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LOCUS XM_070218666 6055 bp mRNA linear INV 09-DEC-2024 (ovo), transcript variant X4, mRNA. ACCESSION XM_070218666 VERSION XM_070218666.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6055 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6055 /gene="ovo" /note="transcriptional regulator ovo; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins" /db_xref="GeneID:108059196" CDS 771..4823 /gene="ovo" /codon_start=1 /product="transcriptional regulator ovo isoform X4" /protein_id="XP_070074767.1" /db_xref="GeneID:108059196" /translation="MPKIFLIKNRLHQQQQRLLESQNLLQHKSQDDERLVPPLSPSGS GSANSPTPTPTPTAQPPPEPQGQGQQVLGQVPDADQQPLSLTRKRFHHRRHYFGQSRH SLDHLHQNANLNQAQNPAELEVERATGQVQNENFAAELLQRLTPNANTTTTVAAQNNI VRPIVNDLVNNSKATTSVLATKDCAIENSPISIPKKDQREEEEEEQRAAAAAAEEEEE QAQKREQAEVEREAEVEERESKEEEDEEDDEVDVGVEAPRPRFYNTGVVLTQAQRKEY PQDPEPRDLSLAQSSPASPPPPPPNPCHSDSDTDTDSDSDGGCKLIVDEKPPLPAIKP LSLRLRSTPPPADQRPSPPPPRDPAPAVRCSVIQRAPQASSRLAGFLLPPLDQLGPEQ QEPIDYHVPKRRSPSVDSDEELNARRLERARQVREARRRSTILAARVLLAQSQRLNPR LVRSLPGILAAAAGHGRNSSSSSGAAGQGFQSSGFGSQNSGSGSSSSSNQNAGSGAGS PGSGAGGGGGMGGGRDGRGNYGPNSPPTGALPPFYESLKSGQQSTASNNTGQNSSHFN GNPANFLQNAAAAAYIMSAGGGGGGGSSGGGGSGGGGAAGGGGGGSSGGGNGNGYINC GGVAGPNNNLDGNNLLNFASVSNYNDSNSKFHNHHHHHHHHHNNNNNGGQPSMMGHPF YGGNPSAYGIILKDEPDIEYDEAKIDIGTFAQNIIQATMGSSGQFNASAYEDAIMSDL ASSGQCPNGAVDPLQFTATLMLSSQTDHLLEQLSDAVDLSSFLQRSCVDDEESASPRQ DFELVSTPSLTPDSVTPVEQHNANTSQLDALHENLLTQLTHNMARNSSNQQQQQQHQQ QQQQQQHNMQQQHNMQQQHSVQQPPPPSYQHATRGLMMQQQPQHGGYQQQQQAISSSY QQQQSHHQQQQQQHAAAYQQQHNMYAQQQQQQQQHHQQQQHHFHHQQQQQQQQPHHSH HHGHGHDNSNMSLPSPTAAAAAAAAAAAAAAAAAHLQRPMSSSSSSGGTNSSNSSGGS SNSPLLDANAAAAAAAALLDTKPLIQSLGLPPDLQLEFVNGGHGIKNPLAVENAHGGH HRIRNMDCIDDLSKHGHHSQQQQQQQQQQGSPQQQQQQQSMQQSVQQQSVQQSLQQQQ QQQQQQQHHQHHSNSSASSNASSHGSAEALCMGSTSGGVNEDSSSGNNKFVCRVCMKT FSLQRLLNRHMKCHSDIKRYLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCNLCEKSFT QRCSLESHCQKVHSVQHQYAYKERRAKMYVCEECGHTTCEPEVHYLHLKNNHPFSPAL LKFYDKRHFKFTNSQFANNLLGQLPMPVHN" misc_feature 4362..4424 /gene="ovo" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(4377..4379,4383..4385,4389..4391,4395..4400, 4407..4412,4419..4421,4461..4463,4467..4469,4479..4484, 4491..4496,4503..4505,4545..4547,4551..4553,4557..4559, 4563..4568,4575..4580,4590..4592) /gene="ovo" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 4401..4472 /gene="ovo" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:463886" misc_feature 4446..4508 /gene="ovo" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 4482..4559 /gene="ovo" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:463886" misc_feature 4530..4595 /gene="ovo" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" polyA_site 6055 /gene="ovo" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ccggcgttgt gaatgcacgt gttttcgctt caactcacct gggcgaaatc caaaaaccaa 61 agcaaactat aaaacacaca atatacaata tcttaatacg aaaacactgt gttgtgcatc 121 atacaaaata tgatatactg aaatacatca aaacaaaaag atacaaattt ttttcaagta 181 atttttttac aagtgcgcag aacaaaaaaa aaccaagaac caaaaagtgt ttgagaattc 241 aaaataactg gagaaaaaca tatattttct caacacgaat tttttgacaa attataaaaa 301 aaaaacaacg ttttttcgaa gaagaatttt aaaaactcaa aaaaccctgc tgaaaggcac 361 attttttcca agtgtttcaa ggaaaacaga acatcagaca acagaaaatt aaaaaaggaa 421 attaccaaaa taaaatacaa catttccaat tgactatttt gaacttgaag aacagaaaaa 481 cttgcaaaag acatgaagag ggccaaacaa aagttgactt gagctcggct catgacaaaa 541 tcaaaactga aattaaacaa tttttttttt tgaacgcagt ggacgagcgg cgaacaaaca 601 tacacacaca attggattag tgttttgttt atttcggacc cactgtgact gtccctcgtc 661 caccaattgc aacacaaata aaatcgtcgc gtgtcgccgt cgcgtttcgt ttcgtatcgt 721 ttcaatcgct tatcgttaat cgcaaatcgt caatcatccg ataatccatc atgccgaaga 781 ttttcctgat caaaaatcgc ctgcatcagc agcaacagcg tttgcttgaa tcgcaaaact 841 tgctgcagca caaaagccag gatgacgagc gcctggtgcc gcccctcagt ccgagtggga 901 gtggcagcgc caactcgccc acgcccacgc caacgcccac cgcccaacca ccgccggaac 961 cgcaaggtca ggggcaacag gtgctcggac aggtgcccga tgcggatcaa cagccgctga 1021 gcctgacccg caaaagattc caccaccgtc gccactattt cgggcaatcg cgccacagcc 1081 tcgatcatct ccatcagaat gcgaacctta atcaagcaca aaatcctgcg gaattggaag 1141 tcgagcgcgc cactggccaa gttcaaaatg aaaactttgc ggccgaatta ctgcagcgtt 1201 taaccccaaa cgccaacacc accaccactg tagctgcaca aaataatatt gttaggccaa 1261 tagttaatga tttggttaat aatagcaaag ccaccacctc cgttttagcc acaaaagact 1321 gcgcaattga aaactcccca attagcatac caaaaaaaga tcagcgagaa gaggaagaag 1381 aagagcagcg ggcagcagca gcagcagcag aagaagaaga agagcaggct caaaagagag 1441 agcaagcgga ggtagagaga gaggcggagg tagaagagag agagagcaaa gaggaagagg 1501 acgaggagga cgacgaagtg gatgtgggcg tagaggcgcc acgcccacgc ttctacaata 1561 ccggcgtggt tttaacccag gctcagcgca aggaatatcc gcaggatccc gagccccgtg 1621 acctttcgct cgcccaatcc tcgccagctt ccccgccgcc gccgccgcca aatccctgtc 1681 actccgattc cgataccgat accgattccg attcggatgg cggctgcaag ctaatcgtcg 1741 acgagaagcc cccattgccg gcgatcaagc cgctttccct gcgcctgcgc agcactccgc 1801 cgccagcgga tcagcgtccc agtccgccgc ctccgcgcga cccggcgccc gccgtccgct 1861 