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LOCUS XM_070218713 5520 bp mRNA linear INV 09-DEC-2024 homolog (THADA), transcript variant X1, mRNA. ACCESSION XM_070218713 VERSION XM_070218713.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5520 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5520 /gene="THADA" /note="Thyroid adenoma-associated protein homolog; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108070210" CDS 80..5257 /gene="THADA" /codon_start=1 /product="tRNA (32-2'-O)-methyltransferase regulator THADA isoform X1" /protein_id="XP_070074814.1" /db_xref="GeneID:108070210" /translation="MNDLNLRVAALKLCAHPKRFAELRDSLVPLPKRWTSAPHGFVRR FAEAKSSAEQVVAVKDIFFRKEQQDQQDEDLEQVARFLADLLLASPLKHAVRNQLTKL FSVNSLTKQKDDPKRSFSKEQLLEALQHSLAEMASRPAVSHDSTNDIFVSANACLQNF PFGREALGHQLLLFAALLPAALEGYWSDITNPALQLSPTRRNELYLYVQNALRFLVSL LSEWSDKLAQSLLGSADAVARQVARHVDTPWDVRSIAGLLIGHLARFSNRFGDYIAEC SKPQSEQDLPVQTAALLVLRRTDYAEYAPQALAILKSIIAVGERESSVSNLLVFLSKH LFIYSKSLGEMPAGAEGIIYRQILAELQVFALQNISSGTDSVRHMSSALLRQVLQVAL PEEELFQVVYRQFEARVAPLNASCLALEQLVAVAGVGRSLDNCPSLFAVIFPRFLGCE DSVDALFKAMMVSAHKTQPFAEWHRLWFGQLLAAIEVPEKRRPVIEQLLTQAVQLEPH SLAQLLLRDARLPLSSKLSAILSVRQLSERRQELLQQLRTEVEQALLGLDDHTRLLAL RFVVETPRRSEHLTKEEAQAIHLYLQHNANNPSAHLRQLGYGLLQKALRRIQLGLAEH QKRPSAAGKELHSLLINLTSHLARNLFPTANYGRRWLSLHLLQDCLAVGLPSEELLLP AEAVENLEHCLGDSYEHNKLLAARLLKRLQSCSRFRPEEIMELLVSLRPPDSVTGAFR LQVYCEAKEVAYELPSKSPGEAKESRTHRALLWLLNHLREGLSLAQSDLAEAAKLNPL YGLLFASRHLMQQLELQELTREPSWRLYIEELVNICLEISCVALPVVSSASPEGHLPA TRDQETDQPLANVLSRRLPSEALQQVRTTPQMVLLCAWRCIKEVCLILGELVQRAPLE DEQQEDDFLLSSKQLEAIGELFLQLLAETKHRGAFEQAYVGFTMLCRRLWHSEAVHLN RLPGQWVSEAMAMVSGEASNHLCSTRRSAGMPFMLQALICTELRLGTHATLHRCMERL LEVCEQRAGGSSGITARSHALNILRALFRCSELADLVTEFMARGIQCALDGLLLAEEW AERNCATLLLAALIVRIFGVERARMESGELHVRNRMTGRIFFTRYPQLFDYFHAALQR EAAEMDSSQVEKGRSGKRRQAVQLEAMLLMLSRLYPSSLEGTESTLNLSEFVPFLLKI CRSHDLMTRERAALVVANFVSQEQALAEIRRLVVELKALQLRLRLKASLHLDTNLLHG QLLLLLHLHRLVRWTRPPLTRMLLHTLASLAAPILQRDVCAFSALVDVMVAAMEDATE LDFQLLTEIEAVYLLDHLEIHRRCREQGISMRFHQLFGLHLHRLRGITQGIVLHIVED LSQPFWALDELKVELWLFILLQRSLGKEEHSLVSQLDVEHFQFAGDIQRYYKTLSCEQ REEIGQELYQSQAIRSCVLQMMKSASSGCWSLQLAGRLAALQPLLEQPGLDFNQLVKR CSEKYSSHQEAGLLLGLKRLIAERKKLERRHWTPLLNYALRLVDPVQPVYLRHQAAEL CDLLARNHLKDQLGSEVANMDVELVGRFIRLVLLLLLDEAEWVRHRAAQLVSSAGFRR EKDRKVAILPSALTPEFLKVVLAQLQQQADDPEFLLRLFQLIAEPFLATEAKDGEPTV DEDGDAEVEVFDKQEINLYCEPLLILCQLSAAFRSQFGQSEQLMATIDALGLPADLV" misc_feature 2555..3346 /gene="THADA" /note="THADA/TRM732, DUF2428; Region: DUF2428; pfam10350" /db_xref="CDD:463054" polyA_site 5520 /gene="THADA" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tccagtctgt aactttttta gctttatttt ttgccggttc ccttcgatat ccttggaaat 61 ctccgatcct gaccgaaata tgaacgatct gaacctgcgc gtggcggccc tgaagctgtg 121 tgcgcacccc aagcgcttcg cggagctgcg cgactcgctc gttccgctgc ccaagcgctg 181 gacttccgct cctcatggat ttgtgcgtcg gtttgcggag gccaagagca gtgcggagca 241 ggtggtggcg gtcaaggata tcttcttcag gaaggagcag caggatcagc aggatgagga 301 tctggagcaa gtggctcgct tcctcgccga tcttctcctc gcgagtcctt tgaagcacgc 361 ggtgcgcaac cagctgacca aacttttctc