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LOCUS XM_070218714 5275 bp mRNA linear INV 09-DEC-2024 homolog (THADA), transcript variant X2, mRNA. ACCESSION XM_070218714 VERSION XM_070218714.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5275 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5275 /gene="THADA" /note="Thyroid adenoma-associated protein homolog; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108070210" CDS 237..5012 /gene="THADA" /codon_start=1 /product="tRNA (32-2'-O)-methyltransferase regulator THADA isoform X2" /protein_id="XP_070074815.1" /db_xref="GeneID:108070210" /translation="MASRPAVSHDSTNDIFVSANACLQNFPFGREALGHQLLLFAALL PAALEGYWSDITNPALQLSPTRRNELYLYVQNALRFLVSLLSEWSDKLAQSLLGSADA VARQVARHVDTPWDVRSIAGLLIGHLARFSNRFGDYIAECSKPQSEQDLPVQTAALLV LRRTDYAEYAPQALAILKSIIAVGERESSVSNLLVFLSKHLFIYSKSLGEMPAGAEGI IYRQILAELQVFALQNISSGTDSVRHMSSALLRQVLQVALPEEELFQVVYRQFEARVA PLNASCLALEQLVAVAGVGRSLDNCPSLFAVIFPRFLGCEDSVDALFKAMMVSAHKTQ PFAEWHRLWFGQLLAAIEVPEKRRPVIEQLLTQAVQLEPHSLAQLLLRDARLPLSSKL SAILSVRQLSERRQELLQQLRTEVEQALLGLDDHTRLLALRFVVETPRRSEHLTKEEA QAIHLYLQHNANNPSAHLRQLGYGLLQKALRRIQLGLAEHQKRPSAAGKELHSLLINL TSHLARNLFPTANYGRRWLSLHLLQDCLAVGLPSEELLLPAEAVENLEHCLGDSYEHN KLLAARLLKRLQSCSRFRPEEIMELLVSLRPPDSVTGAFRLQVYCEAKEVAYELPSKS PGEAKESRTHRALLWLLNHLREGLSLAQSDLAEAAKLNPLYGLLFASRHLMQQLELQE LTREPSWRLYIEELVNICLEISCVALPVVSSASPEGHLPATRDQETDQPLANVLSRRL PSEALQQVRTTPQMVLLCAWRCIKEVCLILGELVQRAPLEDEQQEDDFLLSSKQLEAI GELFLQLLAETKHRGAFEQAYVGFTMLCRRLWHSEAVHLNRLPGQWVSEAMAMVSGEA SNHLCSTRRSAGMPFMLQALICTELRLGTHATLHRCMERLLEVCEQRAGGSSGITARS HALNILRALFRCSELADLVTEFMARGIQCALDGLLLAEEWAERNCATLLLAALIVRIF GVERARMESGELHVRNRMTGRIFFTRYPQLFDYFHAALQREAAEMDSSQVEKGRSGKR RQAVQLEAMLLMLSRLYPSSLEGTESTLNLSEFVPFLLKICRSHDLMTRERAALVVAN FVSQEQALAEIRRLVVELKALQLRLRLKASLHLDTNLLHGQLLLLLHLHRLVRWTRPP LTRMLLHTLASLAAPILQRDVCAFSALVDVMVAAMEDATELDFQLLTEIEAVYLLDHL EIHRRCREQGISMRFHQLFGLHLHRLRGITQGIVLHIVEDLSQPFWALDELKVELWLF ILLQRSLGKEEHSLVSQLDVEHFQFAGDIQRYYKTLSCEQREEIGQELYQSQAIRSCV LQMMKSASSGCWSLQLAGRLAALQPLLEQPGLDFNQLVKRCSEKYSSHQEAGLLLGLK RLIAERKKLERRHWTPLLNYALRLVDPVQPVYLRHQAAELCDLLARNHLKDQLGSEVA NMDVELVGRFIRLVLLLLLDEAEWVRHRAAQLVSSAGFRREKDRKVAILPSALTPEFL KVVLAQLQQQADDPEFLLRLFQLIAEPFLATEAKDGEPTVDEDGDAEVEVFDKQEINL YCEPLLILCQLSAAFRSQFGQSEQLMATIDALGLPADLV" misc_feature 2310..3101 /gene="THADA" /note="THADA/TRM732, DUF2428; Region: DUF2428; pfam10350" /db_xref="CDD:463054" polyA_site 5275 /gene="THADA" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtcaaggata tcttcttcag gaaggagcag caggatcagc aggatgagga tctggagcaa 61 gtggctcgct tcctcgccga tcttctcctc gcgagtcctt tgaagcacgc ggtgcgcaac 121 cagctgacca agtacgactt ttctccgtca attcgctgac caagcaaaag gatgacccga 181 aaaggagttt ctccaaggaa cagctgctgg aggcactgca gcattccctc gccgagatgg 241 ccagccgtcc agctgtaagc cacgattcca ccaacgatat ctttgtgtct gcgaatgcct 301 gcctgcagaa ctttcccttt ggccgcgagg ctctgggtca ccagttgctc ctcttcgccg 361 ccctgctgcc cgccgccctg