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LOCUS XM_070218702 2825 bp mRNA linear INV 09-DEC-2024 singed (sn), transcript variant X1, mRNA. ACCESSION XM_070218702 VERSION XM_070218702.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2825 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2825 /gene="sn" /note="fascin domain-containing protein singed; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins" /db_xref="GeneID:108057734" CDS 109..1728 /gene="sn" /codon_start=1 /product="protein singed isoform X1" /protein_id="XP_070074803.1" /db_xref="GeneID:108057734" /translation="MLILLILFAYATKPESGDSPKIAPISTMNGQGCELGHSNGDIIS QNQQKGWWTIGLINGQHKYMTAETFGFKLNANGASLKKKQLWTLEPSNTGESIIYLRS HLNKYLSVDQFGNVLCESEERDAGSRFQISISEDGSGRWALKNESRGYFLGGTPDKLV CTAKTPGASEFWTVHLAARPQVNLRSIGRKRFAHLSESQDEIHVDANIPWGEDTLFTL EFRAEEGGRYALHTCNNKYLNANGKLQVVCNEDCLFSAEYHGGHLALRDRSGQYLSPI GSKAVLKSRSSSVTRDELFSLEDSLPQASFIAGLNLRYVSVKQGVDVTANQDEVGENE TFQLEYDWSAHRWALRTTQDRYWCLSAGGGIQATGNRRCADALFELIWHGDGSLSFRA NNGKFLATKRSGHLFATSESIEEIAKFYFYLINRPILVLKCEQGFVGYRTPGNLKLEC NKATYETILVERAQKGLVHLKAHSGKYWRIEGESISVDADAPSDGFFLELREPTRICI RSQQGKYLGATKNGAFKLLDDGTDSATQWEF" misc_feature 253..642 /gene="sn" /note="first fascin-like domain, beta-trefoil fold, found in Drosophila melanogaster protein singed and similar proteins; Region: beta-trefoil_singed_rpt1; cd23347" /db_xref="CDD:467455" misc_feature order(259..261,268..270,274..276,370..372,376..378, 400..402,406..408,499..501,529..531,535..537,628..630) /gene="sn" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:467455" misc_feature order(346..354,361..363,637..639) /gene="sn" /note="putative actin-binding site [polypeptide binding]; other site" /db_xref="CDD:467455" misc_feature 643..1005 /gene="sn" /note="second fascin-like domain, beta-trefoil fold, found in Drosophila melanogaster protein singed and similar proteins; Region: beta-trefoil_singed_rpt2; cd23351" /db_xref="CDD:467459" misc_feature 874..888 /gene="sn" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:467459" misc_feature 1009..1383 /gene="sn" /note="third fascin-like domain, beta-trefoil fold, found in Drosophila melanogaster protein singed and similar proteins; Region: beta-trefoil_singed_rpt3; cd23355" /db_xref="CDD:467463" misc_feature order(1261..1263,1369..1383) /gene="sn" /note="putative actin-binding site [polypeptide binding]; other site" /db_xref="CDD:467463" misc_feature 1384..1725 /gene="sn" /note="fourth fascin-like domain, beta-trefoil fold, found in Drosophila melanogaster protein singed and similar proteins; Region: beta-trefoil_singed_rpt4; cd23359" /db_xref="CDD:467467" misc_feature order(1384..1389,1486..1488,1492..1494,1504..1506, 1510..1512,1597..1602) /gene="sn" /note="putative actin-binding site 2 [polypeptide binding]; other site" /db_xref="CDD:467467" misc_feature order(1384..1389,1486..1488,1492..1494) /gene="sn" /note="putative actin-binding site [polypeptide binding]; other site" /db_xref="CDD:467467" misc_feature 1402..1416 /gene="sn" /note="putative actin-binding site [polypeptide binding]; other site" /db_xref="CDD:467467" polyA_site 2825 /gene="sn" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gttctgatga aaacaacaaa taaagttatc aattcatctt aatcttaaat gtcacgtctg 61 gttgtataaa