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LOCUS XM_070218647 7773 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_070218647 VERSION XM_070218647.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7773 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7773 /gene="Nup153" /note="Nucleoporin 153kD; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108059114" CDS 868..6780 /gene="Nup153" /codon_start=1 /product="nuclear pore complex protein Nup153 isoform X2" /protein_id="XP_070074748.1" /db_xref="GeneID:108059114" /translation="MEDGQEQRESSQAELSKLHPMTPLKEMPEEEEEEEEGEEEEEEG EEEEDESSAGAKQSNSSSSNNNSIMGKMKMRVSSILPASLSGWFSPSSKGGPESSPAN LHQPRQANGRSTTKRKRGRRRIMLAEADADAADDLDDGSDAKGLNYEEVALADNIAEH DLAAEDEQTRRSEYNVFLLRKRREAVDAAAAAAGEDEADAEEDELEEEDDEEEDDDEE QENLLQAAAAQPKRRRLELETTVNLRRLPLLSSTPAAGPLAGATSSSSQLAGARSRSQ LAPHRRNHLNLYGGQRQREPAYNFFTGNEAAEGITGDLPHSIRRSLNIPFGGSTAISS LPNHKRPSLLGQRTHRRDLVAMDETGLGSSISNSDGERLDHLLRISKTNNNISNNNNN NNNNVIKSKSRGGGAGGDSQSESDVNDYHDNGEGLRPSSHHNSNSNLEFYGNLQSTKS IFNRSNAATAQPSSHRNSTWSLNSLNQRRRFNASIYGSTSALSDSRLLSRSASTSGSA SASASSSPFYQGRTTFGGNSANNRVFSRSNLSSSAASSTLAINSAGSSPALSLTAGGI GYGMKAVDMRPTAAAGGNLSETSVSQSGGKKSGSGLSNTTLRILNLLDSYSTPLIDAK RMGSTLKEHQSSRQQRQAAPVASPYPRPSAAAAAALRATPNLSTELAELRSNKLLVPT MQQLLERRRLHRVTQNSRDVVHNSRVENQPNPNANPNPNPEKAKQYVAPPPVDQPASH SQQHTNKMRSRLSHQTRNKEPRTELEEAPLPPDLPQISFPDMASAPKFDLVIKPTTVP VSKPSAVLPIVSNKQLPNFLANPQPAAPIVNSSANGNVIPAAASKPMGRTFSFSEPTP LSSSQVNCVDKLDIKRKYYFPSPASLNEVQPQPPTMNGAMGFGEQFKKSAKEWECDMC MVRNKAEVSKCVACETAKPVAKSGAPPPPPAQAAPFVPLSAGFGDRFKKSSSAWECDA CMLSNKAEASKCIACETPRKTATATAAPKVNNFPLMINNSGGVSGFGMAFKPKADTWE CQVCLVMNKSSAAECVACQSPKPNSQAKGARSPTTSSSSSSSSSGSSSGSSSGSSSGS SSSSSSSASGASSPGRSASAAATETPKQDAGFKQLVAAQKAASWDCDACMAQNDMSRV KCICCEQLKPGAASPASTSSVISISSSDSSASSVPKFSFGFATVKEVVKQPAAEQTPA APAAAPSQFSFGFGGSSVGKDVADSKKATTEATKTFAFGVGKVDQPKTVSFKADTKDT ETKTPAAAAPALQFVFKAPTTATTATTATSITTTTTSSSSSSTTAPALAAFSFGAPSS SSTVSSSTASTAVKPMFSFSGAGSAVSSSSSSSSSFGVSSNAITTTTTASSTTAFALA PAVTPSQAAPAPAANFSFGTSASASQPKTSSAGTFFFGQTPAAAATPATPASVSSIFG STVASTSSSSLSVTTTSTAASTPQLFGNWGEKKTTTTETTTSGSSSSATKAFTFGSGT TTSTPSFGWSSNGAAAAAKITSAAVSSSSASTMATPVFGSSPMFGATSSSSTISTTSS SPFGSTATATTAAAATPAASLGGNGALAGVFGHVGNSLVASSGAPGAATPATSASAAS TAAPLANIFGHPTPIAAAAPVFGSGSSNTSGGFGAAAAAAATSAATAGPGSKLAFNFG GGAAAAPAPSSAPFKFGSTTNEPAVKPAFNFTGSAASSTPQAATFNFSANPAATSLSG GDSQSQPRIFQFGNPLAVVDSQASGAGGANNNSTSGGMPIFNFTAAAAPQMQLQSASR WQFGAEFSDGSSQDPDSRAPPAAPVEMASQSAVEIANASAEAAIGLGLGWGVLPGGGG GGGGAAAEEYDSNSNSRIKRPVQKRSRRPPNDQYQRGNKYRFVRNGSAEAEAAGADSS RIRGWETGAAPPYPYRRHRPTRDQVNQEDNHSHNQTGGAGSGYVHVLRSRYKLVRRSN