cgtcaattcg ctgaccaagc aaaaggatga 421 cccgaaaagg agtttctcca aggaacagct gctggaggca ctgcagcatt ccctcgccga 481 gatggccagc cgtccagctg taagccacga ttccaccaac gatatctttg tgtctgcgaa 541 tgcctgcctg cagaactttc cctttggccg cgaggctctg ggtcaccagt tgctcctctt 601 cgccgccctg ctgcccgccg ccctggaggg ctactggtcg gatatcacca atcccgccct 661 gcaactctcg cccacgcgtc gcaatgagct ctacctctac gtgcagaatg ccctgcgctt 721 cctggtcagc ctgctgtccg agtggagcga taagttagcc caaagcttgc tgggatcagc 781 ggatgcggtg gctcggcagg tggcccgcca cgtggacacg ccctgggatg tgcgctccat 841 tgcgggcctg ctcatcggtc acctggcgcg tttctctaac cgattcgggg attacattgc 901 ggagtgctcg aaaccgcagt cggagcagga tcttcccgtc cagacggccg ccctgctcgt 961 cctgcggcgc acggattacg cggagtatgc tccccaggca ctggctatcc taaaatccat 1021 catcgcagta ggcgaacgcg agagcagcgt gagcaacctg ctcgtctttc tgtccaaaca 1081 cctgttcatc tactccaaat cgctgggcga gatgcccgcg ggcgcagagg ggattatcta 1141 ccggcagatc ctcgcggagc tgcaagtgtt tgccctgcag aacatctcca gtggcacgga 1201 ttcggtgcgg cacatgagta gcgccctgct gcgccaggtg ctgcaggtgg ctctcccaga 1261 ggaggagctc ttccaggtgg tctaccggca gtttgaggcg cgcgtggctc ccctgaatgc 1321 cagctgcctg gctttggagc agctcgttgc ggtggcggga gtcgggagat cccttgacaa 1381 ctgcccctcg ctgtttgccg tcatctttcc gcgattcctg ggctgcgagg acagcgtgga 1441 tgccttgttc aaggccatga tggtatctgc ccataagaca cagcccttcg ccgagtggca 1501 ccgcctgtgg tttggccaac ttctggcggc gattgaggtg cccgagaagc gtcgtccggt 1561 catcgagcag ctgctcaccc aggcggtgca gctggaaccg cattctctgg ctcagctgct 1621 cctgcgggac gcccgcctgc cgctcagcag caagctgtcg gcgattctca gcgtgcggca 1681 gctgagcgag cggcggcagg agctcctcca gcagctcagg acggaggtgg agcaggccct 1741 gctcggcctg gatgaccaca ctcgcctcct ggcgctgcgc ttcgtggtgg agacgccgcg 1801 tcgcagcgag catttgacga aggaggaggc gcaggccatt catctgtatc tccagcacaa 1861 tgccaacaat ccgagtgccc atctccgcca gctgggctat ggtctgctgc agaaggctct 1921 gcggcgcatc caattgggcc tggcggagca ccagaagcgt ccctctgcag cgggcaagga 1981 gctgcacagc ctgctgatca atctaaccag ccatctggcg aggaatctct ttcccactgc 2041 gaactacgga cgccgctggc tgtcgctgca tttactccag gattgcctgg cggtgggcct 2101 gcccagcgag gagctgctgc tgccggcgga ggctgtggag aatctagagc actgcctggg 2161 cgatagctat gagcacaaca agctgctggc cgcccggcta ctaaagaggc tgcaatcgtg 2221 ctcgcgcttc cggccggagg agatcatgga gctgctggtc tcgctaaggc caccggattc 2281 ggttaccgga gcctttcgcc tgcaggttta ttgtgaggca aaggaggtgg cttatgagtt 2341 gcctagcaag tctcccgggg aagcaaagga atccagaacc catcgagctc ttctgtggtt 2401 gcttaatcac ttgagagagg gcctgagcct cgcccaaagc gatctcgccg aggcagccaa 2461 gctgaatccc ttgtacggcc tgctcttcgc cagtcgccat ctaatgcagc aactggagct 2521 tcaggaacta accagggagc ccagttggcg tctctacatt gaggaactag taaatatctg 2581 cctcgaaatc agttgcgtgg ccctgcccgt ggtgagcagc gcctcgcccg agggccattt 2641 gcccgccacc cgcgaccagg agacggatca gccgctggcc aatgtgctca gccgccggct 2701 gcccagcgag gcactgcagc aggtgcggac cacgccgcag atggtgctgc tgtgcgcctg 2761 gcgctgcatc aaggaggtgt gcctcatcct gggcgaactg gtgcagcgag cgccgctgga 2821 agatgagcag caagaggatg acttcctgct cagcagcaag caactggagg ccattgggga 2881 gctgttcctg cagctgctgg ccgagacgaa gcatcgcgga gccttcgagc aggcctacgt 2941 gggattcacg atgctctgcc