atcttaaaac cttttcgatt attgtatatg actcagttat gttgatattg 121 ttgatacttt ttgcctacgc cactaagccg gaatccggag acagccccaa gattgctccc 181 atcagcacca tgaacggcca gggctgcgag ctgggccaca gcaacgggga catcatctca 241 cagaaccaac agaagggatg gtggaccatc ggcctgatca acggccagca caagtacatg 301 accgcggaga cctttgggtt caagctcaac gccaatggcg ccagtctgaa gaagaagcag 361 ctgtggacgc tggaaccctc gaacaccggt gaaagtatta tctacttacg atctcatctg 421 aacaagtacc tttcggtcga tcagtttggc aacgtgctgt gcgagagcga ggagcgggac 481 gcgggcagcc gcttccagat cagcatcagc gaggacggca gcggccgctg ggcgctgaag 541 aacgagtcgc gcggctattt cctcggcggc actccggaca aactggtctg cacggccaag 601 acgcccggcg ccagtgagtt ctggacggta catttggctg cccggccgca ggtgaatctg 661 cgctccatcg gacgcaagcg gttcgcccat ctctccgagt cgcaggacga gatccatgtg 721 gacgccaaca ttccgtgggg cgaggatacg ctctttacgc tcgagtttcg tgccgaggag 781 ggcggtcgat atgccctgca cacgtgcaac aacaaatatc tgaacgccaa tggcaaactg 841 caggtggttt gcaacgagga ttgcctgttc agcgccgaat atcatggcgg tcatctggcg 901 ctgcgcgatc gcagcggtca atacttgtcg cccattggct ccaaggcggt actcaagtcg 961 cgctcgtcgt cggtgacgcg ggacgagctc ttctcgctgg aggactcgct gccccaggcc 1021 tcgttcatcg cgggcctcaa tttgcgatat gtgagcgtga agcagggcgt cgatgtgacg 1081 gccaaccagg atgaggtggg cgagaacgag acgttccagc tggagtacga ctggtcggcg 1141 caccgctggg ccctgcgcac cacccaggat cgctactggt gcctctcggc cggcggcggc 1201 atccaggcca ccggcaatcg ccgctgcgcc gacgccctct tcgagctcat ttggcacggc 1261 gacggatcac tgtcgttccg ggccaacaac ggcaagttct tggccaccaa gcgctcgggc 1321 catctgttcg ccacctcgga gtccatcgag gagatagcca agttctactt ttacttgatc 1381 aatagaccaa ttctcgtgct gaagtgcgag cagggattcg tgggctatcg cacgcccggc 1441 aacctgaagc tggagtgcaa caaggccacc tacgagacca tcctggtgga gcgcgcccaa 1501 aaggggctgg ttcacctgaa ggcgcacagc ggcaagtact ggcgcatcga gggcgagagc 1561 atctcggtgg acgccgatgc gcccagcgat ggattcttcc tggagcttcg cgagccgacc 1621 aggatctgca taagatcgca gcagggcaag tatctgggcg ctacgaagaa cggggcgttc 1681 aagctgctgg acgatggcac cgattcggcc acccagtggg agttctaggg cgggaccacg 1741 cccactcccg aacgggctgc tgcacgcgtc atcagtatca caatcacaca cacacttccc 1801 atccaggcgg ggattcccta attatcgatc cgcgcaactg aagcgccgag agaagtcgtc 1861 gcacaatgaa tttgagatcc taaacagcaa ttgcaacatt gaaacgagaa aagaaggaga 1921 aaaggagaga tgcgagtgaa tggagaaaat gaaaacttaa acaacaacaa acaaaaactt 1981 atatatttat atataaagat ctacgtatac atagaaagag agattttttt taaacaacct 2041 atttagcttt ttatacgttt tatatgagat gagaatatct acgaaacaag aacaagaaac 2101 aaatttttta gcgtagacta cgaaacgaaa cttctgtcgc gagtccttcc gttttatcaa 2161 atatatatca gcaactaggc cagcaaaaat gaagaaagac ataatggtta tacaagcaca 2221 tcatatatac acctaaatat acatatttga ttcgtaaagc ttagcggaat aaaaaaccgg 2281 aaaaaaagat aagggaaata agagcaagaa aacataaata aatgaaaaaa gaaaaaaaat 2341 aaaaataaat caacacatat tcctataaat ttatttatat atttatatac atattgatat 2401 aaacgataac acacggacac acacatacac atacacacga ccccacacac gcacacgtac 2461 ccacatgtac ccacacaccc acaaacccac aaacccaagc aagcaatttt aatacgcaaa 2521 acaaaattta gccactaagc aaaccttaaa aattaatctg taataaaaac aaagtcaaaa 2581 attaaacatc aaatctctcc gtacggcgat tttgcaatgg aatcatctcc actatatcta 2641 acatatgcat atattgaatt agttttttgt tatttatttg cgtcgatttc ttaattaatt 2701 agtaatcttt ttttttttaa tttgtgcact tcaaatcgaa acaaaaaact caaaccaatt 2761 tagttgctaa atcttaaaat ggaaattttg tatgatacat atgaaatata tacatatata 2821 caaga