gagggctact ggtcggatat caccaatccc gccctgcaac 421 tctcgcccac gcgtcgcaat gagctctacc tctacgtgca gaatgccctg cgcttcctgg 481 tcagcctgct gtccgagtgg agcgataagt tagcccaaag cttgctggga tcagcggatg 541 cggtggctcg gcaggtggcc cgccacgtgg acacgccctg ggatgtgcgc tccattgcgg 601 gcctgctcat cggtcacctg gcgcgtttct ctaaccgatt cggggattac attgcggagt 661 gctcgaaacc gcagtcggag caggatcttc ccgtccagac ggccgccctg ctcgtcctgc 721 ggcgcacgga ttacgcggag tatgctcccc aggcactggc tatcctaaaa tccatcatcg 781 cagtaggcga acgcgagagc agcgtgagca acctgctcgt ctttctgtcc aaacacctgt 841 tcatctactc caaatcgctg ggcgagatgc ccgcgggcgc agaggggatt atctaccggc 901 agatcctcgc ggagctgcaa gtgtttgccc tgcagaacat ctccagtggc acggattcgg 961 tgcggcacat gagtagcgcc ctgctgcgcc aggtgctgca ggtggctctc ccagaggagg 1021 agctcttcca ggtggtctac cggcagtttg aggcgcgcgt ggctcccctg aatgccagct 1081 gcctggcttt ggagcagctc gttgcggtgg cgggagtcgg gagatccctt gacaactgcc 1141 cctcgctgtt tgccgtcatc tttccgcgat tcctgggctg cgaggacagc gtggatgcct 1201 tgttcaaggc catgatggta tctgcccata agacacagcc cttcgccgag tggcaccgcc 1261 tgtggtttgg ccaacttctg gcggcgattg aggtgcccga gaagcgtcgt ccggtcatcg 1321 agcagctgct cacccaggcg gtgcagctgg aaccgcattc tctggctcag ctgctcctgc 1381 gggacgcccg cctgccgctc agcagcaagc tgtcggcgat tctcagcgtg cggcagctga 1441 gcgagcggcg gcaggagctc ctccagcagc tcaggacgga ggtggagcag gccctgctcg 1501 gcctggatga ccacactcgc ctcctggcgc tgcgcttcgt ggtggagacg ccgcgtcgca 1561 gcgagcattt gacgaaggag gaggcgcagg ccattcatct gtatctccag cacaatgcca 1621 acaatccgag tgcccatctc cgccagctgg gctatggtct gctgcagaag gctctgcggc 1681 gcatccaatt gggcctggcg gagcaccaga agcgtccctc tgcagcgggc aaggagctgc 1741 acagcctgct gatcaatcta accagccatc tggcgaggaa tctctttccc actgcgaact 1801 acggacgccg ctggctgtcg ctgcatttac tccaggattg cctggcggtg ggcctgccca 1861 gcgaggagct gctgctgccg gcggaggctg tggagaatct agagcactgc ctgggcgata 1921 gctatgagca caacaagctg ctggccgccc ggctactaaa gaggctgcaa tcgtgctcgc 1981 gcttccggcc ggaggagatc atggagctgc tggtctcgct aaggccaccg gattcggtta 2041 ccggagcctt tcgcctgcag gtttattgtg aggcaaagga ggtggcttat gagttgccta 2101 gcaagtctcc cggggaagca aaggaatcca gaacccatcg agctcttctg tggttgctta 2161 atcacttgag agagggcctg agcctcgccc aaagcgatct cgccgaggca gccaagctga 2221 atcccttgta cggcctgctc ttcgccagtc gccatctaat gcagcaactg gagcttcagg 2281 aactaaccag ggagcccagt tggcgtctct acattgagga actagtaaat atctgcctcg 2341 aaatcagttg cgtggccctg cccgtggtga gcagcgcctc gcccgagggc catttgcccg 2401 ccacccgcga ccaggagacg gatcagccgc tggccaatgt gctcagccgc cggctgccca 2461 gcgaggcact gcagcaggtg cggaccacgc cgcagatggt gctgctgtgc gcctggcgct 2521 gcatcaagga ggtgtgcctc atcctgggcg aactggtgca gcgagcgccg ctggaagatg 2581 agcagcaaga ggatgacttc ctgctcagca gcaagcaact ggaggccatt ggggagctgt 2641 tcctgcagct gctggccgag acgaagcatc gcggagcctt cgagcaggcc tacgtgggat 2701 tcacgatgct ctgccggcgc ttgtggcaca gcgaggcagt gcatctcaac cggctgcctg 2761 gccaatgggt gagcgaagcc atggcgatgg ttagtggaga ggcatccaat catctgtgct 2821 ccacgcgacg