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LOCUS XM_070218624 5543 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_070218624 VERSION XM_070218624.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5543 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5543 /gene="sog" /note="short gastrulation; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:108068627" CDS 837..3923 /gene="sog" /codon_start=1 /product="dorsal-ventral patterning protein Sog" /protein_id="XP_070074725.1" /db_xref="GeneID:108068627" /translation="MANKQRKSSEWATATGTVPLLERYCNSNSSSEETEVETEAQIPR SIHRAPLIRHLRHLLIAGLLIVCLVGGTEGRRHAPLMFEESDTGRRSNRPAVTECQFG KVVRELGSTWYADLGPPFGVMYCIKCECVAIPKKRRIVARVQCRNIKNECPPAKCDDP ISLPGKCCKTCPGDRNDTDVALDVPVPSEEEERNMKHYAALLTGRTSYFLKGEEMKSM YTTYNPQNVVATARFLFHKKNLYYSFYTSARIGRPRAIQFVDDAGVILEEHQLETTLA GTLSVYQNATGKICGVWRRVPRDYKRILRDDRLHVVLLWGNKQQAELALAGKVAKYTA LQTELFSSLLEASPQSDPQLAGAGGTAIVSTSSGAASSMHLTLVFNGVFGAEEFADAA LSVRIELPERKELIFDEIPRVRKPSAEINVLELSSPISIQNLRLMSRGKLLLTVESKK HPHLRIQGHIVTRASCEIFQTLLAPHSAESSTKSSGLAWVYLNTDGSLAYNIETEHVN TRDRPNISLIEEQGKRKAKLEDLTPSFNFNQAVGSVEKLGPKVLESLYAGELGVNVAT EHEASLIRGRLVPRPVADARDSAEPILLKRVQEEDPHAVGMAWMSIDNECNLHYEVTL NGVPAQELQLYLEEKPIEAIGAPVTRKLLEEFNGSYLEGFFLSMPSAELIKLEMSVCY LEVHSKHSKQLLLRGKLKSTKVPGHCFPVYTDNNVPVPGDHNDNHLVNGETKCFHSGR FYNESEQWRSAQDSCQMCACLRGQSSCEVIKCPALRCKAATEQLLQREGECCPSCVPT QQSAVQSSPAVNASDLLQQRRGCRLGDQFHTAGASWHPFLPPNGFDTCTTCSCDPLTL EIRCPRLVCPPLQCSEKLAYRPDKKACCKICPEGKQSSSNGHKAAPNNPNVLQDQAMQ RSPSHSAEEVLANGGCKVVNKVYENGQEWHPILMSHGEQKCIKCRCKDSKVNCDRKRC SRSTCQQQTRVSSKRRLFEKPDAAAPAIDECCSTQCRRSRRHHKRQPHHQQQRSSS" misc_feature 1131..1349 /gene="sog" /note="von Willebrand factor type C domain; Region: VWC; pfam00093" /db_xref="CDD:278520" misc_feature 1425..1829 /gene="sog" /note="A domain in the BMP inhibitor chordin and in microbial proteins; Region: CHRD; smart00754" /db_xref="CDD:214804" misc_feature 1848..2219 /gene="sog" /note="A domain in the BMP inhibitor chordin and in microbial proteins; Region: CHRD; smart00754" /db_xref="CDD:214804" misc_feature 2235..2573 /gene="sog" /note="A domain in the BMP inhibitor chordin and in microbial proteins; Region: CHRD; smart00754" /db_xref="CDD:214804" misc_feature 2598..2933 /gene="sog" /note="A domain in the BMP inhibitor chordin and in microbial proteins; Region: CHRD; smart00754" /db_xref="CDD:214804" misc_feature 3039..3221 /gene="sog" /note="von Willebrand factor type C domain; Region: VWC; pfam00093" /db_xref="CDD:278520" misc_feature 3297..3497 /gene="sog" /note="von Willebrand factor type C domain; Region: VWC; pfam00093" /db_xref="CDD:278520" misc_feature 3624..3854 /gene="sog" /note="von Willebrand factor type C domain; Region: VWC; pfam00093" /db_xref="CDD:278520" polyA_site 5543 /gene="sog" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ccgaacgaac gccgctagag aaacgcgcgc gcgctttggc agcaaaagcc cgaatacgaa 61 accgaaacgc gtccgcaacc gctcccgaac cgcgcccgaa ccgcacccga accgcatccg 121 aaccgcactc gaaccgctgc cgaaaacgtg accaatttgt gtcctgttct tcttcttccc 181 acccaaagtt cgatgaccaa tctaagcgat atcgattggc agcaggagtc atatcgaaaa 241 gtgcgcgcgc gtttagcgac gcattgcata