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LOCUS XM_070218603 3192 bp mRNA linear INV 09-DEC-2024 (LOC138913805), mRNA. ACCESSION XM_070218603 VERSION XM_070218603.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq; includes ab initio. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..3192 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3192 /gene="LOC138913805" /note="uncharacterized LOC138913805; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins" /db_xref="GeneID:138913805" CDS 1..3192 /gene="LOC138913805" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_070074704.1" /db_xref="GeneID:138913805" /translation="MDQFKLLKAARSRAKASITRLLTASQDPRAGSNWELDEITVSLE RLNNVWKEFETISDQMALYDGEEGYIDPAIDNERYEDKYMQASTLFHTIKRRCQSSNE SDREGSNGRQSGNIDDAASSSSGLGTESLARFLQQQQELNERLAEQQSTFLRANSAAN VMHNELPKIHIKVFSGDYKEWPAFKNIFESTIHSKQHLTAIQKFHYLKTYITGEAADL IRHMPITDAAYEAAWSCLTERYNRPRHIVNTLLETFVNLPSTSRADVAVLRKVTDGAT EIVRGLDAAGQTNRDCWIIHFILAKIDAETRRKWIEGSRVLESPSVDDLLKFLDRRCE EFELIKSESDIDFKVGAPQLSKAKRSSHALVSMEDNACVKCNSKEHKIYGCPKFAEAS IDQRRTFVKTKSLCFNCLKLGHVSRKCESKFTCKICHNRHYSLLHADIPGSQAAVTTT QPHTDERHVSSAPGDATVTISHIARAQAAPTAESLCNGSTTATQPQGLRKSAFPTALV FVKTAKGSHITCRVLLDSGSELSYISERCVQALGLSRSPSRIVVSGISSIKAETTRGC STLDMQSRISDHTMKVRAHVLSKITSTLARHDIESSALKAFAGFELADSDYQSLAPVD ILLGSDYVWTVFTGQKMFDIQGNIIAISTIFGWVITSIVTTGCSSTTTMHSAIDIDST LRRFWELEDVNQEFHGKPEDDEVEQHFMKTHTRDSKGRYIVELPFKNSNEQFSDTLQG ALARFRGVERRLKKDPDLHSKYVKFMREYLQLGHMRELSPGDIDKGKSFYLPHHPVIT QKLRVVFDGSFKDTNGKSLNDALHIGPSILRNLFSICMRFRMFKFVFSADIVKMYRQI LVAANHCSYQRIVWREDESTPIKHYELSTVTYGTSSAPFLAVRVLDQLANDHQQEFPT AARILKEQFYVDDVLTGAPTEEELIYNQKELIQLMKCAGMELGKWVSNSSRITDRATS TTEVQGKGSTPTSKVLGIHWDPEEDTLSYKVCLAPNPDNTKRQVLSDVARSTVFDPLG ILSPVVVQFKILFQELWLLDLGWDTELPPKIAD" misc_feature 520..957 /gene="LOC138913805" /note="Protein of unknown function (DUF1759); Region: DUF1759; pfam03564" /db_xref="CDD:281552" misc_feature <1099..>1302 /gene="LOC138913805" /note="Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]; Region: AIR1; COG5082" /db_xref="CDD:227414" misc_feature 1522..2013 /gene="LOC138913805" /note="Cellular and retroviral pepsin-like aspartate proteases; Region: pepsin_retropepsin_like; cl11403" /db_xref="CDD:472175" misc_feature order(1573..1575,1579..1581,1585..1587,1654..1662) /gene="LOC138913805" /note="inhibitor binding site [active]" /db_xref="CDD:133136" misc_feature 1573..1581 /gene="LOC138913805" /note="catalytic motif [active]" /db_xref="CDD:133136" misc_feature 1573..1575 /gene="LOC138913805" /note="Catalytic residue [active]" /db_xref="CDD:133136" misc_feature order(1654..1665,1675..1686) /gene="LOC138913805" /note="Active site flap [active]" /db_xref="CDD:133136" misc_feature 2362..2991 /gene="LOC138913805" /note="Reverse transcriptase (RTs) in retrotransposons. This subfamily represents the RT domain of a multifunctional enzyme. C-terminal to the RT domain is a domain homologous to aspartic proteinases (corresponding to Merops family A17) encoded by...; Region: RT_pepA17; cd01644" /db_xref="CDD:238822" misc_feature order(2542..2559,2662..2667,2770..2772,2776..2781, 2962..2967) /gene="LOC138913805" /note="putative active site [active]" /db_xref="CDD:238822" misc_feature order(2542..2559,2662..2664,2776..2778) /gene="LOC138913805" /note="putative NTP binding site [chemical binding]; other site" /db_xref="CDD:238822" misc_feature 2665..2667 /gene="LOC138913805" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:238822" misc_feature 3034..