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LOCUS XM_070218656 2617 bp mRNA linear INV 09-DEC-2024 (Rhp), transcript variant X3, mRNA. ACCESSION XM_070218656 VERSION XM_070218656.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2617 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2617 /gene="Rhp" /note="GTP-Rho-binding protein rhophilin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056740" CDS 214..2391 /gene="Rhp" /codon_start=1 /product="rhophilin-2-A isoform X1" /protein_id="XP_070074757.1" /db_xref="GeneID:108056740" /translation="MFNLGAMDGKTDELAQRAGKNEENEDDEKLNELSFCFVRGSDPR AATCRSKLQNRRCKLNKEINKELRLRAGAENLYKATSNRKLRDTVALELSFVNSNLQL LKEQLAELNSSVEIYQSESHNGIMPMIPLGLKETKEINFMEPFSDFILEHYSEEPSMY IDAIADMTDTRQASKTPSRDALGVALLFRYYNTLYYVERRFFPPDRNLGVYFEWYDSL TGVPSCQRTIAFEKACTLFNLGGIYTQIGARHDRTTERGLDLAVDSFLRAAGIFRHIY DTFTNAPSMDLKPQVLDVLVSLMLSQARECLFEKLQLQIEAIGLSEFSCSDSQSFRDL AGEAAQISHEYNEMHKNIQANDTHTYLPECWAGLVPVKAELYKAFAHFYKARSIDATD EIKVSRNQDKLSTESFIGNSQEVESNFGTSEEAATSNANKLAHLKEALASIEEAQRLQ RMCRYLKNKSSLTEVMKEVHSKSQEELDRFRLQASANNIEEGDLLERVVEASSKFTLS LTGPDFTSHKVKDPFKRLGPIAIFSARRHWTAPRCVRLQKGSSSYHNVPANNRCPLDN DDEEHDGGFNLYKEEFENFGFHVRGDAPVIIAHVEINSLADLGGIKEGDFIVEIAGMD VKWYSHQQVVQLIQSCGSALELRVITPMDRNYLKPLSSKGSLSTLSAASSSGISSGFP SPTSIAAKPKLHLKTSSSSRAAGSVSSSSWNPFRRTPSLAKIF" misc_feature 331..585 /gene="Rhp" /note="Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Rhophilin-1; Region: HR1_Rhophilin-1; cd11633" /db_xref="CDD:212023" misc_feature order(382..384,391..393,400..405,412..417,421..426, 433..438,442..447,490..495,502..504,511..516,523..525) /gene="Rhp" /note="putative Rho binding site 1 [polypeptide binding]; other site" /db_xref="CDD:212023" misc_feature order(406..411,415..420,427..432,436..441,448..453, 475..480,484..486) /gene="Rhp" /note="putative Rho binding site 2 [polypeptide binding]; other site" /db_xref="CDD:212023" misc_feature 595..1782 /gene="Rhp" /note="Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains; Region: BRO1_Rhophilin; cd09244" /db_xref="CDD:185767" misc_feature order(940..942,949..951,988..990,997..1002,1132..1134, 1141..1146,1201..1203,1210..1215,1732..1734,1738..1740, 1744..1746,1750..1752) /gene="Rhp" /note="putative ESCRT-III binding site; other site" /db_xref="CDD:185767" misc_feature 1966..2160 /gene="Rhp" /note="canonical PDZ domain; Region: PDZ_canonical; cl49608" /db_xref="CDD:483948" misc_feature order(1966..1983,2005..2007,2014..2016,2101..2103, 2113..2115,2122..2127) /gene="Rhp" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467153" polyA_site 2617 /gene="Rhp" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tttagacttt acggtggttc ggaaactcgt acctggcgct atagttgtcg aaaggtaaca 61 gtaacctgtt gctttttttt tggtaatagt ggaaagtgta gtgaagacaa gtcaacatag 121 ctgatattaa gctgaaatgc tgtccagcca gtgctaaaaa tattacgttt accaaaatat 181 aaacacttaa