978" misc_feature 969..1058 /gene="caz" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 981..1040 /gene="caz" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275375" polyA_site 1638 /gene="caz" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtcgacgcac atccctaatt tattttcaca cgccatttta caataaaatt tgtaacgatc 61 tgacgctatc ctactttcat tcgggacatt ttgtgcgcag cgagtaattg aaactcctgc 121 aattccatcg atcgaaaaga gagactgttc gcagcagcgt ttatttgtca tggagcgtgg 181 cggttatggt ggtggtgccg gacagcaggg atataataat ttcgctgtcc ccccaccaaa 241 ctaccaacaa atgccaaata aaacgggtaa ctacaacgag ccacctccga actacggcaa 301 acaaggcggc ggtggttatg attccggtca tcgtggttct ggtggcagcg gcggcggcgg 361 tggaggtggc ggcggcggag gctcttggaa cgaccgagga ggcaattcct acgggacccg 421 gcggctactc gggcggcggt ggaggaggcg gcggcggcgg ttccagtggc ggcgacatga 481 tcacccagga ggacacaatt tttgtctccg gcatggatcc atccaccacc gagcaggata 541 ttgagactca cttcggagct attggcatca ttaagaagga caagcgtacg atgaagccca 601 agatttggct gtacaagaac aaggaaacgg gcgcctcgaa gggcgaggcc acagtcacct 661 acgacgacac caatgcggcc cagtcggcca tcgaatggtt cgacgggcgg gacttcaacg 721 ggaatgcgat caaggtgtcg ctggcccagc gccagaataa ctggaacaag ggcggcggcg 781 gcggtggtcg cggcggattc gggggtcgac gaggtggtgg aggtggcggc ggaggtggag 841 gcggcggcgg cggtggacgc ttcgatcgag gaggaggcgg caacggagga ggcggcggcg 901 gcggacgctt cgatcgcggc ggtggaggcg gcggaggagc cggcggcggc ggtggcaatg 961 tgcagccacg cgatggcgac tggaagtgca atagctgcaa caacaccaac tttgcctggc 1021 gcaatgagtg caatcgctgc aagacgccca aaggcgacga tgaaggctcc agcggtggcg 1081 gcggtggagg cggtggctac ggaggcggcg gcggaggcgg ctacgaccgt ggcgatcgcg 1141 gatccggcgg tggtggctat cagaaccgtg atcgcggtgg caactcgcaa ggaggcggcg 1201 gcggtggcgg ctactcgaga tttaatgaca acggcggagg cggcggcggc ggaggacgtg 1261 gtggtggccg cggaggcggc ggtggcaacc gtcgcgatgg cggcggaccc atgaggaacg 1321 acggaggcat gcgctccaga ccatactagg cgcataggcg gcggtggcac ctattttttc 1381 acatttacgt attaattgta gcgagtactc ttttaaatgt acttttaaat ttaccagtca 1441 gagctaatta taaataccag cagcaaaaag cacacacatc ttcattttaa ccgacttcac 1501 ggacacggtt accgctcgtt ttgactgact tatattatat tatgtaatct aatttaacaa 1561 ttgtaattgt aacatggtac atacgaataa aatatatata tatatatagc tcatatatat 1621 atatgtatat aaattaaa