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PREDICTED: Drosophila takahashii Frequenin 2 (Frq2), transcript


LOCUS       XM_070218671            2999 bp    mRNA    linear   INV 09-DEC-2024
            variant X3, mRNA.
ACCESSION   XM_070218671
VERSION     XM_070218671.1
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2999
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..2999
                     /gene="Frq2"
                     /note="Frequenin 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 26 Proteins"
                     /db_xref="GeneID:108060997"
     CDS             295..858
                     /gene="Frq2"
                     /codon_start=1
                     /product="frequenin-2 isoform X1"
                     /protein_id="XP_070074772.1"
                     /db_xref="GeneID:108060997"
                     /translation="MGKKNSKLKQDTIDRLTTDTYFTEKEIRQWHKGFLKDCPNGLLT
                     EQGFIKIYKQFFPDGDPSKFASLVFRVFDENNDGAIEFEEFIRALSITSRGNLDEKLH
                     WAFRLYDVDNDGYITREEMYNIVDAIYQMVGQQQQTEDENTPQKRVDKIFDQMDKNHD
                     DRLTLEEFREGSKADPRIVQALSLGGD"
     misc_feature    <499..813
                     /gene="Frq2"
                     /note="Ca2+-binding protein, EF-hand superfamily [Signal
                     transduction mechanisms]; Region: FRQ1; COG5126"
                     /db_xref="CDD:444056"
     polyA_site      2999
                     /gene="Frq2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 aagtacttca actaatgggt tctaaacaga tcgaagagga gactatttaa ttggactatt
       61 tgaatggaaa ggaaactaaa agggcagcaa ttacggctcg atttagaaag caatcaatat
      121 atatatagat cgaactgagg ccaaatcggg ataagacacg ctccccctga tataggacac
      181 ctgtcactga cccacttggc cagtcagtca gtcagtcagt cggagggaaa gtagtgagaa
      241 cccagaggag tatcgacagc ggcatcgaca tcgcaaacag gagcagcctt cgccatgggc
      301 aagaagaact cgaaattgaa gcaggacacc atcgatcggc tgacaacgga cacatacttc
      361 actgaaaagg aaattcgtca atggcacaag ggctttctca aagactgtcc gaatggcttg
      421 ctgaccgaac aaggcttcat caaaatctac aagcaattct tccccgacgg agaccccagc
      481 aagtttgcct ccctggtctt tcgtgtcttc gatgagaata atgatggcgc cattgagttc
      541 gaggagttca ttcgggccct gtccataaca tcacgcggta atctggacga gaagctgcac
      601 tgggccttcc gtttgtacga tgttgacaac gatggctaca taacccgcga ggagatgtac
      661 aacatagtgg atgccatcta ccagatggta ggccagcagc agcagacgga ggacgagaat
      721 acgccgcaga agcgggtgga caagatcttc gatcagatgg acaagaacca cgatgatcgc
      781 ctgacgctcg aggagttccg cgagggcagt aaagctgatc cacgtatagt gcaggcgtta
      841 agtttaggtg gtgattaacc gcgggacctg tagttcagat tcggattcgg aggggcggga
      901 agggagcgat agtgacggtg ataggagaac acgaatcagc gatccgaaga tcgaaccccc
      961 ccacaagcac gcccaaaaac ccgtgtacca tatgccattt gacctttttt gggggggggt
     1021 acttcgctag cccccatcct cccgctcccc cttacacaca cacacacaca ctcgtcttaa
     1081 gtgaaattcc aactaatagc aaattattta cgcatattta catacaaatt caattaacaa
     1141 cagccaagcc gcataaagct taaaaacaaa caaaaaatgg ttaaaagaaa aaaaatcgca
     1201 aactaattga aaagaaaaga acaccaattt aggtcaaaga aacgcttttt ctaaaaacat
     1261 actgaatata caatatatat agtatatata tatatatata tattaatgtg cgtgcggcaa
     1321 gtatggttaa atataggtat aaaaataaaa gaaaacctac ttaaattgac tattaggcac
     1381 ttgctccata aagatcttag gcatttttat tgaaatgctt gccaagcaaa cgacaaattc
     1441 aaattgacaa ctatcgataa gtgccgttag ccaagcgata gtcatagcga tagccagcga
     1501 atagttggaa tttttttgcg aaacccacaa aaaaacagct actctaccta aatatggata
     1561 atacataata tttaaacatt acttatatac ggatacatat accgatacta attcgctatt
     1621 ggcttatcga cgatgacgtg tcgatcgatt gtttcttttc gccgggccag cagctctaac
     1681 tgttgataat cgaacgtgtt gataatcgaa atttgaagct acaactatag taagctgaag
     1741 actccacaca ccgacacacc acacacagac ctacttactc tcaagataat cagataatcc
     1801 ggatataact ctggaagtcc tgaaaaagtt gtggacacac ttgcatgtgg ataacgtagc
     1861 gataaccagc atgcggctta agtactcctc ttggttcctc cgtttcttca gtctccattc
     1921 tccattcttc aatcttcaac acccctcatt gagcttgaca atcaacctga ttttgctatg
     1981 gaccattgaa tggttctcct cactccgtca cccaaggatt tcatcacaag cattcgaggg
     2041 acaagaggag tagactctta gaagaatctt tgatagaact ttaacccttt tctatgtgtt
     2101 tattgtgcat gccttatcag agcaacgata atatcaaatt gtgtattcct acttgtattt
     2161 gtacttggtt ttacacctca ccagagcttg aaagtatatc gtatcgtatg ggggaatcta
     2221 atcccctcca atgccttacc aaaaaccaaa acaaaccaaa aactatcgcc ccaatcatcg
     2281 actcactctc tctctctatc tctctctcta tcgctccatc tctctctgat acacacatta
     2341 ttctcttttc ggttatcctt ttcgtttgat gagctgctcc ttcttctatt tcgatttcga
     2401 aaggagagcc atctaatcac catgctaaaa taatttctat attttatatg tggttcagct
     2461 ttagattgta aacgaagaac tttgtaagaa gaactttgta aaggaacttt ctcctgcagc
     2521 cggttaactg aactcacgtt tataagaacc catttaccat tatccctatt tactcacctc
     2581 gccctcataa tgcattagtc ccccaattat aatgttgcct tgtagaaaac tccctaggtt
     2641 tggacttaaa ttctgcttcc tgcttagaaa ccaaaaccaa aatccaaaat ctaaagactt
     2701 ttgctttgtc gctgaggttt cagattggat cggccctaga taatgcttgt ctcatcctct
     2761 ctgacaccga aattccgatt caaaatccga ttccgaggtt tccgccatac tgttttgatt
     2821 gcccagcacc cgatacatat ttctagttgt acactcgtat ttaaatatat acctagataa
     2881 tggccaaata aattgatata cacacttaaa tatatacata tagggagaga aatatatata
     2941 aatatatata tacacacaca aataatgata attatacata catctattat tatatagaa