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LOCUS XM_070218686 6954 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_070218686 VERSION XM_070218686.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq; corrected model. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## internal stop codons :: corrected 2 genomic stop codon ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..6954 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6954 /gene="LOC108067218" /note="protein tweety; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108067218" CDS 683..5047 /gene="LOC108067218" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: substituted 2 bases at 2 genomic stop codons" /codon_start=1 /transl_except=(pos:2642..2644,aa:OTHER) /transl_except=(pos:4337..4339,aa:OTHER) /product="LOW QUALITY PROTEIN: protein tweety" /protein_id="XP_070074787.1" /db_xref="GeneID:108067218" /translation="MEQPSILVKILHSIPHVNYTFRRVNDTFNPDSDVYLESLGILAS IPAGLLIVSLLGLLLYLLTRCCDRRQRKPSAQRCQSCSLVIITLMTCAAIGLGLYGND DFHNGLLQAFGSGKNVEGLVLTLKRQTESIKHDLEMRMAGHKVEQLVEKPQYNQTVVM LLIETSRLVTENTSRAVASLDSMVHYFMKAKGSENDTSLMGLLQLGEFYESIRWPATL AFLTVLLLLCTVLVIGVARRSRCTLIFFSVSGLFCIIICWLLAGVYLASSVAAGDFCM RPHDYMCRQVGMRSPYVDFLNCGTPRNRFILRLNESRDLVDRARESVEQMQRMSQDTY PHIDIQRTLNAMDSDLETTLRNLTTLSATLDRRAIDMHYEEALRGLCGGGLLGLSLMM VAGLLTSFLLTILVYADSHAWIYLSKRPTLDADKSETTPLFPASNAPSASISPTAPPN TGTINRTLLHHQQQASAGGGSGNLPGSGGLGGGGVGGGGLGGGGANGHNGVGHYRNGT AGLRQGLASPSSQSSHTSSTATYNNHNNGTTTGYNNSHQQQQHHHNNLYSNHHHHYYS NNSTQHRTNSAAGAVVAAVGVASSSGQRSPSPPPGYDLVHGTRSGHHTLGRLPSHHQQ SATYLPGPNNGKYATLSKQCKTLESNDFYXDSLACSSHAGSSSNTAQQQHQQQMLVQQ QSSLINQNQVQSQSTLKNIFASATLPRSTGSSIRSVLSVQTSNAGICRSTGNGLDGGG DLVDDRDPRDVTNNSFNRFDPKYISIGPKAVRGQNNNLNIMSAAGTANKCATLRHVGR YGGSLKGVSAVNATPSPAAAAPAVHSPNLRSAITPSIATVSKDYCQQPDCIPQEFLLQ QQQLQQQQQQQLQQQHQLQQTQVQLQQQPQIVPPAPPQPAPPPPPKPKIVNTFTEIPG TTGVGSSYAKEQQHQQQLLALQQQRERELQQQQLQQRELHPPTTHILPPSAVYSIESS DVVLPTAAPRVQQRSLNPASIINQPLPDIPTNQQQAKISAQPLCAASLGQYRSLQRPQ TQKLQPVVISSPQQPPTLPPKNRHKNSNRGGAVDAVSNANHNHLQTLPPKSASLRQQQ QQQQERERDRERERERPRRAETLDNARSYIDQQYPSHLITTSNMKKQHSYDSSYHQQQ QQAFYQRQHNNNFSSKQQQQLMLEQHQQQQQALFYRSLKRGERGGAGSATAGATGGGA AISNHSDLYSVTELXECACCGGGVDVVRRGASSTSLHAAAATQTQSHNQNPTTQSQNQ EPVPLPPKKHRQRERERERNLEREQREQAPCNANLCEEHEYDEYYPQAYEIQAAGGGG SGGGVTTNSGSKHGKQSQQRAATFDVADARDYELKRLGNRRSQQQAAPSKRNGGGGAA PVSQEHHRSHDRERSRSDHRIASYACEEVNSSALCSAGSMSSMLQPANGTGHRSSSHQ RDHHQRDQRERREKTFKV" misc_feature 692..1996 /gene="LOC108067218" /note="Region: Tweety; pfam04906" /db_xref="CDD:461475" misc_feature order(1781..1783,1790..1792) /gene="LOC108067218" /note="putative pore region [active]" /db_xref="CDD:143653" polyA_site 6954 /gene="LOC108067218" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aacccagggc tacaatagcg