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LOCUS XM_070218657 2521 bp mRNA linear INV 09-DEC-2024 (Rhp), transcript variant X4, mRNA. ACCESSION XM_070218657 VERSION XM_070218657.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2521 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2521 /gene="Rhp" /note="GTP-Rho-binding protein rhophilin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056740" CDS 118..2295 /gene="Rhp" /codon_start=1 /product="rhophilin-2-A isoform X1" /protein_id="XP_070074758.1" /db_xref="GeneID:108056740" /translation="MFNLGAMDGKTDELAQRAGKNEENEDDEKLNELSFCFVRGSDPR AATCRSKLQNRRCKLNKEINKELRLRAGAENLYKATSNRKLRDTVALELSFVNSNLQL LKEQLAELNSSVEIYQSESHNGIMPMIPLGLKETKEINFMEPFSDFILEHYSEEPSMY IDAIADMTDTRQASKTPSRDALGVALLFRYYNTLYYVERRFFPPDRNLGVYFEWYDSL TGVPSCQRTIAFEKACTLFNLGGIYTQIGARHDRTTERGLDLAVDSFLRAAGIFRHIY DTFTNAPSMDLKPQVLDVLVSLMLSQARECLFEKLQLQIEAIGLSEFSCSDSQSFRDL AGEAAQISHEYNEMHKNIQANDTHTYLPECWAGLVPVKAELYKAFAHFYKARSIDATD EIKVSRNQDKLSTESFIGNSQEVESNFGTSEEAATSNANKLAHLKEALASIEEAQRLQ RMCRYLKNKSSLTEVMKEVHSKSQEELDRFRLQASANNIEEGDLLERVVEASSKFTLS LTGPDFTSHKVKDPFKRLGPIAIFSARRHWTAPRCVRLQKGSSSYHNVPANNRCPLDN DDEEHDGGFNLYKEEFENFGFHVRGDAPVIIAHVEINSLADLGGIKEGDFIVEIAGMD VKWYSHQQVVQLIQSCGSALELRVITPMDRNYLKPLSSKGSLSTLSAASSSGISSGFP SPTSIAAKPKLHLKTSSSSRAAGSVSSSSWNPFRRTPSLAKIF" misc_feature 235..489 /gene="Rhp" /note="Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Rhophilin-1; Region: HR1_Rhophilin-1; cd11633" /db_xref="CDD:212023" misc_feature order(286..288,295..297,304..309,316..321,325..330, 337..342,346..351,394..399,406..408,415..420,427..429) /gene="Rhp" /note="putative Rho binding site 1 [polypeptide binding]; other site" /db_xref="CDD:212023" misc_feature order(310..315,319..324,331..336,340..345,352..357, 379..384,388..390) /gene="Rhp" /note="putative Rho binding site 2 [polypeptide binding]; other site" /db_xref="CDD:212023" misc_feature 499..1686 /gene="Rhp" /note="Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains; Region: BRO1_Rhophilin; cd09244" /db_xref="CDD:185767" misc_feature order(844..846,853..855,892..894,901..906,1036..1038, 1045..1050,1105..1107,1114..1119,1636..1638,1642..1644, 1648..1650,1654..1656) /gene="Rhp" /note="putative ESCRT-III binding site; other site" /db_xref="CDD:185767" misc_feature 1870..2064 /gene="Rhp" /note="canonical PDZ domain; Region: PDZ_canonical; cl49608" /db_xref="CDD:483948" misc_feature order(1870..1887,1909..1911,1918..1920,2005..2007, 2017..2019,2026..2031) /gene="Rhp" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467153" polyA_site 2521 /gene="Rhp" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtcacactac cgagcgaaat aaccagtttt agactttacg gtggttcgga aactcgtacc 61 tggcgctata gttgtcgaaa gtataaacac ttaagaggac tcccatcgga tctccgaatg 121 tttaatcttg gagccatgga tgggaaaacc