gaggactccc atcggatctc cgaatgttta atcttggagc catggatggg 241 aaaaccgatg aactggccca gagagctggg aaaaatgagg agaacgagga tgacgagaag 301 ctgaatgagt tatccttctg ttttgttcgg ggttccgatc ccagagcggc aacatgtcgt 361 agcaaactgc aaaacaggcg gtgcaagttg aacaaagaga ttaacaagga actccgctta 421 agagctggtg ctgagaatct atataaggcc acatccaacc gaaagttacg agacacagtt 481 gccttggaac tgagctttgt caattcaaat ttgcaattgc tgaaggagca gctggctgag 541 ttgaattcct cggtggaaat ctatcagagt gaaagtcaca atggcattat gcccatgata 601 ccactgggct tgaaggaaac caaggagatt aactttatgg aaccgttttc cgacttcatt 661 ttggaacact acagcgaaga gccctcgatg tacatagatg ccatagcgga tatgacagat 721 acgagacagg cctccaaaac gccatcacgt gacgccctcg gggtggcgct acttttccgc 781 tactacaaca cactgtacta cgtggagcgt cgcttctttc cgcccgatcg caatttgggt 841 gtctacttcg agtggtacga ctccctgacg ggcgttccct cgtgccagcg caccattgcc 901 ttcgagaagg cctgcaccct gttcaatctg ggggggatat acacccagat cggggcccgg 961 catgatcgca ccaccgaaag gggtctcgat ttggccgtgg atagctttct ccgggcagca 1021 gggatcttcc gtcacatcta cgatacattc acgaatgccc cttcgatgga tctgaagccg 1081 caggtcctcg atgtccttgt ctcgctgatg ctctcccagg cacgcgagtg tctcttcgag 1141 aagttgcagc tgcagatcga ggcgataggt ctctccgaat tcagttgctc cgattcgcag 1201 tcgtttcggg atttggccgg agaggctgcc cagatatcgc acgagtacaa tgagatgcac 1261 aagaatatcc aggcgaacga tacgcacaca tatctgccgg aatgttgggc tggtctggtg 1321 ccagtcaagg cggaactcta caaagctttt gcccatttct acaaggcacg cagcatagat 1381 gcgacggacg agatcaaggt gtccaggaac caggacaaat tatccacgga atcctttatc 1441 ggcaactccc aggaggtgga gtccaatttt ggcaccagcg aggaggccgc cacttccaac 1501 gccaacaagc tggctcatct gaaggaggca ctggccagca tcgaggaggc ccagcgattg 1561 cagcgaatgt gtcggtacct aaagaacaag tcatcgctca ctgaggtcat gaaggaggtg 1621 cattccaagt cgcaggagga gttggatagg ttcagacttc aggcttcggc gaataatatc 1681 gaagagggcg accttctgga gcgagtcgtt gaagcttcct caaagttcac gttatccctg 1741 acgggacccg atttcacctc gcacaaggtg aaggatccct tcaagcgcct cgggcccatt 1801 gcaatcttct cggcgcgacg ccactggact gcgccgcgat gtgtgcgcct gcagaagggt 1861 tcatcctcgt accacaacgt gcccgccaat aacagatgtc cgctggacaa cgacgacgag 1921 gagcacgacg gcggcttcaa tctgtacaag gaggagttcg agaactttgg cttccatgtg 1981 cgcggcgatg cgccggtcat aattgcccac gttgagatca attcgctggc agacctgggc 2041 ggcatcaagg agggggactt catagtcgag atagctggca tggatgtcaa gtggtattcg 2101 catcagcagg tcgtccagct catccagtcg tgcggctccg cactcgagct gcgggtcata 2161 acgcccatgg atcgcaacta tctgaagcct ctgtcgtcga agggctcgct gtccacgctc 2221 tcggcggcca gctcatcggg catctcctcc ggctttccca gtcccacgag cattgcggcc 2281 aagcccaagc ttcatctgaa aacgtcgtcc agttcgcgag ccgccggcag cgtttcgtcc 2341 agttcgtgga atccctttcg gcgaactccg agcttagcta aaatatttta ggtagcgacc 2401 agttttactt tgtgttttct tggccatttc agtttagagc taatgttagg caataaactt 2461 aattattttt tacaaactta atcatgcatc acgttcgtta aattataaac ttatttaatt 2521 ttcctcctcc tcttctccca ccaagaaata atctgctaaa taaaaattaa ctctaatcat 2581 tttatttttt gtaaataaat caaaataatt accttca