>3189 /gene="LOC138913805" /note="Pao retrotransposon peptidase; Region: Peptidase_A17; pfam05380" /db_xref="CDD:461634" ORIGIN 1 atggatcagt ttaagcttct aaaggcagca agaagtcgtg cgaaggcaag cattacgcgt 61 ttgctaacgg cgtcacaaga tccacgtgcg ggatcaaatt gggaattgga tgaaatcaca 121 gtctcattgg aaaggctcaa caacgtttgg aaggagtttg agaccattag cgatcaaatg 181 gccctttatg atggagaaga ggggtacatc gatccagcca tcgacaacga gaggtacgag 241 gataagtaca tgcaagcaag caccttgttt cacaccatta aacggcgctg tcagtcatcc 301 aatgagagcg acagagaagg cagcaacggt aggcaatctg gcaacattga cgatgccgca 361 tcaagttcat caggattggg aaccgaaagc cttgctcgtt ttctacaaca acagcaggag 421 ctgaatgagc gtttagctga gcagcaatca acatttttga gagcaaactc cgcagcaaat 481 gtaatgcaca acgagctgcc aaaaatccac atcaaggtgt tttctggtga ctacaaagag 541 tggccagcct ttaaaaacat ctttgagagt acgatccaca gcaagcagca tttgacagca 601 atacaaaagt tccactactt aaaaacgtac attactgggg aagcagcgga cttgattcgt 661 catatgccaa taacggatgc tgcttatgag gctgcttgga gctgcctaac tgagcgatac 721 aacagaccac gtcacattgt caacactcta ctggaaacgt ttgtaaatct cccttcgaca 781 tccagggcag atgttgcagt tctgcgcaag gtgaccgacg gagccacgga gattgtacga 841 ggattggatg cagcagggca aactaacagg gactgctgga tcatacactt cattctggcc 901 aaaatcgacg ctgaaactcg acgcaaatgg attgagggaa gccgggtact tgaatctccg 961 tctgtggatg atttactcaa gtttttagac cgacgctgcg aggaattcga gctcatcaaa 1021 agtgagtcag acatagactt caaggttggc gcaccacaac tgagcaaagc aaagcgttcg 1081 tcccatgcct tagtatcgat ggaagataat gcttgtgtga aatgtaactc taaggagcac 1141 aagatctacg gttgcccaaa gtttgctgaa gcatcgatcg accagagacg cacatttgta 1201 aagacaaaat ccttgtgttt caactgtctt aagcttgggc atgtctcacg caagtgtgaa 1261 tccaaattca catgcaagat ttgccataat cgccattact cgctgctaca tgcagatatt 1321 cctggatcgc aagccgctgt gaccacgaca cagccacata ctgatgaaag gcacgtctca 1381 agcgctcccg gagatgctac ggtgaccatc agccatattg ctcgcgcgca agcggctccc 1441 acagctgagt ccttgtgcaa cggatcaaca acggctacac agccccaagg gctaaggaaa 1501 agtgcatttc caacagctct ggtatttgta aaaaccgcaa aaggatcgca cattacatgt 1561 cgggtacttt tggacagtgg ttcggaactg tcgtacatct cagagaggtg cgtacaggca 1621 cttggtctgt cacgctcgcc ctcacgcatt gtagtgtctg gaatttcatc gatcaaggcg 1681 gagacaacta gaggctgcag cacactggac atgcagtcaa ggatctcaga tcacacaatg 1741 aaagtacgcg cacacgtact cagcaaaatt acctccacgt tagcaagaca cgatatcgag 1801 tcctcagcac tcaaggcatt tgctggcttt gagcttgcgg attctgatta tcaatcgttg 1861 gcgccagtcg atattctttt gggcagcgat tacgtttgga ccgtgttcac cggtcaaaag 1921 atgttcgaca tccagggcaa catcatcgcc atttcgacca tttttggatg ggtcataaca 1981 tctatcgtta ctaccggctg ttcatctaca acaacaatgc actcggctat tgacattgac 2041 tcaacgcttc ggcgcttttg ggagctggag gatgtcaacc aggaattcca tgggaaacca 2101 gaggacgatg aagttgaaca gcactttatg aaaacgcaca ctcgggactc caaggggcgt 2161 tacatagtcg aacttccgtt caaaaactcc aacgaacagt tttcggatac tttacaagga 2221 gcactggcaa gattcagggg tgtagaacgc cgcctaaaga aggaccccga tctgcactca 2281 aagtatgtaa aatttatgcg tgaatacctt cagttaggac acatgcggga attatcgcca 2341 ggcgacattg acaaagggaa aagcttttac ttgcctcatc atccagtaat tacccaaaag 2401 ctaagggtag tatttgacgg ctcattcaag gatacgaatg gaaaatcctt aaacgatgct 2461 ctacacattg gacccagcat tctccgaaac ctcttctcga tttgtatgcg tttcagaatg 2521 tttaagttcg tcttttctgc agatattgtc aaaatgtatc gacaaatctt ggtggctgcc 2581 aaccattgta gctatcagcg tattgtttgg agagaagatg aaagtacacc tatcaagcac 2641 tatgagcttt ccacggtgac atatggcaca tctagtgcac cattcttggc agtaagagtc 2701 ctggatcagt tagctaacga ccaccaacaa gagtttccca ccgctgcaag aatcttgaag 2761 gagcagtttt atgtggacga cgtactgacg ggagcaccta cagaggagga gctaatttac 2821 aatcaaaaag agctgatcca attaatgaaa tgtgcaggca tggaacttgg caaatgggtt 2881 tcaaattcat cacgtataac tgatcgagct acttctacaa ccgaggtaca aggcaaagga 2941 tccactccta catcaaaggt tcttggcatt cattgggatc cagaagagga tacgttatcc 3001 tacaaagttt gccttgcacc aaatccggac aacaccaagc gccaagtgct gtctgacgta 3061 gcacggagca ctgtctttga cccgctgggt attttgtcgc cagtggtggt gcagtttaaa 3121 attctgttcc aagaattgtg gttactggat ctcggctggg acacggagct tcctccaaaa 3181 attgctgact ag