gctcggtgat ccagcgggca ccgcaggcca gcagccggct ggccggattc ctcctgccgc 1921 cgctcgatca gctcggtccc gagcagcagg agcccatcga ttaccacgtc ccgaagcggc 1981 ggagtccctc cgtcgactcc gatgaggagc tgaacgcccg ccggctggag agagcacgcc 2041 aggtgcgcga ggcgcgtcgc aggagcacca ttttggccgc tcgcgtcctc ttggcccagt 2101 cgcagaggct caatccgcgc ttggtgcgct cgctgccggg aattctagcc gccgctgcgg 2161 gtcacggacg caatagtagc agctccagcg gtgccgccgg ccagggcttc caatcctccg 2221 gatttggcag ccagaacagc ggcagtggtt cgtctagttc gtccaatcag aacgccggga 2281 gcggtgctgg atcaccggga tcgggggccg gaggaggtgg tggcatgggc ggcggtcgcg 2341 acggccgagg gaactacgga cccaattcac cgcccacggg ggcactgcct ccgttctacg 2401 agagcctcaa gagcggccag cagagcacgg cgagcaataa tacgggtcag aatagctcgc 2461 atttcaacgg gaatccagcg aattttctgc aaaacgcagc agcggctgct tacataatgt 2521 cagcaggagg aggaggtggt ggaggatctt ccggaggagg tggctccgga ggaggaggag 2581 ctgccggcgg aggaggaggc ggctccagtg gtggtggtaa cggcaatggc tacatcaatt 2641 gtggcggcgt tgctggtcca aacaataatc tcgacggtaa taacctattg aacttcgcca 2701 gtgtttctaa ctataacgac tccaattcca aattccataa tcaccatcat catcatcatc 2761 atcatcacaa caacaataat aatggtggtc aaccatccat gatgggtcat cccttttacg 2821 gcggcaatcc ctcagcctat ggaatcatac tgaaggatga gccggacatt gagtacgacg 2881 aggccaagat cgacatagga acctttgcgc agaacatcat ccaggcgacg atgggcagct 2941 cgggtcagtt caatgccagc gcctatgaag atgccatcat gtcggatttg gccagctccg 3001 gtcagtgtcc caatggcgcc gtcgatccgc tgcagtttac agcgactttg atgctgagtt 3061 cgcagacgga tcatctgctg gagcagctgt ccgatgccgt ggatctcagc tccttcctgc 3121 agcgcagctg tgtggacgac gaggagtccg cgagtccaag gcaggacttt gagctggtgt 3181 ccacgccctc gctgacgccg gactcggtga cgccggtgga gcagcacaat gccaacacct 3241 cgcagttgga tgccctgcac gagaacctct tgacgcagct gacccacaat atggccagga 3301 acagcagcaa tcagcagcag cagcagcagc atcagcagca gcaacagcag cagcagcata 3361 atatgcagca gcaacataat atgcagcagc aacatagcgt gcaacagccg ccaccgccct 3421 cgtatcagca tgccacgcgc ggcttgatga tgcaacagca gccgcagcac ggcggctacc 3481 agcagcagca gcaggccatc agcagcagct accagcagca acagtcgcac caccagcagc 3541 agcagcagca acatgccgct gcctaccagc agcagcacaa tatgtatgcc cagcagcagc 3601 agcagcagca gcaacatcac cagcagcaac agcatcactt ccaccaccag caacagcagc 3661 agcaacagca gccgcatcac tcgcatcatc atggccatgg tcatgacaac agcaacatgt 3721 cgctgccctc gccaactgcg gctgctgcgg cggctgctgc tgctgctgcg gctgctgcag 3781 cggccgctca cctacagcga ccgatgagca gcagcagcag ctccggcggc accaacagca 3841 gcaacagcag cggcggcagc agcaatagtc cgctcctaga tgcaaatgct gccgcggcag 3901 cagcggccgc cctgctggac accaagccgc tcatccaaag cttgggcctg ccgccagatc 