attattcgat tgttgtcgaa atgtctggca gccccggaca 61 ctatcgaata gtcctcagtt tttgtgccag ctctaaaaaa aactgagttt tcccgtgttt 121 tatggttttt gtcacagaag tttttgctaa atgaacatgt aaaacaaacc cgatttgtgc 181 ggtggatcgg ggacttaaga aacggagctg ttcgagggct aaggattcga ttaaagggtg 241 aaccgtaaaa gccgccgatt gtctgtgtgc tcgacttgtg aaagtgacgg ctgaagtgaa 301 agaaaaggaa gaaaaggagc acagaggctg cgaagcggaa cgaaccggaa acgagacggc 361 ttgcggctcg acacgaaacg cggtggcgtt ttgtgacgtc aaaagcagcg acgtccttcg 421 ctggcagaca cacacataca cacggacgca cgctcactga cagacacaat accacactga 481 gagaaacaga aactcccacc aagagagccc tccccctcaa caacgacaac aagagcagca 541 gcgaaagcaa caaaatagaa atagagagag gatttaaatt tcctttgttg aacaacgagt 601 gtgcatgtgt gtgtgtgttg tttaaggcag ccgcacaact acaactgcaa ctagcaacaa 661 caactgaaac agccttacaa aaatggaaca gccgagcatt ctcgtcaaaa tcctgcactc 721 tattccgcat gtgaattaca cattccgtcg ggttaacgac accttcaatc cggacagcga 781 tgtttacctc gagagtctgg gcatcctggc gtccattccc gccggtcttc tgatcgtttc 841 gctgctgggc ctgctcctgt acctgttgac caggtgctgc gatcgtcgcc aaaggaagcc 901 gagcgcccag cgctgccaga gctgttcgct ggtcatcatc acgctgatga cttgtgctgc 961 catcggatta ggtttgtacg gaaacgatga cttccataat ggcctgcttc aggcctttgg 1021 atccgggaag aacgttgagg gtcttgtgct caccttaaaa cgacagacgg agagcattaa 1081 acacgaccta gagatgcgga tggccgggca caaggtggag cagctggtgg agaagccaca 1141 atacaaccag acggtggtca tgctactcat cgagacttct cggctggtca cggagaacac 1201 ctcgcgggcg gtggcttcgc tggacagcat ggtgcactac tttatgaagg ccaagggcag 1261 cgagaacgat acctctctga tgggattact gcagcttggc gagttctacg aatccattcg 1321 ttggccagcc actctggctt ttctcactgt gcttctgctg ctttgcacgg ttctggtgat 1381 tggcgtagcc aggcggtccc gctgcaccct gatcttcttc agcgtttcgg gtctgttctg 1441 tataataatc tgctggcttt tggcgggcgt ttacctggcc tccagtgtag ctgccgggga 1501 tttctgtatg cgaccacatg actacatgtg ccgccaggtg ggcatgcgga gtccctatgt 1561 tgacttcctg aactgcggta cgccgcgcaa tcggtttatt ttgcgcctga acgaatcacg 1621 ggatctggtg gatcgggcca gggaaagtgt ggaacaaatg cagcggatga gccaagacac 1681 ttatccgcac atcgacattc agcgcaccct gaacgccatg gacagtgatt tggagacgac 1741 tcttcgcaac cttacgacgc tatcagccac tctggacaga cgggccatcg acatgcacta 1801 cgaagaggct ctccgcggac tttgcggtgg cgggttgctg ggtctcagtc tgatgatggt 1861 ggccggcctg ctcacctcct tcctactgac tatcctggtg tatgccgact cgcacgcctg 1921 gatttatttg tccaagcggc ctacgctgga cgctgacaaa tcggagacga cgcccctgtt 1981 ccccgcctcg aatgcgccga gcgccagcat ctcgcccacg gcaccaccaa acacggggac 2041 gatcaacagg acgctgctgc accaccagca gcaggcttcg gcgggcggcg gatcgggcaa 2101 cttgccgggg tctggaggcc tgggcggcgg aggggttgga ggaggaggcc tcggcggagg 2161 cggagccaat ggacacaacg gcgtggggca ttatcgcaat ggaacggccg gcctgagaca 2221 agggttggca tcaccttcat ctcaatcaag ccacacctca tccaccgcca cttacaacaa 2281 ccacaacaac ggcaccacca ccggttacaa caacagccac caacaacaac aacaccacca 