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LOCUS XM_070218664 6472 bp mRNA linear INV 09-DEC-2024 (ovo), transcript variant X2, mRNA. ACCESSION XM_070218664 VERSION XM_070218664.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6472 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6472 /gene="ovo" /note="transcriptional regulator ovo; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108059196" CDS 771..5240 /gene="ovo" /codon_start=1 /product="transcriptional regulator ovo isoform X2" /protein_id="XP_070074765.1" /db_xref="GeneID:108059196" /translation="MPKIFLIKNRLHQQQQRLLESQNLLQHKSQDDERLVPPLSPSGS GSANSPTPTPTPTAQPPPEPQGQGQQVLGQVPDADQQPLSLTRKRFHHRRHYFGQSRH SLDHLHQNANLNQAQNPAELEVERATGQVQNENFAAELLQRLTPNANTTTTVAAQNNI VRPIVNDLVNNSKATTSVLATKDCAIENSPISIPKKDQREEEEEEQRAAAAAAEEEEE QAQKREQAEVEREAEVEERESKEEEDEEDDEVDVGVEAPRPRFYNTGVVLTQAQRKEY PQDPEPRDLSLAQSSPASPPPPPPNPCHSDSDTDTDSDSDGGCKLIVDEKPPLPAIKP LSLRLRSTPPPADQRPSPPPPRDPAPAVRCSVIQRAPQASSRLAGFLLPPLDQLGPEQ QEPIDYHVPKRRSPSVDSDEELNARRLERARQVREARRRSTILAARVLLAQSQRLNPR LVRSLPGILAAAAGHGRNSSSSSGAAGQGFQSSGFGSQNSGSGSSSSSNQNAGSGAGS PGSGAGGGGGMGGGRDGRGNYGPNSPPTGALPPFYESLKSGQQSTASNNTGQNSSHFN GNPANFLQNAAAAAYIMSAGGGGGGGSSGGGGSGGGGAAGGGGGGSSGGGNGNGYINC GGVAGPNNNLDGNNLLNFASVSNYNDSNSKFHNHHHHHHHHHNNNNNGGQPSMMGHPF YGGNPSAYGIILKDEPDIEYDEAKIDIGTFAQNIIQATMGSSGQFNASAYEDAIMSDL ASSGQCPNGAVDPLQFTATLMLSSQTDHLLEQLSDAVDLSSFLQRSCVDDEESASPRQ DFELVSTPSLTPDSVTPVEQHNANTSQLDALHENLLTQLTHNMARNSSNQQQQQQHQQ QQQQQQHNMQQQHNMQQQHSVQQPPPPSYQHATRGLMMQQQPQHGGYQQQQQAISSSY QQQQSHHQQQQQQHAAAYQQQHNMYAQQQQQQQQHHQQQQHHFHHQQQQQQQQPHHSH HHGHGHDNSNMSLPSPTAAAAAAAAAAAAAAAAAHLQRPMSSSSSSGGTNSSNSSGGS SNSPLLDANAAAAAAAALLDTKPLIQSGKQITLMKTTTYTEFVEMVSMDVLVKPEPLV ETKPEVTEVTLEEETVVPVAIPPPPPPPAAAATSGRKLRGRAKAVAYGSTMITLISTL KSSAEVPATKTVHRTTLRSLASAAAATAAGLLAPSPTVSVLNESKVLQRRLGLPPDLQ LEFVNGGHGIKNPLAVENAHGGHHRIRNMDCIDDLSKHGHHSQQQQQQQQQQGSPQQQ QQQQSMQQSVQQQSVQQSLQQQQQQQQQQQHHQHHSNSSASSNASSHGSAEALCMGST SGGVNEDSSSGNNKFVCRVCMKTFSLQRLLNRHMKCHSDIKRYLCTFCGKGFNDTFDL KRHTRTHTGVRPYKCNLCEKSFTQRCSLESHCQKVHSVQHQYAYKERRAKMYVCEECG HTTCEPEVHYLHLKNNHPFSPALLKFYDKRHFKFTNSQFANNLLGQLPMPVHN" misc_feature 4779..4841 /gene="ovo" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(4794..4796,4800..4802,4806..4808,4812..4817, 4824..4829,4836..4838,4878..4880,4884..4886,4896..4901, 4908..4913,4920..4922,4962..4964,4968..4970,4974..4976, 4980..4985,4992..4997,5007..5009) /gene="ovo" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 4818..4889 /gene="ovo" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:463886" misc_feature 4863..4925 /gene="ovo" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 4899..4976 /gene="ovo" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:463886" misc_feature 4947..5012 /gene="ovo" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" polyA_site 6472 /gene="ovo" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ccggcgttgt gaatgcacgt gttttcgctt caactcacct gggcgaaatc caaaaaccaa 61 agcaaactat aaaacacaca atatacaata tcttaatacg aaaacactgt gttgtgcatc 121 atacaaaata tgatatactg aaatacatca aaacaaaaag atacaaattt ttttcaagta 181 atttttttac aagtgcgcag aacaaaaaaa aaccaagaac caaaaagtgt ttgagaattc 241 aaaataactg gagaaaaaca tatattttct caacacgaat tttttgacaa attataaaaa 301 aaaaacaacg ttttttcgaa gaagaatttt aaaaactcaa aaaaccctgc tgaaaggcac 361 attttttcca agtgtttcaa ggaaaacaga acatcagaca acagaaaatt aaaaaaggaa 421 attaccaaaa taaaatacaa catttccaat tgactatttt gaacttgaag aacagaaaaa 481 cttgcaaaag acatgaagag ggccaaacaa aagttgactt gagctcggct catgacaaaa 541 tcaaaactga aattaaacaa tttttttttt tgaacgcagt ggacgagcgg cgaacaaaca 601 tacacacaca attggattag tgttttgttt atttcggacc cactgtgact gtccctcgtc 661 caccaattgc aacacaaata aaatcgtcgc gtgtcgccgt cgcgtttcgt ttcgtatcgt 721 ttcaatcgct tatcgttaat cgcaaatcgt caatcatccg ataatccatc atgccgaaga 781 ttttcctgat caaaaatcgc ctgcatcagc agcaacagcg tttgcttgaa tcgcaaaact 841 tgctgcagca caaaagccag gatgacgagc gcctggtgcc gcccctcagt ccgagtggga 901 gtggcagcgc caactcgccc acgcccacgc caacgcccac cgcccaacca ccgccggaac 961 cgcaaggtca ggggcaacag gtgctcggac aggtgcccga tgcggatcaa cagccgctga 1021 gcctgacccg caaaagattc caccaccgtc gccactattt cgggcaatcg cgccacagcc 1081 tcgatcatct ccatcagaat gcgaacctta atcaagcaca aaatcctgcg gaattggaag 1141 tcgagcgcgc cactggccaa gttcaaaatg aaaactttgc ggccgaatta ctgcagcgtt 1201 taaccccaaa cgccaacacc accaccactg tagctgcaca aaataatatt gttaggccaa 1261 tagttaatga tttggttaat aatagcaaag ccaccacctc cgttttagcc acaaaagact 1321 gcgcaattga aaactcccca attagcatac caaaaaaaga tcagcgagaa gaggaagaag 1381 aagagcagcg ggcagcagca gcagcagcag aagaagaaga agagcaggct caaaagagag 1441 agcaagcgga ggtagagaga gaggcggagg tagaagagag agagagcaaa gaggaagagg 1501 acgaggagga cgacgaagtg gatgtgggcg tagaggcgcc acgcccacgc ttctacaata 1561 ccggcgtggt tttaacccag gctcagcgca aggaatatcc gcaggatccc gagccccgtg 1621 acctttcgct cgcccaatcc tcgccagctt ccccgccgcc gccgccgcca aatccctgtc 1681 actccgattc cgataccgat accgattccg attcggatgg cggctgcaag ctaatcgtcg 1741 acgagaagcc cccattgccg gcgatcaagc cgctttccct gcgcctgcgc agcactccgc 1801 cgccagcgga tcagcgtccc agtccgccgc ctccgcgcga cccggcgccc gccgtccgct 1861 gctcggtgat ccagcgggca ccgcaggcca gcagccggct ggccggattc ctcctgccgc 1921 cgctcgatca gctcggtccc gagcagcagg agcccatcga ttaccacgtc ccgaagcggc 1981 ggagtccctc cgtcgactcc gatgaggagc tgaacgcccg ccggctggag