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LOCUS XM_070218573 9043 bp mRNA linear INV 09-DEC-2024 factor 2 (Trf2), transcript variant X5, mRNA. ACCESSION XM_070218573 VERSION XM_070218573.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..9043 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..9043 /gene="Trf2" /note="TATA box binding protein-related factor 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:108070355" CDS 540..5210 /gene="Trf2" /codon_start=1 /product="uncharacterized protein Trf2 isoform X2" /protein_id="XP_070074674.1" /db_xref="GeneID:108070355" /translation="MKENEKIPSNLLEIMGIVKNSSDSGQRTSTSTSDVNEENRVSSF EPGRRLVLNEVSGEFAQERDTENTSSPSPRKEESNEESADSSDKENQYPNHRPSRADD SRSPDSVAETENFKDSDVEIGANSVVLSESQIQHEQDESLVSDPLEEEEEKEHEEEVA SGNESEEKDSPRQNSFEEGTSGDNNSDKDSPSKASNSSSSTPKRPYSGSDNRSSEERT PKRRRQSVSDSEDNRRTLFTDSEDNPIKQRRLTYREQVEAYRRRVDAGSTPGRKSSSS EEEPPPPSPPFRYSELYWEQRRASDADSEPDSAFKYRPNANYHRTSPRNYSDEEEEEE IPESDTDQNSGGPLGYRVETRSTNYESSETSEDEARRRTVRRVVRRRRRPRNPEHREP EYRGEEQSESSPLPSSESPDRQDNSDENESDEEEKRVIPSRRRTTDDQQPSFSGWGYL TCRQDADYFSEPTDGKIIRKRKSPFEEESSNQSKRRPSEDTESEDSEKEDSEKVDSEK EDSEKEDSDKEDSDKEDSDKEDSDKEDSDKEDSEKEDSEKEDSDKEDSDNGGSDTEKE DRNTDKRDSDTDNDSNTEDPQDPRDSQDSASDNEQVPDSTGEPDQDNEQFPDSTEEPD QDNEQFPDSTEEPDQDKELGQTAAWTITPDDPKGIQDFQDFVLKQVQLINEIIEVGHQ VFQLGSIVCHGDFTFFQTLYERKVPIEEVVELVYRGILGVKEELRVALIARQDLSEPH SKDIIRPGDKLAYLRLDLFNKFVSKVNQSERIVDQRLLELQEVRKQQGLLEQKQRVLE RVRQQREQHRLQQLQVEREREERQEEEQRRLELERHLERWKEDFNRQLRLQREQEEIK LRQEEENRKREEERRSNYDSYYCQLPKHKHREQMQNEMVSIPVANLNGGLKAASSGSG GVVGVVTSSGVVSSAVLANAPRVYLTPSSTFMANRGQVAAGAGATGKIAGGSNVTSSV GTSSATAGTVRYFSQFSKMQTAGGPSLQRKLANGDTIVLANGNKSLFLSSSGGVGGDK ATNGNSLLTAKTELLEEEVMQPGTVIVDCDDDDDEDENENEDEDDEDGEDKDEKNNSH TAKSSGVQQEQPLALTTATNNAAASDDEPELDIVINNVVCSFSVGCHLKLREIALQGS NVEYRRENGMVTMKLRHPYTTASIWSSGRITCTGATSEAMAKVAARRYARTLGKLGFP TRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYEPELHPGVTYKMRDPDPKATLK IFSTGSVTVTAASVSHVESAIQHIYPLVFEFRKQRSLEELQHLRQKQHKQAGGDPSEL EKLIVAENKAAGLDDIFLNTTAAHTKPSPNERTPATSGILTSTIDSMQRLKQIENYSH MMKLTQEERRHIPFQGEKVNPAAASTSAAAAASSGDNICANARRRATECWATKLQYKR PRYNDPGTTGTVNASSTAASSSAASSSSSQAAPHLRTNPLKTAALANARMRGAKMPTV LKPGTRLAPIGGGYLQHQQHLQQQQQLQQQQQKMRQTSFSPSEFDVDDLIEEEESNEL DMQY" misc_feature <1902..2465 /gene="Trf2" /note="MSCRAMM family adhesin clumping factor ClfA; Region: MSCRAMM_ClfA; NF033609" /db_xref="CDD:468110" misc_feature 3894..4415 /gene="Trf2" /note="TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the...; Region: TLF; cd04517" /db_xref="CDD:239953" misc_feature