3961 tgcagctgga gtttgtgaac ggcggccatg gcattaagaa cccgctggcc gtggagaatg 4021 cccatggtgg ccatcaccga atacgcaaca tggattgcat tgatgatctc agcaagcatg 4081 gccaccactc gcagcagcag cagcaacagc agcagcagca gggctcgcca cagcagcagc 4141 agcaacagca gagcatgcag caatcggtgc aacagcagtc ggtgcagcaa tccctccagc 4201 agcagcaaca gcaacagcag cagcagcagc accatcagca ccacagcaac agcagcgcca 4261 gcagcaatgc cagcagtcac ggctccgccg aagccctttg catgggctca accagcggcg 4321 gagttaacga ggactcctcc tcgggcaaca acaagttcgt gtgccgcgtc tgcatgaaga 4381 ccttctcgct gcagcgactg ctcaatcggc acatgaagtg ccactcggac atcaagcgat 4441 atctgtgcac gttctgcggc aagggattca acgacacctt cgacctcaag cggcacacgc 4501 gcacccacac gggcgtgcgg ccgtacaagt gcaatctgtg cgagaagagc ttcacgcagc 4561 gctgctcttt ggagtcgcac tgccagaagg tgcacagcgt tcagcaccag tacgcctaca 4621 aggagcgcag ggccaagatg tacgtctgcg aggagtgcgg ccacaccacc tgcgaaccgg 4681 aggtgcacta tctgcatttg aagaacaacc atcccttctc gccggcgctg ctcaagttct 4741 acgacaagcg gcacttcaag ttcaccaact cgcagttcgc caacaatctg cttggccagc 4801 tgcccatgcc ggtccataat tagtaaatgg atgggattga atttagatat aggaacttag 4861 gcaacaacca acattgtgac tttgaagttt tttgaaaact gaaaactgcc cccccgcgga 4921 ggaaacggaa tttttggaga ttatgcttat tatgtatatt tttgcctagc cctaagttta 4981 attagttata gctgtagaat cacgctactc cactactcac tttgctgtgc aaatctgtct 5041 cacttgaaac ttttgagcct tttgtttata gttaatcttg aattttccat ttaatgcaat 5101 tatttttttt tcggtttacc gcttcttagt caaaaaatta tcgtagagct aagaaatgtt 5161 ttgaagaagc tttgagcaac acacaaaaat tatggattat caatcgttta taggtatatt 5221 acaagaaaat atatataaaa aagatatagc tgtaagatgt taagagctaa caaccgaaca 5281 agctgcaaac gtttgcattt atttgtcttc aacaaaagca aaaacaaaaa acggaataga 5341 tcgcgtagaa aaatgagcaa ggattaacat atttacacac caccaacgca taaatattta 5401 ttacttaatc acaaaccaca ttgcaaagag gcaaaacatt cgaataaatt aggctaggat 5461 acataaaaca taaaacaaaa cgtaaactaa agctgttcat aaatgaagtc aaagccccaa 5521 caatatccaa catgttttgg aagaatcgtt gcgataagat aattctttga atgtatatct 5581 tgcattaaac ttagctttta ggcaatacca ccaattgtac tgatcttaaa tgaacaaaca 5641 ctaagaaaaa catacatttt atatatataa accgatatcc gatggtatat tcgataagcc 5701 ttagtcctaa ggtaaaatta ctcttgaatc tggattcgaa tttgagtttg aatttgataa 5761 caattgaggg aaactatgat ttcccatgcg taacattaaa ctgcattatt atttctgttt 5821 tagcttaacg cttttttttt cttttaattt gttgtaagca acaacgggtt ttttgtgcaa 5881 tcgcttggtg ttggttaaat ggaattaagg atgatgacat gacaaatcgg atttaagaat 5941 cgtactttaa ggtttatgct gtgggggctg tgcattgtgg cgccacgccc accgcccgct 6001 gtacagcccc caaagaagaa ggagtagaat acggcggata tcgaaacttg gcaaa