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LOCUS XM_070218623 2092 bp mRNA linear INV 09-DEC-2024 transcript variant X3, mRNA. ACCESSION XM_070218623 VERSION XM_070218623.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2092 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2092 /gene="exd" /note="PBX homeobox extradenticle; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins" /db_xref="GeneID:108056118" CDS 238..1368 /gene="exd" /codon_start=1 /product="homeobox protein extradenticle" /protein_id="XP_070074724.1" /db_xref="GeneID:108056118" /translation="MEDPNRMLAHTGGMMAPQGYGLSGQDDGQNTGSENEVRKQKDIG EILQQIMSISEQSLDEAQARKHTLNCHRMKPALFSVLCEIKEKTVLSIRNTQEEEPPD PQLMRLDNMLIAEGVAGPEKGGGGAAAASAAAASQGGSLSIDGADNAIEHSDYRAKLA QIRQIYHQELEKYEQACNEFTTHVMNLLREQSRTRPITPKEIERMVQIIHKKFSSIQM QLKQSTCEAVMILRSRFLDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELAR KCGITVSQVSNWFGNKRIRYKKNIGKAQEEANLYAAKKAAGASPYSMAGPPSGTTTPM MSPAPPQDSMGYPMGSGGYDQQQPYDNSMGGYDPNLHQDLSP" misc_feature 361..948 /gene="exd" /note="PBC domain; Region: PBC; pfam03792" /db_xref="CDD:461052" misc_feature 952..1134 /gene="exd" /note="Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner; Region: homeodomain; cd00086" /db_xref="CDD:238039" misc_feature order(952..966,970..972,1030..1032,1048..1050,1087..1089, 1093..1098,1105..1110,1114..1122,1126..1131) /gene="exd" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(958..960,967..969,1096..1098,1105..1110,1117..1119) /gene="exd" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" polyA_site 2092 /gene="exd" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 catatcgatt tatttttctg cgtatacaga acatactttc ctttcattgt attccaaaaa 61 ataatatatt tatatacttg cggaagttta caactgcaaa aaatgtgtcg ctaaatcaga 121 gtggaccgaa tataatatat gacctgctcg gcgaatatat aaacaaaggc aatcacaata 181 aaggaaggga aaaccaaata agtatttcta tctcgggttg atattgttcg gcgagtcatg 241 gaggatccaa atcgcatgtt ggctcacacc ggtggcatga tggctcccca gggatacgga 301 ttgtctggcc aggacgatgg ccagaacact ggcagcgaga acgaggtgcg caagcagaag 361 gacatcggcg agatattgca acagataatg agcatttcgg aacaatcact ggacgaggcg 421 caggccagaa aacataccct caactgtcac cggatgaagc cggccctttt ctctgttcta 481 tgcgaaatta aggagaagac cgtcctgtcg attcgcaaca ctcaggagga ggagccccca 541 gatccgcaac tgatgagatt agacaacatg ctgattgccg agggcgtggc cgggcccgaa 601 aagggcggtg gcggagcggc ggccgcctcg gcagctgcgg ccagccaggg cggctcgctg 661 tccatcgatg gtgccgacaa tgccatcgag cattccgact accgtgccaa gctggcgcag 721 attcgtcaga tctaccacca ggagctggag aagtacgagc aggcatgcaa cgagtttacc 781 acgcatgtca tgaatcttct acgcgaacag agtcgcacga gacccattac accaaaggag 841 atcgagcgaa tggtccagat tatacacaaa aagtttagtt ccatacaaat gcagctgaag 901 cagtcgacct gcgaggccgt gatgattctc cgttcgcgtt tcctcgacgc tcgccgcaag 961 cgccgcaatt tcagcaagca ggcatccgag atcctcaacg agtacttcta cagccatttg 1021 agcaacccat atccatccga ggaggccaaa gaggagttgg cacgcaagtg cggcatcacg 1081 gtctcccaag tgtccaattg gtttggcaac aagcgcattc gctacaagaa gaacatcggc 1141 aaggcacagg aggaggccaa tttgtatgcg gccaagaagg ctgccggcgc ttcaccgtat 1201 tccatggctg gtcctccgag tgggacaacc acacccatga tgtcacccgc tccgccgcag 1261 gattcgatgg gctatccgat gggctcgggt ggctatgacc agcagcaacc gtacgacaac 1321 agcatgggcg gttacgatcc aaatctccat caggatctaa gcccctgagg atcagggctt 1381 acgtatacga cgacagcaaa atagtgttta ctaaatttaa atctgtacga aatacgaaat 1441 ttttaactac gaacaatacg aaaatacgaa actaaaccat gtatacgatg tatatcaaat 1501 aaataaataa tacatgttgt tgttatccgc acacgtcaaa actaaataca aaaaatattt 1561 caaatgtaaa aacggtgaag attttgaaaa aatttaatgt ctcatttcca tcgaaagacg 1621 aattgtttct gcattactaa ggttttgaaa ttaaattaaa ggaaaacaca tgattatgta 1681 tgtgtttttt tttttgcaat aaataaagta ttatatatta actattgctt ttaaaacaac 1741 tttttaattt taattgcatt ggctaaaaat aattgtatta tttttgataa ttttattttc 1801 gaagaaaaac tcgtctttcg ctttgaatga aatatgctga attcttttgc ctcaattaaa 1861 acggatatta aaacagatta tttaaatgaa tacaaaaacg attattattt ttactgataa 1921 ataatatatg tcttcttcgc ccgtctttcg ctcacataaa acggtcaaat gaaaccattc 1981 aatgtatttc agtatgataa ggtattgcat taaaaatttt ggataacaat agaaaaatat 2041 ataaatacac aactttacac gaataacata ataaatataa aaaccaagta ta