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LOCUS XM_070218706 2316 bp mRNA linear INV 09-DEC-2024 variant X3, mRNA. ACCESSION XM_070218706 VERSION XM_070218706.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2316 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2316 /gene="mh" /note="maternal haploid; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108054088" CDS 116..2263 /gene="mh" /codon_start=1 /product="DNA-dependent metalloprotease SPRTN isoform X3" /protein_id="XP_070074807.1" /db_xref="GeneID:108054088" /translation="MAEGDDYLFALMLHAQLNEEEEPRNSPPSGENTNKESDHQLALK IQALLNASDDEEAAAQQAAPGDLDSSFQFVYPSNKSQNHSKSSTMSNNKKTTSKNRGG AGKEPPYALQSTYDDYLNQTQNLVHPQWELVDPTPDIFAMFLRFDDKFFQKRLGAVAL EWSKKMYSCAGICYQRGNRYVKEVTIRLSEPLLKLRPRKDLVETLLHEMIHAYCFVLN IREGNGGHGPMFKRIMETINKVAGTNITVYHSFHDEVNAYKTHIWRCTGICQNRTPFQ GYVKRTSNRAPGPNDQWWAKHQRECGGTFMKLGEPAKPPKPAKKEKKLPAEASSMRNW LDRPPAAKKPDNLEGKGPPAKKPATGEALLDNMEGRGPPAWFMERIKGSSKSRGANIM SFGDLSKSGEAGRGSSSSSQMSGAGYSVGGASEVIDITGDESPDPSQLRKIRLERFEG GKSTNQKRRRGSEDEGITTWESYDEDVMVRDVPTPMINLLNSDDSDEEQEKPKIRARN TMSSQERTQSIKREVMEDEAIYSEDEILMIDDEYDENDDSLTAATELADQSILDDLFG QDTLLEEFQLENSVQPSGSRGYSSNVDNDIVSCPICFEKMKRTELGNHFEGCTITVRV EPPSFNKKKPEESKASRKSSSSSKQTLRNCGYTENEIAKLNLSSSSSEDELTPRQRRQ RNLFKQTVGCPKCGQELMGHQLEAHRSICKKRR" misc_feature 524..1036 /gene="mh" /note="SprT homologues; Region: SprT; smart00731" /db_xref="CDD:214794" misc_feature 1901..1969 /gene="mh" /note="Rad18-like CCHC zinc finger; Region: ZnF_Rad18; smart00734" /db_xref="CDD:128973" ORIGIN 1 atcgaaacat cgattcccac ctctaagcgc gaagaaattg gtttcttttg attttcacct 61 cgatctgcgt cttatttctg gccgagatta ggctaggcat catccattat ccacgatggc 121 cgaaggcgac gactacctgt ttgccctgat gctgcacgcc cagctgaacg aggaggagga 181 gcccagaaac tctccaccaa gtggggagaa cactaacaaa gaatcggacc accagctggc 241 cctcaagata caggcgctgc tcaacgcatc cgacgacgag gaggcagcgg cgcagcaggc 301 ggcgcctggc gatttagaca gcagctttca gtttgtctat ccctcgaaca aaagtcaaaa 361 tcattccaaa tcgagcacaa tgagcaacaa taagaaaact acgagcaaaa atcgcggtgg 421 agcgggcaag gagccaccat acgctttgca gtccacctac gatgattatc tcaatcagac 481 gcagaatctg gtgcatccgc agtgggagct ggtcgatccc acgcccgata tctttgccat 541 gttcctgcgc ttcgacgata agttcttcca gaagcgtctg ggcgccgtgg ccctcgaatg 601 gagcaagaag atgtactcct gcgcgggaat ttgctaccag cggggcaatc gttatgtcaa 661 ggaggtgacc attcggctga gcgagccgct gcttaagttg cgtccgcgca aggatctcgt 721 ggagacgctg ctgcacgaga tgatccacgc ctattgcttt gtgctcaaca ttcgcgaggg 781 caacggcggc catggtccca tgttcaagcg catcatggag acgatcaaca aggtggctgg 841 gaccaatatc accgtctatc actccttcca cgacgaggtg aacgcttata agacgcacat 901 ttggcgctgc acgggcatct gtcagaatcg cacgcccttt cagggctatg taaagcgcac 961 gagcaaccgg gcacctggtc caaatgacca gtggtgggcg aagcatcagc gggagtgcgg 1021 cggcaccttc atgaagctgg gggagcctgc aaaaccaccc aaacccgcca agaaggagaa 1081 gaagctgccc gctgaggctt cctccatgcg caattggctg gataggccac cggcagccaa 1141 gaagccggac aatctggagg gcaaagggcc gccagctaag aagccagcga ctggcgaggc 1201 tttgctggac aatatggagg gcagagggcc accagcctgg tttatggaac gcattaaggg 1261 ctcctccaag tcgcgtggtg ccaacatcat gagcttcggc gatctcagca agagtggcga 1321 agcaggcaga ggatcctcct cctcctccca gatgagcgga gcaggctaca gcgtgggtgg 1381 cgccagcgag gtgatcgata taaccggcga tgagagtccc gatccctcgc aactacgcaa 1441 gattcgcctg gagcgcttcg aaggaggtaa atccaccaac caaaagcgac gtcgcggctc 1501 cgaggatgag ggaataacca cctgggagtc gtacgacgag gatgtgatgg tcagggacgt 1561 gcccacgccc atgattaacc tgctgaatag cgatgatagc gatgaggagc aggagaagcc 1621 aaagatcagg gccagaaaca ccatgagcag ccaggagcgc acgcagagca tcaagcgcga 1681 ggtgatggag gacgaggcca tttactccga ggacgagatc ctcatgatcg acgacgagta 1741 cgatgaaaat gacgatagcc tcacggcggc caccgagctg gccgatcagt cgattttaga 1801 tgatctcttt ggccaggaca cgctgctcga ggagttccag ctggagaact ccgtgcagcc 1861 gagcggatcg cgcggatact cgagcaatgt ggacaacgac attgtctcct gtcccatttg 1921 cttcgagaag atgaagcgca ccgagttggg caatcatttc gagggctgca ccatcaccgt 1981 gcgtgtggag ccgccgtcgt ttaataagaa gaagccagag gagtctaaag cctccaggaa 2041 gagctcctcc tcctccaagc aaaccctgcg caactgcggc tacaccgaaa atgagatagc 2101 caaactgaat ttgagctcct cctccagcga ggatgagcta acgccacgcc agcgccgcca 2161 gcgcaatctc ttcaagcaga ccgtcggctg ccccaagtgc ggccaggagc tgatgggcca 2221 ccagctggag gcgcaccgct ccatttgcaa gaagaggcgt tagaaagtta aatttatcat 2281 tctttgtttt ctaactgatt aaataatgtt acaaaa