GDVPANETQKPG" misc_feature 3580..3666 /gene="Nup153" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 3592..3651 /gene="Nup153" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275376" misc_feature 3769..3843 /gene="Nup153" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 3769..3828 /gene="Nup153" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275376" misc_feature 3940..4029 /gene="Nup153" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 3952..4011 /gene="Nup153" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275376" misc_feature 4114..4173 /gene="Nup153" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275375" misc_feature 4249..4338 /gene="Nup153" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 4261..4320 /gene="Nup153" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275375" polyA_site 7773 /gene="Nup153" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tggagacatc gatagcagcg agccaacatc gattcaagtt ccagctctat actgtggcca 61 cacacgcgtt ttttcccaaa tcgtgctttt ttttgtgaaa tttcgtttgt tgcaatcggc 121 atttcattaa tttcgcgcag ccaacggaaa acccagcgcg ggcacgaaac cgagtcaaag 181 ttgccagcaa gtgcgtgcaa ttggccgcag gaaaatgcca aaattcggac cgattcgcag 241 cgcgcgtgtg tgtgtgtgag aagagtgaag aagaggagcg aagaattgcg aaagcagtgt 301 gtgcaaggcg gaagaagcac aaagacaaaa gggaggcgat aaaaaattcg gcaggcggtg 361 cggtgcggtg ctgtccggcg atcgaaacgg aacgaaacga agcgaaaaga atcgcaggag 421 caaaacaagg cggcatgccg gaaagcgtgc ccagcattca catagacgag gtggtggcca 481 aagttaaacc caaggcgaat gctgtcagtt tgtggcgcca aacggaatag tttttaaaaa 541 tatcgccgcg tgtgtgaaat ctcggcgaaa ctcgggagaa aagaataaaa aaccacgacg 601 gcgtgcgtaa gcgcactcac acgctcgcac acgcacagac agagagagag cgagagcgag 661 agggagagag cgacagctaa gagccagagc gagtgagcgc tacacacgca cacaaactcg 721 ctggcaggaa ttgcaacagt gtgtgcttct tttttttttt ttttgttgtg tgcgcggcgg 781 cgcttctttt tggctgcttt ttgtgtctct cttttgggcc gttgcttcgc cggctaagaa 841 ggaaaagcga aatttgaaat tggcataatg gaggatggtc aggagcaaag ggaatcctcg 901 caagcggagc tgtccaagct gcatccgatg acgccgctga aggagatgcc cgaagaagag 961 gaggaggagg aggagggtga ggaggaggag gaggagggtg aggaggagga ggacgaatcc 1021 tcggcgggag ccaagcagtc caatagcagc agcagcaaca acaactccat catgggcaag 1081 atgaagatgc gcgtctccag cattctgccc gcctccctga gcggctggtt ctcgccctca 1141 tcgaagggtg gccccgaatc ctccccagcc aatctccacc agcctcgcca ggccaacgga 1201 cgctccacca cgaagcggaa acgcggacgc cgtcgcatca tgctggccga agcggatgcc 1261 gatgcagccg acgacctgga cgacggttcc gatgccaagg ggctcaacta cgaggaggtg 1321 gccctggccg acaacatagc cgagcacgac ctggccgccg aggatgagca