taaatcaaat acgaaacaga ctttctgtga 301 acttttccct tttctttttt tttttgctgt gaaacccaca tacagcatat ataccgcaat 361 agtgccgaaa ctaaactgaa ctttacttag ccacactata ccatgcgatg atgaattgaa 421 attacagtaa aataagagta aaaagtaaca agtaaaaacc aagttaagaa aaacaagtct 481 cgaaactgaa aacgaaaaac gcaaatttat gcagccgcta aataaaaaca aaacaaaaca 541 caagacagcg aattaaaaac agcaaataga ataaatccaa tagatcggcg cgcgaaactc 601 gcgtgtgtta tctaatctgc aagagaagta caagaatcgg tatcggttct atactatatc 661 tatatctata tatctatatc cattgtgtgt gtgccagtgt gtgcgttgcg acctttgttt 721 ttatatattt tttgttgttg ttcaaactgt gaaacgtgct ttacaagccg ggcgtttaaa 781 atacatacta aatactacaa ctacacacca caaaataaca aaataaccat ataaatatgg 841 ccaacaagca gaggaaatcg agtgaatggg ccacggccac cggcacagta ccgctcctgg 901 aaaggtattg caacagcaac agcagcagcg aagaaacgga agtggaaacg gaagcccaga 961 tccccagatc catccacaga gcccccctga tccgccacct gcgccacctg ctcatcgccg 1021 gactgctgat cgtctgtttg gtgggcggta cggagggccg gcggcatgcg ccgctcatgt 1081 tcgaggagtc cgacacgggc aggcggtcca acagaccagc ggtcaccgaa tgtcagtttg 1141 gcaaagtcgt gcgcgaattg ggctcgacct ggtatgcgga tttgggtcca cccttcggag 1201 tgatgtactg catcaagtgt gaatgcgtgg cgatacccaa gaagcgccgc atcgttgcac 1261 gcgtccagtg tcgcaatatt aagaacgagt gtccaccggc caaatgcgat gatcccatct 1321 cgctgcccgg caaatgctgc aagacctgtc ccggcgatcg gaacgatacg gatgtggcct 1381 tggatgtgcc agtgcccagc gaagaggaag agcgcaacat gaaacattac gctgcgttgc 1441 tcacgggccg cacctcctat ttcctcaagg gcgaggaaat gaagtccatg tacaccacct 1501 acaatccaca gaatgtggtg gccaccgccc ggtttctgtt ccacaagaag aacctctact 1561 actcgttcta cacctcggcg cggatcggtc gtccccgggc cattcagttc gtcgacgatg 1621 ccggtgtcat tctggaggag caccaactgg aaaccacact ggccgggact ttgagtgtct 1681 accagaatgc caccggcaag atttgcggcg tttggcgtcg tgtgccccgc gattacaagc 1741 gcatcctgcg cgacgatcgc ctccatgtgg tgctcctctg gggcaacaag cagcaggccg 1801 agttggccct cgccggcaag gtggccaagt acacggccct ccagacggaa ctctttagct 1861 cgctcctcga ggcgtcgccc cagtcggatc cccagctggc cggagcaggc ggcacggcga 1921 ttgtgtccac cagcagcggt gccgcctcct cgatgcatct caccctggtc tttaatggcg 1981 tctttggcgc ggaggagttt gcggatgccg cgctgagtgt ccgcatcgag ttgcccgaac 2041 gcaaggagct gatcttcgat gagattcccc gcgtgcgcaa accctccgcc gagatcaatg 2101 tcctggagct ctcctcgccc atctccattc agaatttgcg cctgatgtcg cgtggcaagt 2161 tgctgttgac cgtcgagtcc aagaagcatc cccacctgcg catccaggga cacattgtga 2221 cccgtgccag ctgcgagatc ttccagaccc tcctggcgcc gcacagcgcc gaatcctcga 2281 ccaagagcag cggcctcgcc tgggtctatc tgaacaccga cggctcgctg gcctacaaca 2341 tcgaaacgga gcacgtgaac acccgcgatc ggcccaacat cagtttgatc gaggagcagg 2401 gcaagcgcaa ggccaagctg gaggatctga cgcccagctt caacttcaac caggccgtcg 2461 gcagtgtgga gaagctgggg cccaaggttc tcgagtcgct ctacgccggc gagctgggcg 2521 tcaatgtggc caccgaacat gaggctagtt taatccgcgg acgtctagtt ccccgtccag 2581 tggccgatgc ccgtgactcc gctgagccta ttctgctcaa gcgagtgcag gaggaggatc 2641 cccatgccgt gggcatggcc tggatgtcca tcgacaacga gtgcaatttg cactacgagg 2701 tgaccctcaa cggtgtgccc gcccaggaat tgcaactgta tctcgaggag aagcccatcg 2761 aggccattgg agcgcctgtc actaggaaac tactcgagga gttcaacggc tcgtatctgg 2821 agggcttctt cctcagcatg ccgtcggcgg agctgatcaa gctggagatg agcgtctgct 2881 atctggaggt ccactcgaag cactccaagc