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PREDICTED: Drosophila takahashii cypher (cyr), mRNA.


LOCUS       XM_070218712            2383 bp    mRNA    linear   INV 09-DEC-2024
ACCESSION   XM_070218712
VERSION     XM_070218712.1
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2383
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..2383
                     /gene="cyr"
                     /note="cypher; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein"
                     /db_xref="GeneID:108055732"
     CDS             610..2172
                     /gene="cyr"
                     /codon_start=1
                     /product="uncharacterized protein cyr"
                     /protein_id="XP_070074813.1"
                     /db_xref="GeneID:108055732"
                     /translation="MFSSSAAASSSSSSFSTRRGFNLGQQLLPVAIVIGVLHLPQFVC
                     HAGWATRTPENSINETTPSSASPSTMQIQTLQVNCSRELLEMRLELSRPFRGLLYAKD
                     FPLECRARGQDSTRLHLRIPTSGCGVRAEPLEDGSLEYTVRVMLQKEQKLRQSTDILS
                     AVRCQLPANAMGMALPVLRQDKGHERNARMRALAAAAVPALSVSAAPTTTTHHHHMET
                     PRVRIWLELGGPNGTGSVEVGVATTLTVRAIVPGNIGVRVVDCAALDGLGESTQQLLD
                     ARGCPIDDQVMPALHTQHRPAEEGWSKQHEEDLVERTFAATFPAFKFPDRERLHVSCG
                     VQLCKGKCPTLNCRQKTPPPALSAEQHLARIEVFNSLAVTAPQIEVDRLRYDRRHNMS
                     GEDYAPHVRGQPGPGEGTLCLSISKLAISFCVLGLIFLVAVVVAIFSLIRSRRRERRH
                     GAGLSLGLGLGLGIAGTSTSNSSSRLHRDRAEICTSMFSSSSESAQSQPRFGAKFLMP
                     YYPNTLPYGRVY"
     misc_feature    865..1662
                     /gene="cyr"
                     /note="Zona pellucida (ZP) domain; Region: ZP; smart00241"
                     /db_xref="CDD:214579"
ORIGIN      
        1 gattcggaat tggcccggtg cattgcatct gcacactcgg tggcgcgcgc ttgtcttctt
       61 gagttgagac ttcttcaacg ggcgtttcgc gagctttgct tcttgtttaa aatcttcttc
      121 tttttttttt acggtgttta ctgttttgca cttgagagcg tgtgaagtgc gcgcatgcgt
      181 agtggccgat aattaaccaa tttgaaaatt gcggttcttc tgcttttttt cgcaattcaa
      241 attgaccgca aaattgcgta aggaattcga ttttttttct atgtgcgaga atttatgaaa
      301 taaatggtga agagaacgag aagttacaaa tagattttaa agaggtgtga ataaagaata
      361 aaggaaggat aaactaaaat cgtttttcaa gacaagattc tcgaacttgg actcggagta
      421 ggccaattaa gagttagcca cgcggccaca cgaacaggtg tcgtctgttc cagcagcaac
      481 atcaacagca gcaacatcca gtgacagcag caacatcttg cgacagcagc aacaagtggc
      541 atcatttgcg gttttgatcg ccggggcggt tggtttgccg ttgccagctg aaaacgggaa
      601 atcggaaaca tgttctcctc cagcgccgcc gcatcctcat cctcatcctc cttttcgact
      661 cgccgtggct tcaatctcgg ccagcagctg ctgccggtgg ccatcgttat cggagtgttg
      721 catctgccgc agtttgtgtg tcatgctggc tgggcaacca gaacgccaga gaattccatc
      781 aatgagacga ccccctcctc cgcctccccc tccaccatgc aaatccagac gctgcaggtg
      841 aactgcagcc gggagctgct cgagatgcgg ctggagctga gccgaccctt ccggggactg
      901 ctctacgcca aggactttcc gctggagtgc cgggcgcggg gtcaggactc cacgcggctc
      961 catctccgca tccccacctc gggctgcggg gtgcgggcgg agcccctcga ggacggcagc
     1021 ctggagtaca ctgtgcgggt gatgctccaa aaggagcaga aactccgcca gagcaccgac
     1081 atcctcagcg ccgtgcggtg ccaacttccg gccaacgcca tgggcatggc acttccggtt
     1141 ctgcgacagg acaaaggaca cgagcggaat gccaggatga gggccttggc agcggctgcg
     1201 gttccggccc tctcagtatc agcagcaccg accaccacca cccaccacca tcacatggag
     1261 acgccgcggg ttaggatctg gctggaattg ggcggtccca acggaaccgg gtccgtggag
     1321 gtgggcgtgg ccaccaccct caccgtgcgg gccatcgttc ccgggaatat cggagtgcgg
     1381 gtggtggact gtgcggccct cgacggactg ggagagtcca cgcagcagct gctggacgcc
     1441 cggggctgtc ccatcgacga ccaggtaatg cccgctctgc acacccagca ccgaccggcg
     1501 gaggagggat ggtccaagca gcacgaggaa gacctggtcg agcggacgtt cgcggccacg
     1561 tttcccgcct tcaagttccc ggaccgcgaa cgcctccacg tcagctgtgg cgtgcagctc
     1621 tgcaagggga agtgtccgac tctaaactgt cgccaaaaga ctcccccgcc ggcgttgagt
     1681 gccgagcagc acctggcccg catcgaggtg ttcaattcgc tggccgtgac agctccccaa
     1741 atcgaggtgg accgcctgcg atacgacagg cgccacaata tgagcggaga ggactatgcg
     1801 ccccatgtga ggggtcagcc ggggcccggc gagggaaccc tctgcctgtc catctccaag
     1861 ctggccatct cgttctgcgt gctgggcctg atcttcctgg tggccgtggt ggtggccatc
     1921 ttctcgctga tccgatcgcg ccgtcgcgag cgtcgccatg gagccggact gagtttgggc
     1981 ttgggcctgg gactgggcat cgccgggacg agcacctcga acagcagcag ccggctgcac
     2041 cgggatcggg ccgagatctg cacctcgatg ttctcgtcca gcagcgagtc ggcgcagtcg
     2101 cagccgcgct tcggggccaa gttcctgatg ccctactatc ccaataccct gccctacggc
     2161 cgtgtctact aactgattaa cgggctggaa gagggcctcc cagagactga cggattcgtc
     2221 taacgagtgg taccaaaata aggtctaact ttagcaatat tatcgttcgg ttggccgaaa
     2281 ggatcttgaa agcgttttgc aagcggttcg ggggccaaaa tgtgttttga tgtcctttcg
     2341 ctgtagtagt atttaataac ctacatatct taaaataaat aaa