gacgcggcgc 1381 agcgagtaca atgtgttcct gctgcgcaag cgacgcgagg cggtggatgc cgccgctgct 1441 gccgctggcg aggatgaggc cgatgccgag gaggatgaac tggaggagga ggatgacgag 1501 gaggaagacg acgacgagga gcaggagaat ctcttgcagg cagccgcagc gcagcccaaa 1561 aggcggcgtc tggagctgga gaccaccgtc aacttgcgtc gtctgccttt attgtcatcc 1621 acgcctgctg ccggccctct tgcaggtgcc accagctcct cctcgcagtt ggcgggcgcc 1681 aggagcagaa gccagttggc tcctcaccgg cgcaaccacc tcaacttgta cggcggccaa 1741 aggcagcgcg aaccagccta caactttttc acgggcaacg aagccgccga gggcatcacc 1801 ggggatctgc cgcacagcat ccgtcgctcg ttgaacatac ctttcggagg cagcaccgcc 1861 atctccagcc ttcccaacca caagcgaccc tcgcttctgg gccagcgaac acatcgtagg 1921 gatctggtgg ccatggatga aacgggtctg ggctcctcaa tatccaattc cgacggcgag 1981 cggctcgatc atttgctgag gatcagcaag accaacaaca acataagcaa caataacaat 2041 aataataaca acaatgtcat caagtcaaag tcaagaggag gaggagctgg tggagattcg 2101 cagtccgaga gcgatgtaaa cgattaccac gacaatggtg agggactgcg accgtcgtcg 2161 catcacaaca gcaacagcaa tctggagttc tacggcaatc tgcagagcac caagtcgata 2221 ttcaacagga gcaacgccgc caccgcgcag ccatcatcgc atcgcaattc cacgtggtcc 2281 ctgaactcgc tgaaccagcg gcgtcgcttc aatgcctcca tttacggcag cacgtcggcc 2341 ctgagcgaca gtcgcctgct gagtcgcagt gcctcaacct ctggctcggc atcggcttcg 2401 gcctccagtt cgccgttcta ccagggacgc accacctttg gcggcaattc ggccaacaat 2461 cgggtgttta gtcgcagcaa tctaagctcc tcggccgcct cctccacgct ggccattaat 2521 tcggctggca gttcaccggc gctttcgttg accgccggtg gcattggtta cgggatgaag 2581 gcagtggata tgcgaccaac tgccgccgca ggtggtaatc tctctgaaac atctgtaagc 2641 cagagtggcg gcaaaaagtc cggctccggc ctgtcgaaca ccacgctgcg catcctcaac 2701 ctgctggaca gctactccac gccattgatc gatgccaagc gcatgggcag caccctcaag 2761 gagcaccaaa gcagtcgcca gcagcgtcag gcagctccgg tcgcatcgcc gtatccacgt 2821 ccctcggcgg cggcggcggc ggcgttacgc gctacgccca atctgtccac cgaattggcc 2881 gagctgcgct ctaataaact gctggtgccc accatgcagc agcttttgga acgccggcgc 2941 ctgcatcgcg ttacccagaa ctcccgcgat gtggtgcaca attcgcgcgt ggagaaccag 3001 ccaaatccaa acgcaaaccc gaatccaaat ccagagaagg ccaaacaata tgttgctcct 3061 cctccggtgg atcagccggc cagccatagt cagcagcaca caaacaagat gcgctcgcga 3121 ctctcgcatc agacgcgcaa caaggagccg cgcacggagc tggaggaggc acccctgccg 3181 ccggatctgc cgcagatcag cttcccggac atggccagtg cgccaaagtt cgacttggtc 3241 atcaaaccga cgacggtgcc agtctccaag ccatctgccg tgctcccaat cgttagtaat 3301 aagcagctgc ccaacttcct ggccaatcca cagcctgcgg ctcccattgt taactcttcc 3361 gccaatggaa acgtcatccc agcagccgct agtaaaccaa tgggacgcac attcagcttc 3421 tcggagccca cacctttgtc gagttcgcag gtgaactgtg tggacaagct ggatatcaag 3481 cgtaaatact acttcccttc