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LOCUS XM_070218593 2640 bp mRNA linear INV 09-DEC-2024 (LOC138913802), mRNA. ACCESSION XM_070218593 VERSION XM_070218593.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq; includes ab initio. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..2640 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2640 /gene="LOC138913802" /note="uncharacterized LOC138913802; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:138913802" CDS 1..2640 /gene="LOC138913802" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_070074694.1" /db_xref="GeneID:138913802" /translation="MDPDQLRNVIQAVVANALAEQTAQSQAREQALMQQIEELARRVT AINVPPASAQTPQIVTYKAIEIVDTVQCNEPLDAVKCLPEFSGAQEAYVSWRQAAVAA YHIFRRFDGSSRHYQAVIIIRSKVRGPADAVLSSFGTVLNFDAIISRLDFTYSDKRPM HVIEQEMGTLRQGNLSLLQYYDEVEKKLTLLTNKATMSHDASAAEVLCVKFRDDALRV FITGLKRSLTDVLFSAKPKDMPTALALAQEVEANHERYSFAASFARSQEEKDKKQYPK AQERQQTPPQNNTQSGAAKNPYFTKQHKAQVHPAPCSGSSRENTAEPMEIDPSFSKIL KPSQAPAYQNGNPIDRARKKASSAAAKIDDDAILEYDSDAINFLGEDPCYIFAVEERR EIITAEHNRAHRSAQENVKQVLSEYYFPKMTKLANEVVQNCKTCARAKFGPILCIFLS LTSAHITDYSQAKYIPIVDGEILVWEEFAYVTHTANLSEYGRVIEETNSMIDMFPLSH MQKLLSVDTAHLQDLLESLGVHHRVARSLDFLGSMLKVVAGTPDAACKKITVFPVAHG ETMLQIIDNVIAECSGEIYAIKNCSVSPGATFCRLASESSCAKELHAGGVAHCRVQES DLHPITYVDEGIIIINDGSAKVRVDNGTETWTHGTHLITFDKQATINDTLFINHDNTR KRAPGTASLPLLNITASRDVLSLPYLHRLSERNLEFIKEFREEIDNNQTTKASAPVLV TPDFKKPFTVQCDASTTGVGGVLFQTDDSGGEHLIAYMSAKLNKAQRNYSITELECYA ALLSITKFRAYVEGMPFKVITDHASLKWLMSQKDLSGRLARWSLKLQAFDFRKGALYV VPDALSRVYMDELQKEKAEGLSR" misc_feature 1165..1320 /gene="LOC138913802" /note="Integrase zinc binding domain; Region: Integrase_H2C2; pfam17921" /db_xref="CDD:465569" misc_feature 1360..2199 /gene="LOC138913802" /note="Gypsy protein; Region: Gypsy; pfam07253" /db_xref="CDD:254125" misc_feature 2245..2589 /gene="LOC138913802" /note="Ty3/Gypsy family of RNase HI in long-term repeat retroelements; Region: RNase_HI_RT_Ty3; cd09274" /db_xref="CDD:260006" misc_feature order(2257..2268,2368..2376,2383..2385,2458..2460, 2587..2589) /gene="LOC138913802" /note="RNA/DNA hybrid binding site [nucleotide binding]; other site" /db_xref="CDD:260006" ORIGIN 1 atggaccccg atcagctccg aaatgttata caggctgtcg ttgcaaatgc ccttgcagaa 61 cagaccgctc aaagccaagc aagggagcaa gcgcttatgc aacaaattga ggaattggcc 121 aggcgagtaa cggcaatcaa cgttccgcca gcttcagccc agacccccca gatagtaaca 181 tataaagcca tagagatagt agacactgtt caatgtaatg aacctctaga tgctgtaaaa 241 tgcttgcccg aattttcggg agcacaggag gcatatgtct cctggcggca ggcggccgta 301 gcggcctatc acatttttag gcgattcgat ggcagctctc gccattacca agctgtaata 361 atcattagaa gcaaggttag gggacccgcc gacgcggtat tatcgtcgtt