order(3909..3914,3918..3920,3996..4001,4011..4013, 4017..4019,4038..4040,4044..4046,4056..4058,4062..4064, 4068..4070,4074..4076,4164..4166,4179..4181,4185..4187, 4272..4277,4290..4292,4329..4331,4335..4337,4341..4343, 4353..4355) /gene="Trf2" /note="putative DNA interaction surface [nucleotide binding]; other site" /db_xref="CDD:239953" misc_feature order(3954..3956,3975..3983,3987..3989,3999..4001, 4017..4019,4023..4025) /gene="Trf2" /note="putative TFIIA interaction surface [polypeptide binding]; other site" /db_xref="CDD:239953" misc_feature order(4215..4220,4254..4268,4275..4277,4290..4292) /gene="Trf2" /note="putative TFIIB interaction surface [polypeptide binding]; other site" /db_xref="CDD:239953" polyA_site 9043 /gene="Trf2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agccagcaag agagagggag agcagcagca gcagcgcggc ggcggccaca gcaacaaagc 61 cacaaaagag agcgacggcg agagagacag agagagaggg ggagagaact agacgacgcg 121 acgacctact acaaaaaaag gctctccaag gaagaaagga taaaagaaga aacaaccatt 181 caaatattta aggactttta agagactgca aaggaacaac aaaaactaca agctaattta 241 aataggagaa agaacggaag actagacata atcgtaatac agagtagttt agcattaggg 301 aaccgacaac aacaaaaacc actgcaaaca ctaattctaa ttcaaaatta cactaaaaga 361 gtattttttc agccctaaga gcaaacacac acacacatac acaccacaca cacaaacgaa 421 agaagaagaa tttgtagaag aatcactttt agccttatat acaactacaa agaaaaaaaa 481 aagaacgcaa gttagtatta agttaagatg ctagaaagag aggacgtagc aagaatccta 541 tgaaagaaaa cgagaagatt ccaagtaatt tgcttgaaat catggggatt gttaaaaaca 601 gcagcgattc cgggcaaagg acttcgactt cgacttctga cgtgaatgaa gaaaacaggg 661 tatcttcatt cgagccaggg cgtcgtcttg tcttaaacga agtaagcgga gaattcgctc 721 aagaaagaga caccgagaac acaagttccc cgtcgccacg caaggaagaa agcaacgaag 781 aatcagcaga ttcttcggat aaggagaatc aatacccgaa tcatcgtcct tcaagggcag 841 acgatagtag atctccggat tctgtcgcgg aaactgaaaa ctttaaggat tctgacgttg 901 aaatcggcgc aaactcggta gtactttctg aatcccaaat tcagcacgaa caggacgaat 961 cattagtatc tgatcctctc gaagaagaag aagaaaaaga acacgaagaa gaggtcgcta 1021 gcggtaacga gtcggaagaa aaggatagtc cgaggcaaaa tagcttcgag gaaggaactt 1081 caggcgataa taatagcgat aaagatagtc cgtcgaaagc ttcaaattct tcaagttcga 1141 ctccaaagcg gccttattcg ggttcagaca atcgaagctc cgaagaaagg acccccaaga 1201 ggcgacgtca gtcagtttca gatagcgagg acaaccgccg aactttattt actgactcgg 1261 aagataaccc cattaaacag aggagattaa cttaccgtga acaagtagaa gcctatagac 1321 gtagagttga cgccggaagt acaccaggac ggaagagttc atcttcagaa gaagaaccgc 1381 cgccgccttc gccaccattt agatattcgg aattatattg ggagcagcgg cgtgcttcag 1441 acgccgactc tgaacctgat