accggcttca ctaaatgagg tgcaaccaca gccgcccact 3541 atgaatggag caatgggatt cggtgagcag tttaaaaagt ccgccaagga atgggagtgc 3601 gacatgtgca tggtgcgcaa caaggcggag gttagcaagt gtgtggcctg tgagacggcc 3661 aaaccggtag cgaaatctgg agctccccct cctcctccag cacaggcagc accatttgtg 3721 ccactttctg ccggctttgg ggatcgtttc aagaaatcct cttccgcctg ggagtgcgac 3781 gcctgcatgc tgtccaacaa ggcggaggcc agcaagtgca ttgcctgcga gacgccccga 3841 aagactgcga ctgcgactgc ggctccgaag gtgaacaact ttccgctgat gataaacaat 3901 tcgggtggag tttccggttt tggtatggcc ttcaagccaa aggcggatac gtgggagtgc 3961 caggtgtgcc tggtgatgaa caagtccagt gccgccgagt gcgtggcctg ccagtcgccc 4021 aagccaaatt cgcaagccaa aggcgcccgt agcccaacta catcgtcctc ctcctcgtca 4081 tcctcctcgg gatcatcttc tggctcatcc tcgggctcat cctcgggttc atcctcttcg 4141 tcgagcagct cagcctcggg tgcatcctcc ccaggaagat cagcatcagc agctgcaacg 4201 gagacgccca agcaggatgc tggattcaag cagctggtgg cagcccaaaa ggcagccagt 4261 tgggactgcg atgcttgcat ggcccagaac gatatgtcgc gcgtcaagtg catctgctgt 4321 gagcaactga agccgggagc agccagcccc gcctccacgt cctccgtgat ctcgatttcc 4381 tcctccgaca gtagcgccag ttcggtgccc aaatttagct ttggctttgc gacggtcaag 4441 gaggtggtca agcagccagc tgcggaacag actccggctg ctccagcagc tgctccttcc 4501 cagtttagct tcggctttgg gggcagcagt gtgggcaagg atgtggccga cagtaagaag 4561 gcgacgacgg aagccacaaa gacttttgcg ttcggcgttg gcaaagtgga tcagcccaag 4621 acggtgagct tcaaggcgga tacaaaggat acagagacta aaactccagc tgcagctgca 4681 ccagcccttc agtttgtatt caaagcacca actacggcaa ccactgcaac cacggccacc 4741 tcaatcacta ccacaaccac cagcagcagt agcagtagca ccactgctcc tgctttggca 4801 gcctttagct ttggcgctcc atcttcatcc tcgactgtgt ccagttccac ggccagcacg 4861 gctgtcaagc ccatgtttag cttctcggga gccggcagtg cagtcagcag cagcagcagc 4921 agcagcagca gctttggtgt ctcctcgaat gccattacaa caacgacgac agcctcctcg 4981 acgacagcct ttgccttagc accggcagta actccatctc aagctgcacc tgctccagct 5041 gccaacttta gctttggaac aagtgcaagt gcaagtcagc cgaagacgtc gtccgctgga 5101 accttcttct ttggccagac accagcggca gccgcgacgc cagcaacgcc agccagcgtg 5161 agctcaatct ttggatcaac agtggcgagc actagcagtt ccagcttaag tgtaaccacc 5221 accagcacgg ccgcctcaac cccgcagctc tttggcaact ggggtgagaa gaagacaacc 5281 acgacggaga cgacgaccag cggcagcagc agcagcgcaa cgaaggcatt cacctttgga 5341 tccggaacga cgacgagcac gcccagcttc ggctggtcaa gcaatggagc cgcggcggcg 5401 gctaagatca ccagtgcggc ggtgtcatcc tcgtcggcct ccacaatggc cacgccggtc 5461 tttggcagca gtcccatgtt tggagctact agcagcagca gtaccatcag caccaccagt 5521 agctcacctt ttggatcgac agcgacggcg acaacggcgg cggcggccac accggcagct 5581 agtttgggtg gcaacggagc cctcgccggg gtctttggcc atgtgggcaa ctcactggtt 