cagtgccggc atgccgttca tgctgcaggc gctcatctgc acggaactcc 2881 ggctgggcac ccatgccacc ctgcatcgct gcatggaacg gctgctggag gtgtgcgaac 2941 agagagcagg tggctcctcc ggcatcaccg cccgcagtca cgccttgaac atcctgcgcg 3001 ccctcttccg ctgcagcgaa ctggccgatc tggtcaccga attcatggct cgagggattc 3061 agtgcgcctt ggatggcctc ctgctggccg aggagtgggc ggagcggaac tgcgccactc 3121 tcctgctggc tgccctaatt gtccgcatct tcggggtgga gagggcgcga atggagagcg 3181 gggagctgca tgtgcgcaac cggatgacgg gacgcatctt cttcacccgc tatccgcagc 3241 tctttgacta ctttcatgcc gctctgcagc gggaggcggc ggagatggac tctagccagg 3301 tggagaaggg aaggagcggc aagcggaggc aggcggtaca gttggaggcc atgctgctca 3361 tgcttagccg tttgtatccc tcctcgctgg agggcaccga gtccaccttg aatctaagtg 3421 aatttgtgcc cttcctgctg aagatctgcc gctcccacga tctgatgacc cgcgaaaggg 3481 ccgccctggt ggtggccaac tttgttagcc aggagcaggc gcttgccgag atcaggcgac 3541 tggtggtgga gctcaaggcg ctgcagctgc gactgcggct caaggcatcc ctccacctgg 3601 acacgaatct cctgcatgga cagctgctgc tgctgctcca tctgcaccgc ctggtgcgct 3661 ggacgcgacc cccgctgacc aggatgctgc tgcacacgct cgcctccctg gcagctccca 3721 tcctccagcg cgacgtgtgt gcgtttagtg cgctggtgga cgtaatggtg gccgccatgg 3781 aggatgccac cgagcttgat ttccagttgc tgacggagat agaagctgtg tatttactag 3841 atcatttgga gatccacaga agatgccggg agcagggaat ctccatgcgt ttccaccagt 3901 tgtttggcct tcatctccac cgattgcgcg gcatcacgca gggaatcgtg ctgcacattg 3961 tcgaggatct aagccagccc ttctgggctt tggacgagct caaggtggag ctgtggctct 4021 ttattctgct gcagagatcg ctgggaaagg aggagcactc cttggttagc caactagatg 4081 tggagcactt ccagttcgcc ggcgatattc aacgctatta caagacttta agctgcgagc 4141 agcgggagga gattggccag gagctgtatc aatcgcaggc cattcgctcc tgcgttttgc 4201 aaatgatgaa gagtgcttct agcggctgtt ggagcctcca gctggcggga cgcctggctg 4261 ccctgcagcc gctgctcgag caaccgggat tggatttcaa tcagctggtc aagcgatgct 4321 cggaaaagta ctccagtcac caggaggcgg gtttgctgct gggtttaaag cgactgattg 4381 cggagaggaa gaagctggag aggagacact ggacaccgct gctgaactac gccctgcggc 4441 tggttgatcc cgtccagccg gtctacctgc gtcatcaggc tgccgaattg tgtgacttat 4501 tagctcgcaa tcatctaaag gatcagttgg gttcagaagt ggccaacatg gacgttgagc 4561 tggtcggtcg ttttatacgt ctcgtgctgc tcctgctgct ggacgaagcg gagtgggtgc 4621 gtcatcgggc tgcccagctg gtgagcagcg caggatttag gcgggaaaag gatcggaagg 4681 tagccatttt gcccagtgcc ctgactccgg agttccttaa agtggtgctg gcccaactgc 4741 agcagcaggc tgatgatcca gagttcctcc tgcgactctt ccaactcatc gccgagcctt 4801 tcctggccac cgaggcgaag gatggcgagc cgaccgtcga cgaggatggg gatgcggagg 4861 tggaggtgtt cgacaagcag gagatcaacc tctactgcga accgcttctg attctctgcc 4921 agctctccgc cgcctttcga tcgcagttcg gccaaagcga gcagctgatg gccaccattg 4981 atgcactggg acttccagcg gatttggttt aggattggga ttgaattgaa tggagaaagg 5041 tgctggcacc aggagcattt gatgggtaca acttgaacca tacgattttt gttaggaaaa 5101 aataaatagt ataaaatgtg cgtgtttttt aaaaaatgta aagtgtacat attaatatta 5161 agtatttccc atgattgtgt tcagttttcc cattgcattt caattgcatt tcttctttta 5221 acttttttaa ctgatgtgaa aattacatat tataaaaatt atatgtttgg gccaa