gatgaactgg cccagagagc tgggaaaaat 181 gaggagaacg aggatgacga gaagctgaat gagttatcct tctgttttgt tcggggttcc 241 gatcccagag cggcaacatg tcgtagcaaa ctgcaaaaca ggcggtgcaa gttgaacaaa 301 gagattaaca aggaactccg cttaagagct ggtgctgaga atctatataa ggccacatcc 361 aaccgaaagt tacgagacac agttgccttg gaactgagct ttgtcaattc aaatttgcaa 421 ttgctgaagg agcagctggc tgagttgaat tcctcggtgg aaatctatca gagtgaaagt 481 cacaatggca ttatgcccat gataccactg ggcttgaagg aaaccaagga gattaacttt 541 atggaaccgt tttccgactt cattttggaa cactacagcg aagagccctc gatgtacata 601 gatgccatag cggatatgac agatacgaga caggcctcca aaacgccatc acgtgacgcc 661 ctcggggtgg cgctactttt ccgctactac aacacactgt actacgtgga gcgtcgcttc 721 tttccgcccg atcgcaattt gggtgtctac ttcgagtggt acgactccct gacgggcgtt 781 ccctcgtgcc agcgcaccat tgccttcgag aaggcctgca ccctgttcaa tctggggggg 841 atatacaccc agatcggggc ccggcatgat cgcaccaccg aaaggggtct cgatttggcc 901 gtggatagct ttctccgggc agcagggatc ttccgtcaca tctacgatac attcacgaat 961 gccccttcga tggatctgaa gccgcaggtc ctcgatgtcc ttgtctcgct gatgctctcc 1021 caggcacgcg agtgtctctt cgagaagttg cagctgcaga tcgaggcgat aggtctctcc 1081 gaattcagtt gctccgattc gcagtcgttt cgggatttgg ccggagaggc tgcccagata 1141 tcgcacgagt acaatgagat gcacaagaat atccaggcga acgatacgca cacatatctg 1201 ccggaatgtt gggctggtct ggtgccagtc aaggcggaac tctacaaagc ttttgcccat 1261 ttctacaagg cacgcagcat agatgcgacg gacgagatca aggtgtccag gaaccaggac 1321 aaattatcca cggaatcctt tatcggcaac tcccaggagg tggagtccaa ttttggcacc 1381 agcgaggagg ccgccacttc caacgccaac aagctggctc atctgaagga ggcactggcc 1441 agcatcgagg aggcccagcg attgcagcga atgtgtcggt acctaaagaa caagtcatcg 1501 ctcactgagg tcatgaagga ggtgcattcc aagtcgcagg aggagttgga taggttcaga 1561 cttcaggctt cggcgaataa tatcgaagag ggcgaccttc tggagcgagt cgttgaagct 1621 tcctcaaagt tcacgttatc cctgacggga cccgatttca cctcgcacaa ggtgaaggat 1681 cccttcaagc gcctcgggcc cattgcaatc ttctcggcgc gacgccactg gactgcgccg 1741 cgatgtgtgc gcctgcagaa gggttcatcc tcgtaccaca acgtgcccgc caataacaga 1801 tgtccgctgg acaacgacga cgaggagcac gacggcggct tcaatctgta caaggaggag 1861 ttcgagaact ttggcttcca tgtgcgcggc gatgcgccgg tcataattgc ccacgttgag 1921 atcaattcgc tggcagacct gggcggcatc aaggaggggg acttcatagt cgagatagct 1981 ggcatggatg tcaagtggta ttcgcatcag caggtcgtcc agctcatcca gtcgtgcggc 2041 tccgcactcg agctgcgggt cataacgccc atggatcgca actatctgaa gcctctgtcg 2101 tcgaagggct cgctgtccac gctctcggcg gccagctcat cgggcatctc ctccggcttt 2161 cccagtccca cgagcattgc ggccaagccc aagcttcatc tgaaaacgtc gtccagttcg 2221 cgagccgccg gcagcgtttc gtccagttcg tggaatccct ttcggcgaac tccgagctta 2281 gctaaaatat tttaggtagc gaccagtttt actttgtgtt ttcttggcca tttcagttta 2341 gagctaatgt taggcaataa acttaattat tttttacaaa cttaatcatg catcacgttc 2401 gttaaattat aaacttattt aattttcctc ctcctcttct cccaccaaga aataatctgc 2461 taaataaaaa ttaactctaa tcattttatt ttttgtaaat aaatcaaaat aattaccttc 2521 a