5641 gcctcatctg gagcacctgg agccgccacg ccggctacct ctgcctcggc cgcctcgacc 5701 gctgctccgc tggccaatat ctttggccat ccgacgccca ttgcggcggc agcgcctgtt 5761 tttggcagcg gcagcagcaa tacgagcgga ggattcggag cagctgcagc tgcagctgcc 5821 acatcggccg caacagcggg cccgggatcg aagctagcat ttaactttgg cggaggagcc 5881 gcagccgcgc cagctccctc gagtgcacca ttcaagtttg gaagcaccac caatgagccg 5941 gcggtcaagc ctgcgttcaa ctttacgggc tccgcggcga gctcgactcc tcaggcggcc 6001 accttcaact tctcggccaa tccggcggcc accagtctgt ccggcggcga ttcgcagtcg 6061 cagccgcgca tcttccaatt tggaaatcca ttagcggtgg ttgatagcca ggctagtgga 6121 gcgggaggtg ccaacaacaa ctccacctcc ggcggtatgc ccatattcaa ttttaccgcc 6181 gccgcggcgc cgcagatgca gcttcaatcc gccagccgct ggcaattcgg cgcagaattc 6241 tcagatggct cgtcgcaaga tccggactcc cgtgcgccgc ctgccgcccc ggtagaaatg 6301 gcatcgcagt cggccgtcga gatagcaaat gcatctgctg aggccgccat cggattaggc 6361 ttaggatggg gggtgctgcc aggaggagga ggcggaggcg gaggagcagc agcggaggag 6421 tatgacagca acagcaacag caggatcaag agaccggtcc agaaacgtag tcgccggcca 6481 ccgaatgatc agtatcagcg tggcaacaag taccgctttg ttcgcaacgg cagcgcggaa 6541 gctgaggccg caggagcaga ctcttccagg atcagaggat gggaaacggg agcagcccca 6601 ccatatccat acagacggca ccggccgaca cgcgaccaag tcaaccagga ggacaaccac 6661 agccacaacc aaacgggagg agcaggatct ggatatgtac acgtgctcag gagccgctac 6721 aagctggtgc ggcgcagcaa cggcgacgtt ccggcgaatg agactcagaa accaggataa 6781 aacccaacct gcgcaacctg cgaaaagagg aaaaaggaaa aaggagcgga ggaccacaag 6841 gaggatatag gatgccgcac actacatata cacatacatg attacaaatt atatatatct 6901 tgttggtttg ttcacgcact tggggctact ggaggcgccc caaaaaggcc cgcacccaat 6961 cgtgtgtcta cacttaaaga ttaatatatt atatataatt tttttaaatt aatttttgtt 7021 gattataatg ctataatact accgataatt atgtaataat tattttgtga aattgtaaag 7081 aagcgattaa gctaaagctg ctgcaacaga tgcgaaagaa agtaatagcg caaaaaacgt 7141 aaactacatg atatatatat ataaaaacat atattaaagt gaaatcatct gtttagacaa 7201 ttttcgaacg cagagtgatc gatcggccga tgagctggct agatgagaag ataagaaggt 7261 tgcagccaga gaaatagaag gagttgtacg attgcattaa gtcttagttt ttgttattga 7321 ttttagattt taaattttag attttagatt tatataccaa tcatacgacc cttgtgttgc 7381 ctgtccagcg ttgaaaggac gaaaaggagt cctgcagcag ccaaggtgga aggccaacaa 7441 attaaagcaa gcaacagcaa caacaacaac aactatctag caacgtaaac aaacaaaacc 7501 tatagctaac agataacaga taagattgtg ggaatagaga gagacagaca gacgggtggc 7561 aaagatgcgg aaggagagcg aaaatagtta cgattatatg catgtttttt gtatacatat 7621 attcataaac aaaaaaaaaa cattgaatat attattttaa ttttaaattg atcatgttta 7681 agtcgataac agaaatggaa atcagaagtc ttaatgttga gagaaaaggt atcataatgt 7741 aaataagtaa atatatgcgg tatgataatt taa