tccgccttca aatatagacc taatgcgaat tatcaccgta 1501 catcaccgcg aaattatagt gacgaagagg aagaggagga gatcccagaa agcgataccg 1561 atcagaattc aggaggacca ctaggctata gggtagaaac ccgtagtacc aattacgagt 1621 caagcgaaac gtcagaagac gaggctcgca ggaggaccgt gaggcgtgta gttcgccggc 1681 gtcgtagacc acgcaatccc gaacatcgcg aacctgagta tcgcggggaa gagcaaagtg 1741 agagttcgcc actaccgtcc agtgaatccc ccgatcgcca agacaacagc gacgaaaacg 1801 agagcgacga agaggagaag cgggttatac cttcaaggcg tcgcactacc gacgatcagc 1861 agcccagctt ctcaggctgg ggatatctaa cgtgtcgtca ggacgcagac tatttctcgg 1921 aacccaccga cgggaagatc atcaggaaga ggaagtcgcc atttgaggaa gaatcctcga 1981 atcaatcaaa gagacgacca tcagaagaca ccgagagcga agactctgag aaggaagact 2041 ctgagaaggt agattctgag aaggaagatt ctgagaagga agattctgat aaagaagatt 2101 ctgataaaga agattctgat aaagaagatt ctgataaaga agattctgat aaagaagatt 2161 ctgagaaaga agattctgag aaagaagatt ctgataaaga agattcggac aacggaggtt 2221 ctgataccga gaaggaagat cgaaataccg ataaacgcga ttccgatacc gataacgatt 2281 ccaatactga agatccgcaa gatcccagag attctcaaga ttcggcttct gacaacgagc 2341 aggttcccga ttctactggg gagcccgacc aagacaacga gcagtttccc gattctaccg 2401 aggagcccga ccaagacaac gagcagtttc ccgattctac cgaggagccc gaccaagaca 2461 aggaactagg acagactgcc gcttggacca tcacacccga tgatcccaag ggcattcaag 2521 acttccaaga cttcgtccta aagcaggtgc aactgatcaa tgaaatcatc gaggtcggcc 2581 atcaagtatt ccaactggga tcaatagttt gccatggtga ctttacgttc tttcaaacac 2641 tttacgagcg gaaagttcca atagaagagg tcgttgagct agtctaccgg ggcattctcg 2701 gtgtcaagga ggagctcagg gtggcattga tagcccgcca agatctaagc gagccacatt 2761 cgaaagacat catcaggcca ggagataaac tagcctattt aagattggat ttgttcaata 2821 aatttgtatc aaaagtcaat cagtccgaga ggatcgtgga tcaacgcctt cttgagctgc 2881 aggaggtacg gaaacagcag ggactactgg agcagaagca gcgcgtcttg gagagagtgc 2941 gccagcagcg ggaacagcac cgcctgcagc agcttcaggt ggagcgggag cgtgaggagc 3001 gccaggagga ggagcagcgg cgcctggagc tcgaacgcca cttggagcgt tggaaggagg 3061 acttcaatcg ccagctgcga ctgcagcgcg agcaggagga gatcaagttg aggcaagagg 3121 aggagaacag gaagcgagaa gaggagcgca ggagcaacta cgacagctac tactgccaac 3181 tgccgaagca caagcaccgc gagcagatgc aaaacgaaat ggtcagcatt ccagtggcta 3241 atttgaacgg tggcctcaag gcggccagca gtggatccgg tggtgtggtc ggtgtggtca 3301 cctcctccgg cgttgtctcc tcggccgtgc tggccaatgc gccgcgtgtc tatctgacgc 3361 cctcctccac attcatggcc aatcgtggtc aggtggcggc gggggcgggg gccaccggaa 3421 agattgcagg agggagcaac gtaacttcat ccgtcggcac atcttcggcc accgccggca 3481 ctgtacgcta cttttcgcaa ttcagcaaaa tgcaaaccgc cggcggaccc agtttgcagc 3541 gtaaactggc caacggcgac accattgtgc tggccaacgg