2341 caacaacctg tacagcaacc accaccacca ctactacagc aacaacagca cacagcatag 2401 aactaactcc gcggcggggg cggtggtagc ggcggtgggc gtggccagca gcagcggtca 2461 gcgatcgccg tcgccgccgc ccggctacga tttggtgcat ggcacaaggt caggccacca 2521 cacgctgggt cgcctaccat cgcaccatca acagtcggca acatatctgc caggaccaaa 2581 caatggaaag tacgcgacgc ttagcaagca gtgtaagacg ctcgagtcga acgacttcta 2641 ctgagattcg cttgcctgca gttcccatgc aggcagtagc agcaacacag cacagcagca 2701 gcaccagcag caaatgctgg ttcaacagca gagcagcctt atcaatcaga accaggttca 2761 gagtcagagc acgctgaaga acatttttgc atcggccacc ttgccccgct ccacgggcag 2821 ctccatccgc tcggtgcttt ctgtccagac ttccaatgcg ggcatttgcc gctccacggg 2881 caacggattg gacggtggtg gcgacttggt cgacgatcgc gatcccaggg atgtaaccaa 2941 taacagcttc aatcgctttg atcccaaata cataagcatt ggtccgaagg cggtaagggg 3001 tcagaataat aatcttaaca ttatgtccgc cgccggcacg gccaataagt gtgccacgtt 3061 gcggcatgtg ggtcgctacg gtggctcgct taagggtgtg tctgccgtca atgccacgcc 3121 ctctccagcc gccgccgccc cagcagtcca ttcgccaaac ttgaggagcg ccataacgcc 3181 gtcgatagcc accgtttcga aggattactg ccagcagccg gactgcattc cacaggagtt 3241 cctcctccag caacagcagc tccagcaaca acaacaacaa cagctccagc agcaacacca 3301 actccagcaa acgcaggttc aactccaaca acaacctcaa attgtgccac ctgctccgcc 3361 gcaacctgcg cctccgcctc cgcccaaacc aaagatagtt aatacattta cggaaattcc 3421 cggcaccacg ggcgtgggca gctcgtatgc caaggagcag cagcaccaac agcagttgtt 3481 ggcccttcag cagcagagag agcgtgagct acagcaacag cagctccagc aaagggagtt 3541 gcatccaccc accacccaca ttctaccccc ctcggctgtt tacagtatcg agagcagcga 3601 cgtggtgttg cccactgccg cgccgcgtgt gcagcagcgt tcgctaaatc ctgcctccat 3661 tattaaccag ccgctgcccg atattcccac caatcagcaa caggcgaaga tctccgctca 3721 gccgctttgc gccgccagtt tgggtcagta ccgctcgttg cagcggcccc aaacccagaa 3781 gttgcaacct gtggtcatct cctcgccgca gcaaccgccg accttgccgc cgaagaaccg 3841 tcacaaaaat agcaatcgag gtggggccgt cgatgccgtc agcaatgcta atcataatca 3901 tttgcaaacc ttgccgccaa agtcggctag tctgagacaa caacaacagc agcagcagga 3961 gcgagaaaga gaccgggaac gcgagcggga gcgtccgcgg cgggcggaaa ctttggacaa 4021 tgcccgcagt tatatagatc aacagtatcc cagccacctg ataaccacca gcaacatgaa 4081 aaagcaacac tcatatgaca gtagctacca tcaacagcag cagcaggcct tctaccaaag 4141 gcagcacaac aacaactttt cctcgaagca gcagcaacag ttaatgctgg agcaacatca 4201 gcagcagcag caagccttgt tctatagatc tctaaagcga ggggaacgag gaggagctgg 4261 cagcgccacc gcaggagcca ccggtggagg agctgccatt agtaaccaca gcgatctgta 4321 ttcggtgacg gagttgtagg agtgcgcctg ctgcggcggc ggtgtggatg tggtgcgaag 4381 aggcgcttca tccacatcgc tgcacgcagc ggcggctaca caaactcaga gccacaacca 4441 aaacccgacg acgcaatcgc agaatcagga gcctgtcccc ctgccaccca agaagcatcg 4501 ccaacgtgaa agggaacggg agcggaacct agagcgggaa cagcgggaac aagccccctg 4561 caatgccaat ctgtgcgagg agcacgagta cgatgagtac tatccgcagg cctacgaaat 4621 acaagcggct ggaggaggtg