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LOCUS XM_070218602 3663 bp mRNA linear INV 09-DEC-2024 variant X2, mRNA. ACCESSION XM_070218602 VERSION XM_070218602.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3663 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3663 /gene="Vinc" /note="vinculin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108056424" CDS 126..3011 /gene="Vinc" /codon_start=1 /product="vinculin" /protein_id="XP_070074703.1" /db_xref="GeneID:108056424" /translation="MPVFHTKTIESILDPVAQQVSRLVILHEEAEDGNAMPDLSRPVQ VVSLAVANLVKVGRETINSSDDKILRQDMPSALHRVEGASQLLEEASDMLRSDPYSGP ARKKLIEGSRGILQGTSSLLLCFDESEVRKIIQECKRVLDYLAVAEVINTMEQLVQFL KDLSPCLSKVHREVGGREKELTHQVHSEILVRCLEQVKTLAPILICSMKVYIHIVEQQ GRGAEEAAENRNYLAARMSDELQEIIRVLQLTTYDEDTSELDNLTVLKKLSNAISNKM ELANEWLSNPYALRGGVGEKALRQVIDNAAEISERCLPQDSYPIRKLADEVTAMANTL CELRQEGKGQSPQAESLARGIRDRLGELQSLVHQAVLGVDKAGVQQTAHTIQGRLEQA VKWLQHPEINDGGLGERAINLIVEEGRKVAEGCPGHQKAEIQQLCDEVERLKRQAAGS GPAAKVAAKQLTQKLYELKAAIQNALVNRIVQDFMDVSTPLKQFTEAVLQPEGTPGRE QNFNQKSNNLQAFSDRASKTSRMVAAGGACGNKKIAEILLSSAAQVDSLTPQLISAGR IRMNYPGSKAADEHLQNLKQQYADTVLRMRTLCDQATDPADFIKTSEEHMQVYAKLCE DAIHARQPQKMVDNTSNIARLINRVLLVAKQEADNSEDPVFTERLNAAANRLERSLPA MVGDAKLVATNIADPAAAAAWKNSFQRLLGDVREVREAIAPPQPPPLPTSLPPPIPEL SALHLSNQNAERAPPRPPLPREGLAPVRPPPPETDDEDEGVFRTMPHANQPILIAARG LHQEVRQWSSKDNEIIAAAKRMAILMARLSELVLSDSRGSKRELIATAKKIAEASEDV TRLAKELARQCTDRRIRTNLLQVCERIPTIGTQLKILSTVKATMLGAQGSDEDREATE MLVGNAQNLMQSVKETVRAAEGASIKIRSDQTSNRLQWVRRQPWYQY" misc_feature 132..3005 /gene="Vinc" /note="Vinculin family; Region: Vinculin; pfam01044" /db_xref="CDD:460040" polyA_site 3663 /gene="Vinc" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tttaagtttg cgtttcagtt taactagaga tctggcccac aagaaaaaga aagagagaga 61 gagagagagg aaagtgagat aaacaaactg aaaaagaagg aagcgccaaa gcaaaagaaa 121 tcaaaatgcc cgtcttccac acaaaaacca tcgagagcat tctagatcct gtcgcccagc 181 aggtatctcg tctggtcatc ctgcacgagg aggccgagga cggcaacgcg atgccggacc 241 tcagcaggcc ggtgcaggtg gtctcgctgg cggtggccaa cctggtgaag gtgggccgcg 301 agacgatcaa cagctccgac gacaagatcc tgcgccagga catgccctcg gcattgcacc 361 gcgtggaggg tgcctcgcag ctgctggagg aggcgtccga tatgctccgc tccgatccct 421 actccggacc ggcgcgcaag aagctaatcg agggtagccg cggcatcctg cagggcacct 481 cctcgctgct gctctgcttc gacgagagcg aggtgcgcaa gatcatccag gagtgcaagc 541 gggtgctcga ctacctggcc gtcgccgagg tgatcaacac gatggagcag ctggtgcagt 601 tcctcaagga cctctcgccg tgcctcagca aggtgcaccg cgaggtgggc ggtcgcgaga 661 aggagctgac ccaccaggtg cacagcgaga tcctcgtccg ctgcctggag caggtcaaga 721 ccctcgcgcc catactcatc tgcagcatga aggtctacat ccacatcgtg gagcagcagg 781 gccgcggagc cgaggaggcg gccgagaaca ggaactattt ggccgccagg atgagcgacg 841 agctgcagga gatcatccgc gtgctgcagc tgaccaccta cgacgaggac accagcgagc 901 tggacaacct cacagtgctg aaaaagctct cgaacgccat ctccaacaag atggagctgg 961 cgaacgagtg gctctcgaat ccctacgccc tgcgcggcgg cgtcggcgag aaggcgctgc 1021 gccaggtgat cgacaacgcc gccgagatct cggagcgctg cctgccccag gactcgtacc 1081 ccatccgcaa gctggccgac gaggtgacgg ccatggcgaa cactttgtgt