caacaagagt ctgttcctca 3601 gcagcagtgg aggcgttgga ggcgacaagg ccaccaatgg caatagtttg ctaacggcca 3661 aaacggagct tctcgaggag gaagtcatgc agccgggaac tgtgattgtc gactgcgacg 3721 acgacgacga cgaggatgag aatgagaatg aggatgagga cgatgaagat ggggaggata 3781 aggatgagaa gaacaacagc cacactgcca aatccagtgg ggttcaacag gagcagccgt 3841 tggctttgac caccgcaacc aacaatgcag ccgcctccga tgatgaaccc gaactggata 3901 ttgttattaa taatgtggta tgctccttca gcgtgggctg ccacctcaag ctgcgcgaaa 3961 tcgctctcca gggctcaaat gtcgagtacc gtcgtgagaa cggtatggtg acaatgaagc 4021 tccgccatcc gtacacgacg gcatccattt ggtcctcggg caggatcacg tgcactggag 4081 ccacctccga ggcaatggcc aaggttgcgg ctcgccgcta tgcgaggacc ctgggcaagc 4141 tgggatttcc cacccgcttt ctcaacttcc ggatcgtgaa tgttctgggc acctgcagca 4201 tgccctgggc catcaagatc gtcaatttct cggagcgcca tcgcgagaat gcgagctacg 4261 agcccgagct gcacccgggc gtgacctaca agatgcgcga tcccgatccc aaggccacgc 4321 tcaagatctt ctccaccggc agcgtgaccg tgacggcggc cagcgttagc cacgtggagt 4381 cggccattca gcacatttac ccgctcgtct ttgagttccg caagcagcgt tcgctggagg 4441 agctgcagca tctgcgccag aagcagcaca agcaagcggg cggtgatccc agcgaactgg 4501 agaagctgat cgttgcggag aacaaggcgg ccggactgga tgatatcttc ctcaacacaa 4561 cggcggcgca cacgaagccc tcgccgaatg agcgtacgcc ggccacatcg ggcatcctca 4621 cgagcaccat cgatagcatg cagcgtttga agcagatcga gaattattct cacatgatga 4681 agctgacgca ggaggagcgc cgacacatac ccttccaggg tgagaaggtt aacccggcgg 4741 cggcttctac ttcggcggca gctgctgctt cgtcggggga taatatctgt gccaatgccc 4801 gtcgccgggc caccgagtgc tgggccacca agctgcagta caagcgtccg cgttacaatg 4861 atcccggcac cacgggcacc gtcaatgcct cgtcaacagc cgcctcctcc tcagctgcct 4921 cgtcatcctc ctcacaggca gcgccacacc tgcgtactaa tcctctcaag acggccgctt 4981 tggccaatgc ccgcatgcgt ggcgccaaaa tgccaacggt gctcaagccg ggcacgcgtc 5041 tagcgcccat cggcggtggc tatctgcagc accagcagca tctgcagcag cagcagcagc 5101 tgcaacagca gcagcagaag atgcgccaga ccagcttctc gcccagcgag ttcgatgtgg 5161 acgatttgat cgaggaggag gagagcaacg agctggacat gcagtattga gctagccaag 5221 cagctgccca agccaaaaaa acacatttaa acattaacat ttaaatgatg ataattcgat 5281 ggaaaagaaa agcaaacaga gagcttttcc ccgaatttgt tggcactttg tttaagccat 5341 ttttcatcac aatacaaaca cacacattta tttttgtgct cgccgcattt aaaacacgaa 5401 ctcgaggaaa accggacgca ggagcgaaaa caaaaaaata tttaaaaaca aaaaaggatg 5461 aaaggagaac attttaatcc aaagcgaaac aaaattccca gcagcaacac caactaaata 5521 gcagcagcaa caacaaaacc aagagccaaa tatttaactt ataagattta cgtttaaacg 5581 actttgtaac ttaagcgagc acatctgaaa caaactagca gagttagcat atagcgatga 5641 tttcgaaccc gaaggattcc cagcagcagc agcaacctca agaacatcca gatggtaaac 