gaagcggagg aggagttact actaactctg gatccaagca 4681 tggcaagcaa agtcagcaaa gagcagccac ttttgatgtg gctgatgcca gggactatga 4741 actgaagcga ttgggcaacc ggagatccca gcagcaggcg gctccaagta aaagaaatgg 4801 aggaggagga gcagcgcctg tcagccagga acaccaccgc agccacgatc gcgagcggtc 4861 gcgcagcgat caccgcattg ccagctacgc ctgcgaggag gtgaactcct cagcgctctg 4921 cagtgccggc tccatgagct ccatgctgca gcccgccaat ggaactggtc acaggagcag 4981 cagccaccag cgggatcacc atcagcggga tcagcgggag cgacgcgaga agaccttcaa 5041 ggtatgattt ttagagacgt cataagaatt gtccaatccg cgccaggaca gcagaaacgg 5101 cagctccagg cggcggacgc gttgaggggt aaatggaata gcgaacgtgg cggattctac 5161 agcgagtaca atgaggacaa cctccaggaa ttgaggaagc ttctagaaaa agagagcaaa 5221 aggagcggca ttatcgttgc agcattggaa ttcggagacc ccagcctgtt tttatgttta 5281 gcctaagtcg cgtttactct atctctatct gtgtccatgc ctatcagcgc cctctctttc 5341 acacgcacac cagcaatgaa acgaacacac acacacacat atatgtatac atatatatat 5401 gaatatatat gtatatacat atattgtaat aactgacctc ttctgattga ttccaaactg 5461 cgaaagcagt ttaaaaagtg cttaaatgtc aagggtagcg gtcgatataa tagtattttt 5521 tagtttcgag ccctcttttt tttatttaaa ttaatatatt tttggttaca gattacgcaa 5581 tattgagata tttgatatta ttcatgtgtc attcgtcctg agaaatattt aaaatcccat 5641 ttaaataatt atcatttagg ataaaggtta gctttttagg atatttttaa atttatatgt 5701 tgcttttaaa gttcatagca ctattaattt gaccgctgct gtgcatacag ccgtatacat 5761 caaaacttac aacagttttc tgctctgtgt tgttgcctat tgttatatat atagtagata 5821 actacgatta actttatcat atacattttt gtgacgacta ctcatacgtg tatattttaa 5881 aagcccaagt taagtgaaat ttagttttaa gcgcataact atttatttat tgtaagcctt 5941 gaacccaaaa aatatgacct agaaactagg aaaagcgaag ggccagttgg tgatattttc 6001 gatattcaat attatcgaga attgaatgct gggcttcgct ttttcgttgt tcaaggacat 6061 ttttattttc agaatgagtg tgtgtgcttt tgtttaatta ttaagatatt tgtgcattag 6121 cgatttacgc cgctttttgt ttttttttgt ttgagaatcc gttgcgagaa ccagcaacaa 6181 caaccacagc gacccgtacg taaaattttt gtgacgtcag aaatctaaaa aaaaaacaaa 6241 ataaagaaaa actagcagca acaacaaagc acaatacaag aaaaaactta aatgaaaaac 6301 atttcacaaa acaaaacata atataaactt aaagtctaac attttaaaca agcaaacgac 6361 aacaagaaaa tgaaaagttc ttggatcaag caatataaaa gaaaaaagat taaatcgaaa 6421 agaagccata ccaagttgtt caactattaa acaaaaaaga attcagcaaa gcaaaatcat 6481 aaacaatgac aaatatatac atacataaac attcattaat tacagacata cctattatag 6541 agcaagcata aggaatatta attaatggac aacaacaacc acaaacaatg ttcaggtcaa 6601 taactgcatt taataggaga aaataaaaga agatacccat tgttaaatta aacgaaatgc 6661 tctatttata tacaattaat atacacatga atatacacat gaatatatat aaatatacat 6721 atttaacgaa ttgcaattac ccaaaacaca gaaagcagaa caaccattaa acacaaagta 6781 aaataacaac caaaaaagtt gttagcacag cggcaaacac acacaaaaaa cacattttat 6841 aaaatcgaac ataattatac tacacataat gcaagacaca tgcatgcgat cagttgtggg 6901 caaagtaatt ttagtgccat cagaaattta ataaaatgta cattttatca ttta