cgggacagta 421 ctcaacttcg atgcgattat aagtcgtctc gattttacct atagcgataa gcgcccaatg 481 catgtcatag aacaggaaat gggcacccta aggcagggaa atctctcact gttacagtat 541 tatgatgagg ttgaaaagaa actgaccctt ctcacaaaca aggccaccat gtcgcacgac 601 gcttcggcgg ccgaagtcct gtgcgtaaaa ttccgggatg atgcacttcg agtgttcatc 661 acgggattaa aacgcagcct cacagatgtc ctcttctcgg cgaagcccaa ggacatgcca 721 acagcacttg ctttagctca ggaggtggag gcaaatcacg agagatattc tttcgcggcc 781 tcttttgcaa ggagccagga ggaaaaggat aaaaaacaat atccaaaggc gcaagagcgt 841 caacaaaccc ctcctcaaaa taatacccaa tcaggtgctg ccaaaaatcc ctatttcacg 901 aagcagcaca aagctcaagt tcaccctgcc ccatgcagtg gctcgtctcg tgaaaatact 961 gccgaaccca tggaaattga cccttcgttt tctaaaatac tcaagccttc tcaggcaccg 1021 gcttaccaaa acggaaatcc gatcgatcgg gcccgcaaaa aagcctccag tgcagcggcc 1081 aaaattgatg atgacgccat cttagagtac gactcagatg caataaattt tttaggggaa 1141 gatccctgct acattttcgc agtcgaggag cgacgggaaa tcattactgc cgagcacaat 1201 agggcacaca gatcggcaca ggagaatgtc aaacaggtgc tctccgaata ttattttcct 1261 aaaatgacta aattggccaa cgaagttgtc caaaattgca agacctgcgc aagggccaag 1321 ttcggaccca tactttgcat attcctgtcc ttgacgtcgg cccacattac cgattactcg 1381 caggccaaat acattcccat cgtggatggt gaaatcctag tatgggagga gttcgcttac 1441 gtcacacata cagcgaacct ctcagaatat gggcgtgtaa tagaggagac aaacagcatg 1501 attgatatgt ttccactatc ccacatgcag aagcttctaa gcgtggatac cgctcatctc 1561 caagacttgt tagagtcgtt gggcgttcat cacagagtag ctaggagttt ggatttcttg 1621 ggatcaatgc taaaggtcgt ggcagggaca ccggatgccg cctgcaaaaa gattacagtt 1681 tttccagtcg cccatggtga gacaatgttg cagataatag acaacgtcat tgccgaatgc 1741 agcggagaaa tttacgccat caaaaactgc tccgtatccc cgggggccac gttctgccgc 1801 ctggcttcag agagttcatg cgccaaggag ttgcatgccg gtggggtagc acactgccga 1861 gtccaagaga gtgatctgca cccgataacc tatgtggacg agggaattat aatcatcaat 1921 gacggatcgg ccaaagttcg agttgacaac ggcacagaga cctggactca tggcacacac 1981 ctcataacct ttgacaaaca agccacgata aatgacactc tcttcatcaa ccacgataac 2041 acccggaaga gagctccagg gacagcaagt ctccccttgt tgaacatcac cgctagcaga 2101 gatgtcctca gcctcccgta tcttcaccgc ctaagtgaac gaaacttgga gttcatcaaa 2161 gagtttagag aagagatcga caacaaccag acaactaaag catcagcacc tgtacttgtc 2221 acccctgact ttaaaaagcc cttcaccgtt cagtgcgatg cgtcaacgac tggagtagga 2281 ggagttttgt ttcagacgga tgactcaggc ggcgaacatc tgatcgccta catgtcagcc 2341 aaactgaaca aggcgcagcg gaattatagc ataacagagc tcgaatgcta tgccgccctt 2401 ctcagcatca ccaaattccg cgcttacgta gaaggcatgc cgttcaaagt gatcaccgat 2461 catgctagtc taaaatggct gatgagtcaa aaggatttat ccggcagatt agcacgatgg 2521 agtctgaagc tgcaagcgtt cgactttcgt aaaggagcac tttacgtcgt accagatgcc 2581 ctctcacgag tgtatatgga cgagctacag aaagagaaag cagagggttt atccagataa