agagcacgcc 2041 aggtgcgcga ggcgcgtcgc aggagcacca ttttggccgc tcgcgtcctc ttggcccagt 2101 cgcagaggct caatccgcgc ttggtgcgct cgctgccggg aattctagcc gccgctgcgg 2161 gtcacggacg caatagtagc agctccagcg gtgccgccgg ccagggcttc caatcctccg 2221 gatttggcag ccagaacagc ggcagtggtt cgtctagttc gtccaatcag aacgccggga 2281 gcggtgctgg atcaccggga tcgggggccg gaggaggtgg tggcatgggc ggcggtcgcg 2341 acggccgagg gaactacgga cccaattcac cgcccacggg ggcactgcct ccgttctacg 2401 agagcctcaa gagcggccag cagagcacgg cgagcaataa tacgggtcag aatagctcgc 2461 atttcaacgg gaatccagcg aattttctgc aaaacgcagc agcggctgct tacataatgt 2521 cagcaggagg aggaggtggt ggaggatctt ccggaggagg tggctccgga ggaggaggag 2581 ctgccggcgg aggaggaggc ggctccagtg gtggtggtaa cggcaatggc tacatcaatt 2641 gtggcggcgt tgctggtcca aacaataatc tcgacggtaa taacctattg aacttcgcca 2701 gtgtttctaa ctataacgac tccaattcca aattccataa tcaccatcat catcatcatc 2761 atcatcacaa caacaataat aatggtggtc aaccatccat gatgggtcat cccttttacg 2821 gcggcaatcc ctcagcctat ggaatcatac tgaaggatga gccggacatt gagtacgacg 2881 aggccaagat cgacatagga acctttgcgc agaacatcat ccaggcgacg atgggcagct 2941 cgggtcagtt caatgccagc gcctatgaag atgccatcat gtcggatttg gccagctccg 3001 gtcagtgtcc caatggcgcc gtcgatccgc tgcagtttac agcgactttg atgctgagtt 3061 cgcagacgga tcatctgctg gagcagctgt ccgatgccgt ggatctcagc tccttcctgc 3121 agcgcagctg tgtggacgac gaggagtccg cgagtccaag gcaggacttt gagctggtgt 3181 ccacgccctc gctgacgccg gactcggtga cgccggtgga gcagcacaat gccaacacct 3241 cgcagttgga tgccctgcac gagaacctct tgacgcagct gacccacaat atggccagga 3301 acagcagcaa tcagcagcag cagcagcagc atcagcagca gcaacagcag cagcagcata 3361 atatgcagca gcaacataat atgcagcagc aacatagcgt gcaacagccg ccaccgccct 3421 cgtatcagca tgccacgcgc ggcttgatga tgcaacagca gccgcagcac ggcggctacc 3481 agcagcagca gcaggccatc agcagcagct accagcagca acagtcgcac caccagcagc 3541 agcagcagca acatgccgct gcctaccagc agcagcacaa tatgtatgcc cagcagcagc 3601 agcagcagca gcaacatcac cagcagcaac agcatcactt ccaccaccag caacagcagc 3661 agcaacagca gccgcatcac tcgcatcatc atggccatgg tcatgacaac agcaacatgt 3721 cgctgccctc gccaactgcg gctgctgcgg cggctgctgc tgctgctgcg gctgctgcag 3781 cggccgctca cctacagcga ccgatgagca gcagcagcag ctccggcggc accaacagca 3841 gcaacagcag cggcggcagc agcaatagtc cgctcctaga tgcaaatgct gccgcggcag 3901 cagcggccgc cctgctggac accaagccgc tcatccaaag cgggaagcaa atcaccctga 3961 tgaagaccac cacgtacacg gagttcgtgg agatggtgtc gatggatgtg ctggtcaagc 4021 cggagccttt ggtggagacc aaaccggagg tgactgaggt gactttggag gaggagacag 4081 tggtaccggt ggcaatacca ccgcctccgc cgccgccagc agcagcagca acttcgggca 4141 gaaagctgcg cggaagggcc aaggcggtgg cctatggctc caccatgatc acgctgatct 4201 ccacgctgaa atcctcggcg gaggtgccgg ccaccaagac ggtgcatcgc