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PREDICTED: Drosophila takahashii Frequenin 2 (Frq2), transcript


LOCUS       XM_070218672            3287 bp    mRNA    linear   INV 09-DEC-2024
            variant X4, mRNA.
ACCESSION   XM_070218672
VERSION     XM_070218672.1
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3287
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..3287
                     /gene="Frq2"
                     /note="Frequenin 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 Protein"
                     /db_xref="GeneID:108060997"
     CDS             718..1146
                     /gene="Frq2"
                     /codon_start=1
                     /product="frequenin-2 isoform X2"
                     /protein_id="XP_070074773.1"
                     /db_xref="GeneID:108060997"
                     /translation="MGFIKIYKQFFPDGDPSKFASLVFRVFDENNDGAIEFEEFIRAL
                     SITSRGNLDEKLHWAFRLYDVDNDGYITREEMYNIVDAIYQMVGQQQQTEDENTPQKR
                     VDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSLGGD"
     misc_feature    <787..1101
                     /gene="Frq2"
                     /note="Ca2+-binding protein, EF-hand superfamily [Signal
                     transduction mechanisms]; Region: FRQ1; COG5126"
                     /db_xref="CDD:444056"
     polyA_site      3287
                     /gene="Frq2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 ggctgctggc attcgattgc cattcgcaca agttgcatgt tcgcgactcg attttcggtt
       61 cggtttcctc cttgtttttt ctgttttctc tatttgtgtt ttttcccccc tctgctgttt
      121 ttttttggcc gctcgcgtgc gctgtgcata ttttaaatca cttcctctgc caaccccttt
      181 tttaccaccc acttgaaacc cccttttccc gcagagaaaa aacaaccagt gaattctaat
      241 taagtgtgcg cgctaatgcg ttaaacggtt ctgcaatttg tttttaagcc aaagaccaaa
      301 agcctttgta tttgtatctc accatctcat ccgtatctgt ctctgtttct gtttgagtgg
      361 gaattacatt tataattacg cttaatcagt cgattactgt catcgcaaac acgggcaaac
      421 cgaggaccca ccgcagcgtt cgatgaccac acaaatgagt gccagatcga actgaggcca
      481 aatcgggata agacacgctc cccctgatat aggacacctg tcactgaccc acttggccag
      541 tcagtcagtc agtcagtcgg agggaaagta gtgagaaccc agaggagtat cgacagcggc
      601 atcgacatcg caaacaggag cagccttcgc catgggcaag aagaactcga aattgaagca
      661 ggacaccatc gatcggctga caacggacac atacttcact gaaaaggaaa ttcgtcaatg
      721 ggcttcatca aaatctacaa gcaattcttc cccgacggag accccagcaa gtttgcctcc
      781 ctggtctttc gtgtcttcga tgagaataat gatggcgcca ttgagttcga ggagttcatt
      841 cgggccctgt ccataacatc acgcggtaat ctggacgaga agctgcactg ggccttccgt
      901 ttgtacgatg ttgacaacga tggctacata acccgcgagg agatgtacaa catagtggat
      961 gccatctacc agatggtagg ccagcagcag cagacggagg acgagaatac gccgcagaag
     1021 cgggtggaca agatcttcga tcagatggac aagaaccacg atgatcgcct gacgctcgag
     1081 gagttccgcg agggcagtaa agctgatcca cgtatagtgc aggcgttaag tttaggtggt
     1141 gattaaccgc gggacctgta gttcagattc ggattcggag gggcgggaag ggagcgatag
     1201 tgacggtgat aggagaacac gaatcagcga tccgaagatc gaaccccccc acaagcacgc
     1261 ccaaaaaccc gtgtaccata tgccatttga ccttttttgg gggggggtac ttcgctagcc
     1321 cccatcctcc cgctccccct tacacacaca cacacacact cgtcttaagt gaaattccaa
     1381 ctaatagcaa attatttacg catatttaca tacaaattca attaacaaca gccaagccgc
     1441 ataaagctta aaaacaaaca aaaaatggtt aaaagaaaaa aaatcgcaaa ctaattgaaa
     1501 agaaaagaac accaatttag gtcaaagaaa cgctttttct aaaaacatac tgaatataca
     1561 atatatatag tatatatata tatatatata ttaatgtgcg tgcggcaagt atggttaaat
     1621 ataggtataa aaataaaaga aaacctactt aaattgacta ttaggcactt gctccataaa
     1681 gatcttaggc atttttattg aaatgcttgc caagcaaacg acaaattcaa attgacaact
     1741 atcgataagt gccgttagcc aagcgatagt catagcgata gccagcgaat agttggaatt
     1801 tttttgcgaa acccacaaaa aaacagctac tctacctaaa tatggataat acataatatt
     1861 taaacattac ttatatacgg atacatatac cgatactaat tcgctattgg cttatcgacg
     1921 atgacgtgtc gatcgattgt ttcttttcgc cgggccagca gctctaactg ttgataatcg
     1981 aacgtgttga taatcgaaat ttgaagctac aactatagta agctgaagac tccacacacc
     2041 gacacaccac acacagacct acttactctc aagataatca gataatccgg atataactct
     2101 ggaagtcctg aaaaagttgt ggacacactt gcatgtggat aacgtagcga taaccagcat
     2161 gcggcttaag tactcctctt ggttcctccg tttcttcagt ctccattctc cattcttcaa
     2221 tcttcaacac ccctcattga gcttgacaat caacctgatt ttgctatgga ccattgaatg
     2281 gttctcctca ctccgtcacc caaggatttc atcacaagca ttcgagggac aagaggagta
     2341 gactcttaga agaatctttg atagaacttt aacccttttc tatgtgttta ttgtgcatgc
     2401 cttatcagag caacgataat atcaaattgt gtattcctac ttgtatttgt acttggtttt
     2461 acacctcacc agagcttgaa agtatatcgt atcgtatggg ggaatctaat cccctccaat
     2521 gccttaccaa aaaccaaaac aaaccaaaaa ctatcgcccc aatcatcgac tcactctctc
     2581 tctctatctc tctctctatc gctccatctc tctctgatac acacattatt ctcttttcgg
     2641 ttatcctttt cgtttgatga gctgctcctt cttctatttc gatttcgaaa ggagagccat
     2701 ctaatcacca tgctaaaata atttctatat tttatatgtg gttcagcttt agattgtaaa
     2761 cgaagaactt tgtaagaaga actttgtaaa ggaactttct cctgcagccg gttaactgaa
     2821 ctcacgttta taagaaccca tttaccatta tccctattta ctcacctcgc cctcataatg
     2881 cattagtccc ccaattataa tgttgccttg tagaaaactc cctaggtttg gacttaaatt
     2941 ctgcttcctg cttagaaacc aaaaccaaaa tccaaaatct aaagactttt gctttgtcgc
     3001 tgaggtttca gattggatcg gccctagata atgcttgtct catcctctct gacaccgaaa
     3061 ttccgattca aaatccgatt ccgaggtttc cgccatactg ttttgattgc ccagcacccg
     3121 atacatattt ctagttgtac actcgtattt aaatatatac ctagataatg gccaaataaa
     3181 ttgatataca cacttaaata tatacatata gggagagaaa tatatataaa tatatatata
     3241 cacacacaaa taatgataat tatacataca tctattatta tatagaa