agctgcttct gcgcggcaag ctgaagagca 2941 ccaaggtgcc gggtcactgc ttccccgtct acacggacaa caatgtcccg gtgccgggcg 3001 atcataacga caatcatctg gttaatggcg agaccaagtg cttccactcc ggacgcttct 3061 acaacgaatc ggagcagtgg cgcagtgccc aggattcctg ccagatgtgc gcctgcctgc 3121 gcggtcagtc cagttgcgag gtcatcaagt gtcctgccct ccgttgcaag gctgccacgg 3181 agcagctgct ccagcgggag ggtgaatgct gtcccagttg tgtgcccaca cagcagtcag 3241 ccgtacaatc ctcgccggcc gtgaatgcca gcgatttgct gcaacagcga cgcggctgcc 3301 ggctgggcga tcaattccac acggccggag ccagctggca tccattcctg ccgcccaacg 3361 gcttcgacac ctgcaccacc tgcagctgcg atccgctgac cctcgagatc cggtgccccc 3421 ggctcgtctg cccgccgctg cagtgcagcg agaagctcgc ctaccggccg gacaagaagg 3481 cctgctgcaa gatctgcccg gagggcaagc agagcagctc caacgggcac aaggcggcgc 3541 cgaacaaccc caatgtgctg caggaccagg ccatgcagcg atcgcccagc cacagtgccg 3601 aggaggtcct cgccaacggc ggctgcaagg tggtcaacaa ggtctacgag aacggccagg 3661 agtggcaccc catcctcatg tcccacggcg agcagaagtg catcaagtgc cgctgcaagg 3721 actccaaggt gaactgcgac cgcaagcgct gctcccgctc gacgtgccag caacagactc 3781 gtgtctccag caagcggcgg ctgttcgaga agcccgacgc agcggctccg gccatcgacg 3841 agtgctgctc cacccagtgc cgccggtcga ggcgccacca caagcggcaa ccgcaccacc 3901 agcagcagcg ctcctccagt tgagcggttg cggttgtagg ttgtaggatg gccgggggat 3961 tccgagttca atcccgatct agattcagtt gcagaagcag aaacagagcc acggtagaaa 4021 gttgagccac tcactcactc agtgcgatgt gcaccaccac ccaaccactc acacacacac 4081 tcactcacac taacacacat cacccacaca aacgagccta catacacaca cttgtgcaag 4141 gacttgcata gatcgttgtt gttatgtggc agcaatgaaa acttgtatta tatatttgaa 4201 aacagaaaaa caaaaggagg aggaggagga gagaattctc aaaaaaaaaa aaatagagaa 4261 aaggagaggg ttagagagat gataatgaga tccttggaaa aggacattaa accagtgcag 4321 tttgctttaa attctccagc gcagaatttt caacagaaag cattttctga atttcttttc 4381 acaacccgcc ccccattgat ttcccccacc atcccaggca cccaaaaaaa aacattaaaa 4441 ttaaatttta atttattaaa aaaagcacca taaaaatcac attaaaaaac actaccaaaa 4501 acaaaaagaa ttcgaaattg aaactgtact gagttttgaa aacacacaca tttgacttat 4561 tgaaatactt aaaccttttc aattcattta aattcaaatt taaattgaaa tttgaaagca 4621 aatcgataac gcagcagcta tcgtgggaat attaacttaa atctaattat tctgattata 4681 catatataca atatttttta tatatacata tatatattta tatacatata tatatctata 4741 taatttatga gaaacaaaac acagtgggaa acgcatttgg cgcattatgt ggttatcgac 4801 atttgtatcg atatatctat tttagcaacc caaaagtttc aactgattga ctgaatggca 4861 aaaataaaat tagctttaaa tatgtttttc gcaagcaaga aaatgaagga aattgaaaac 4921 accgcttttc aatgtgaaat tattttttac taattgttac tcacaccgac acacaccaca 4981 cgcacacata catttaggaa tcgacaagca cacacataca cattgaaatg tttgtatttt 5041 ttaggaatat atttttaaat taaaatacat tttatggaac tttttcaata attatgtaca 5101 aaatttgtta aaaaaaaaag aaaactattt caaaaaatgc catgtacaca tatttataca 5161 caaacacaca catactccca taaaaagaac aaatcgaaaa aagaaacaaa aataaaattt 5221 agcgcataca cagacagaaa ttgtattaat tttttattct attaaattat tcttattatt 5281 attattttat gtttattatt attgtaatga ttttttttgt agcttgtata aacatttata 5341 tatatattct atatttaata attgattgat taattttaaa taattgatca atggcgagca 5401 aaaatattta aatcgacgaa gagctaaaca aacttgtact aataacttaa atttagtgtt 5461 tataaattaa acaaaaattg aaaatcaaaa acaacaacaa aacacacaca gagagaataa 5521 acaaaaaact acaaaatcac aaa