gaactccggc 1141 aggagggcaa gggtcagagt ccccaggcgg agtcactggc ccgcggcatt cgcgatcgcc 1201 tgggcgaact gcagtccctc gtccaccagg cggtgctcgg agtggacaag gccggcgtcc 1261 agcagactgc ccacaccatc cagggtcgcc tggagcaggc tgtcaagtgg ctgcagcacc 1321 cggagatcaa cgacggcggc ctcggcgagc gggccatcaa cctgatcgtc gaggagggcc 1381 gcaaggtggc cgagggctgc ccgggccacc agaaggccga gatccagcag ctgtgcgacg 1441 aggtggagcg cctcaagcgc caggcggccg gctcggggcc agcggccaag gtggccgcca 1501 agcagctcac ccagaagctc tacgagctga aggcggccat ccagaatgcg ctggtcaacc 1561 gcatcgtgca ggacttcatg gacgtgagca cgccgttgaa gcaattcacc gaggcggtgc 1621 tccagccgga gggaacgccc ggccgcgagc agaacttcaa ccagaagtcc aacaacctgc 1681 aggccttcag cgatcgcgcc tcgaagacct cgcgaatggt ggccgctgga ggagcctgcg 1741 gcaacaagaa gatcgccgag atcctgctct cctccgccgc ccaggtggac tcgctgaccc 1801 cgcagctcat cagcgccggc cgcatccgga tgaactaccc gggcagcaag gccgccgacg 1861 agcatctgca gaacctcaag cagcagtacg ccgacacggt gctgcgcatg cgcacgctct 1921 gcgaccaggc caccgatccg gcggacttca tcaagacctc cgaggagcac atgcaggtgt 1981 atgccaagct ctgcgaggac gccatccacg caaggcagcc gcagaagatg gtggacaaca 2041 cctcgaacat agcgcgtctg atcaatcggg tgcttttggt ggccaagcag gaggcggata 2101 actcagagga tccggtgttc acggagcgcc taaatgcggc cgccaatcgg ctggagcgat 2161 cgctgcccgc catggtgggc gatgccaagc tggtggccac caatatagcg gatccggcgg 2221 cggcggccgc ctggaagaac tccttccagc ggctgctggg cgatgtacgc gaggtgaggg 2281 aggccatagc gccgccgcag ccgccgccgc tgcccacctc cctgccgccg cccattccgg 2341 agctgagcgc cctgcatctg tccaaccaga atgctgagcg cgctccaccg cgcccaccgc 2401 tgcccaggga gggactggcg ccagtgcgtc cgccgccccc ggaaacggat gacgaggacg 2461 agggcgtctt ccgcacgatg ccgcatgcca atcagcccat cctgatcgcc gcccgtggcc 2521 tccaccagga ggtgcgccag tggtcgtcca aggacaacga gatcatcgcc gccgccaagc 2581 gcatggccat cctgatggcc cgactcagcg agctggtgct ctccgattcg cggggcagca 2641 agcgggagct gatcgccacc gccaagaaga tcgccgaggc ctccgaggac gtgacccggc 2701 tggccaagga gctggcccgc cagtgcaccg atcgcaggat ccgcaccaat ctgctgcagg 2761 tctgcgagcg catccccacc atcggcaccc agctcaagat cctctccacg gtcaaggcca 2821 ccatgctggg cgcccaggga tccgacgagg atcgcgaggc caccgagatg ctggtgggca 2881 atgcccagaa cctcatgcag agcgtgaagg agacagttcg tgccgccgag ggagccagca 2941 tcaagatccg atcggatcag accagcaatc ggctgcagtg ggtgcgccgg cagccgtggt 3001 accagtacta gatggtatag gggtgcctta ccatgggatg ccttaccatg ggatattaac 3061 agagcgaggg accctcggat ccgcatccgc ccacctgcca cgcgccttgt gtaacataca 3121 aagctaaaca ctaatcttaa tggtttctat tttaaatgtt aatcgcctaa tctgttccat 3181 ctaaaattca gttatttaag tgcctgcaac tatttattat gtccccccgg aaaagtactt 3241 gtgctcatgt cccccgcccg cccgattctg ttctatattt ttgttttcga taattgtaaa 3301 attaattatt aagcgtgcaa taaaaaagag aaatgaaaaa aagtaaggaa atgaaaagga 3361 aagcaatatg tacatacagg cagtcagatt taagcgaatg caatgtatat aataagtgac 3421 cagagttcaa ggaatttcaa atttccaatc gcatcccctc ctttgtattt gtagtgtact 3481 aacagaagca tttaaaccat agagtcccgt ttgtttgaaa tgtttgcaaa tgttcgaaat 3541 gtctaactca ctaaaacagc agggaaaaca actgctgaaa gcccaaacat gtaacccaaa 3601 aaagcgatgt gtgtcatgtt caatacatat ataattgaaa taaaactgaa tttcgggcct 3661 taa