accaccttgc 4261 gatcgctggc ctcggcggcg gcggccacgg cagcgggact gctggcgccg tcgcccaccg 4321 tttccgtttt gaatgagagc aaagtcctgc agcggcgctt gggcctgccg ccagatctgc 4381 agctggagtt tgtgaacggc ggccatggca ttaagaaccc gctggccgtg gagaatgccc 4441 atggtggcca tcaccgaata cgcaacatgg attgcattga tgatctcagc aagcatggcc 4501 accactcgca gcagcagcag caacagcagc agcagcaggg ctcgccacag cagcagcagc 4561 aacagcagag catgcagcaa tcggtgcaac agcagtcggt gcagcaatcc ctccagcagc 4621 agcaacagca acagcagcag cagcagcacc atcagcacca cagcaacagc agcgccagca 4681 gcaatgccag cagtcacggc tccgccgaag ccctttgcat gggctcaacc agcggcggag 4741 ttaacgagga ctcctcctcg ggcaacaaca agttcgtgtg ccgcgtctgc atgaagacct 4801 tctcgctgca gcgactgctc aatcggcaca tgaagtgcca ctcggacatc aagcgatatc 4861 tgtgcacgtt ctgcggcaag ggattcaacg acaccttcga cctcaagcgg cacacgcgca 4921 cccacacggg cgtgcggccg tacaagtgca atctgtgcga gaagagcttc acgcagcgct 4981 gctctttgga gtcgcactgc cagaaggtgc acagcgttca gcaccagtac gcctacaagg 5041 agcgcagggc caagatgtac gtctgcgagg agtgcggcca caccacctgc gaaccggagg 5101 tgcactatct gcatttgaag aacaaccatc ccttctcgcc ggcgctgctc aagttctacg 5161 acaagcggca cttcaagttc accaactcgc agttcgccaa caatctgctt ggccagctgc 5221 ccatgccggt ccataattag taaatggatg ggattgaatt tagatatagg aacttaggca 5281 acaaccaaca ttgtgacttt gaagtttttt gaaaactgaa aactgccccc ccgcggagga 5341 aacggaattt ttggagatta tgcttattat gtatattttt gcctagccct aagtttaatt 5401 agttatagct gtagaatcac gctactccac tactcacttt gctgtgcaaa tctgtctcac 5461 ttgaaacttt tgagcctttt gtttatagtt aatcttgaat tttccattta atgcaattat 5521 ttttttttcg gtttaccgct tcttagtcaa aaaattatcg tagagctaag aaatgttttg 5581 aagaagcttt gagcaacaca caaaaattat ggattatcaa tcgtttatag gtatattaca 5641 agaaaatata tataaaaaag atatagctgt aagatgttaa gagctaacaa ccgaacaagc 5701 tgcaaacgtt tgcatttatt tgtcttcaac aaaagcaaaa acaaaaaacg gaatagatcg 5761 cgtagaaaaa tgagcaagga ttaacatatt tacacaccac caacgcataa atatttatta 5821 cttaatcaca aaccacattg caaagaggca aaacattcga ataaattagg ctaggataca 5881 taaaacataa aacaaaacgt aaactaaagc tgttcataaa tgaagtcaaa gccccaacaa 5941 tatccaacat gttttggaag aatcgttgcg ataagataat tctttgaatg tatatcttgc 6001 attaaactta gcttttaggc aataccacca attgtactga tcttaaatga acaaacacta 6061 agaaaaacat acattttata tatataaacc gatatccgat ggtatattcg ataagcctta 6121 gtcctaaggt aaaattactc ttgaatctgg attcgaattt gagtttgaat ttgataacaa 6181 ttgagggaaa ctatgatttc ccatgcgtaa cattaaactg cattattatt tctgttttag 6241 cttaacgctt tttttttctt ttaatttgtt gtaagcaaca acgggttttt tgtgcaatcg 6301 cttggtgttg gttaaatgga attaaggatg atgacatgac aaatcggatt taagaatcgt 6361 actttaaggt ttatgctgtg ggggctgtgc attgtggcgc cacgcccacc gcccgctgta 6421 cagcccccaa agaagaagga gtagaatacg gcggatatcg aaacttggca aa