ggcgcttgtg gcacagcgag gcagtgcatc tcaaccggct 3001 gcctggccaa tgggtgagcg aagccatggc gatggttagt ggagaggcat ccaatcatct 3061 gtgctccacg cgacgcagtg ccggcatgcc gttcatgctg caggcgctca tctgcacgga 3121 actccggctg ggcacccatg ccaccctgca tcgctgcatg gaacggctgc tggaggtgtg 3181 cgaacagaga gcaggtggct cctccggcat caccgcccgc agtcacgcct tgaacatcct 3241 gcgcgccctc ttccgctgca gcgaactggc cgatctggtc accgaattca tggctcgagg 3301 gattcagtgc gccttggatg gcctcctgct ggccgaggag tgggcggagc ggaactgcgc 3361 cactctcctg ctggctgccc taattgtccg catcttcggg gtggagaggg cgcgaatgga 3421 gagcggggag ctgcatgtgc gcaaccggat gacgggacgc atcttcttca cccgctatcc 3481 gcagctcttt gactactttc atgccgctct gcagcgggag gcggcggaga tggactctag 3541 ccaggtggag aagggaagga gcggcaagcg gaggcaggcg gtacagttgg aggccatgct 3601 gctcatgctt agccgtttgt atccctcctc gctggagggc accgagtcca ccttgaatct 3661 aagtgaattt gtgcccttcc tgctgaagat ctgccgctcc cacgatctga tgacccgcga 3721 aagggccgcc ctggtggtgg ccaactttgt tagccaggag caggcgcttg ccgagatcag 3781 gcgactggtg gtggagctca aggcgctgca gctgcgactg cggctcaagg catccctcca 3841 cctggacacg aatctcctgc atggacagct gctgctgctg ctccatctgc accgcctggt 3901 gcgctggacg cgacccccgc tgaccaggat gctgctgcac acgctcgcct ccctggcagc 3961 tcccatcctc cagcgcgacg tgtgtgcgtt tagtgcgctg gtggacgtaa tggtggccgc 4021 catggaggat gccaccgagc ttgatttcca gttgctgacg gagatagaag ctgtgtattt 4081 actagatcat ttggagatcc acagaagatg ccgggagcag ggaatctcca tgcgtttcca 4141 ccagttgttt ggccttcatc tccaccgatt gcgcggcatc acgcagggaa tcgtgctgca 4201 cattgtcgag gatctaagcc agcccttctg ggctttggac gagctcaagg tggagctgtg 4261 gctctttatt ctgctgcaga gatcgctggg aaaggaggag cactccttgg ttagccaact 4321 agatgtggag cacttccagt tcgccggcga tattcaacgc tattacaaga ctttaagctg 4381 cgagcagcgg gaggagattg gccaggagct gtatcaatcg caggccattc gctcctgcgt 4441 tttgcaaatg atgaagagtg cttctagcgg ctgttggagc ctccagctgg cgggacgcct 4501 ggctgccctg cagccgctgc tcgagcaacc gggattggat ttcaatcagc tggtcaagcg 4561 atgctcggaa aagtactcca gtcaccagga ggcgggtttg ctgctgggtt taaagcgact 4621 gattgcggag aggaagaagc tggagaggag acactggaca ccgctgctga actacgccct 4681 gcggctggtt gatcccgtcc agccggtcta cctgcgtcat caggctgccg aattgtgtga 4741 cttattagct cgcaatcatc taaaggatca gttgggttca gaagtggcca acatggacgt 4801 tgagctggtc ggtcgtttta tacgtctcgt gctgctcctg ctgctggacg aagcggagtg 4861 ggtgcgtcat cgggctgccc agctggtgag cagcgcagga tttaggcggg aaaaggatcg 4921 gaaggtagcc attttgccca gtgccctgac tccggagttc cttaaagtgg tgctggccca 4981 actgcagcag caggctgatg atccagagtt cctcctgcga ctcttccaac tcatcgccga 5041 gcctttcctg gccaccgagg cgaaggatgg cgagccgacc gtcgacgagg atggggatgc 5101 ggaggtggag gtgttcgaca agcaggagat caacctctac tgcgaaccgc ttctgattct 5161 ctgccagctc tccgccgcct ttcgatcgca gttcggccaa agcgagcagc tgatggccac 5221 cattgatgca ctgggacttc cagcggattt ggtttaggat tgggattgaa ttgaatggag 5281 aaaggtgctg gcaccaggag catttgatgg gtacaacttg aaccatacga tttttgttag 5341 gaaaaaataa atagtataaa atgtgcgtgt tttttaaaaa atgtaaagtg tacatattaa 5401 tattaagtat ttcccatgat tgtgttcagt tttcccattg catttcaatt gcatttcttc 5461 ttttaacttt tttaactgat gtgaaaatta catattataa aaattatatg tttgggccaa