5701 acacagagag agcttaccac aacgtaaacc taagtgtaga cttaaagaaa gcgttatgaa 5761 tacgtatatg ccagcgtttt acgtatgcaa ccaaaaaaaa cgaaatgtgc ggattgcttt 5821 gaaggaggag gagttacaat ctattttttt tttactcggt ttaaatagtt aatttatgtg 5881 agcaagacca ccgcctaagc aaatactgta aacccgaatg gatcacatac gacttatata 5941 tatcaagata gcctttccct ttttttttgt tgtttgacca agaccaagtt cttccggagc 6001 aaaccaaaat tctcaagagg aaaggagcag aggaggagac cagagaaaac actaggataa 6061 tattaactga tttatttcat gtattttcac acacccattt aataattttt tttgttttcg 6121 ctcgtaagtt ctagatgcta taagcgttgc ttcatgtgaa gcaaaacaaa caaaaacatt 6181 tgaatacgat tataattata ttataatacc aacacacaca caaacaccta tatctggtca 6241 ctaataacca attataacaa aactgaaaat acagcaagta attatgtttt aatttatgct 6301 agtagttttt gggttgcgca gaagaacact caatcgaatt aggaataaac acctggatga 6361 tagaagattg ttgtagggtt tatttttaaa gcaaccaggt gaatgcgcga cttgaaacta 6421 ttatcagacg atgtatacct aatgcatata ttcgtatata tactataaaa tatattaatg 6481 tttttttttt atgtaattcg cattattcgc ataatttaat gacaaattta gaggaagcaa 6541 ctttaagcgt agatttacaa acttgttcct gtgttgttaa aatcagaaag taaagaactt 6601 attttagtta acgaaactta acgaagcata cgcatacaca aacactcaca cacacacaca 6661 cattaacaca agcatacgta tacatataca taatgttaag gcatccaaac aaagcaacaa 6721 acaaacaaac aaaagagcga atcataagca ataatagaat gttttcgttg taaagaggta 6781 aaaactaaac aaacaaatac tcacgttaaa cataaaaaat aaactctaga tgttttggcg 6841 tgccttcacc cgtaaatagg aaaaacaaaa agcgagatac gatagccaat tgtacaatca 6901 ttgaaatagt acttccagac cagaacgaac ccaaaactct ttgtacatag acccaaaatt 6961 gatgttttcc aattgaacgt gaatattgcc tcatcaactt gaaatttctt ttgtgcttaa 7021 cgtaaaaacc aactttcata tcgttcaaaa cttatgcata atcaaaatag ctaaaacaaa 7081 caaaagagat ggggaatatt taagagacgt aatatcatat attttttttt atattttttt 7141 tattttgtat tctgtctttc tttgataatt tatattttga tttgcataaa caaaatcgag 7201 aaatgaaaat gcctttaggg aacaaataac tagcgcggaa aggaaagaga ggggagatag 7261 gtttaggtat tgagaaagcg agagatagag agaaggatat tgaacagatc aattggagcc 7321 gaaatgtatt tttttgtgta tgcgaatgtg gatagagata gtagggatag gaataggtct 7381 cgagacagac ccgaacgtgt tacaattgca aaattaacta gccactaagc cacttagccc 7441 taagttagct gagaaacgga atactaaatt gtaagccaaa atgcatatag caatctaaca 7501 aaaaaaacaa aatctaatgg aacctaacga cgagaaccta aatgtaatct aaatgtacat 7561 aaaatagttg ttaacaaatc acaaaaaaca aacgaaagca agaaaccaac aatagagtaa 7621 agtcttcacg tctaactgcc ttcgaaaaaa caaaaagaaa gatacagaaa aagaaaaaga 7681 aaggaaaatc ggaagtattc tattctaaac accgactgta aattgcttgt actttcacca 7741 cattttcttt tttgttaaag caacgacagc aacaacaaca acattaatag aacagaacag 7801 acggatcgaa aggcctaaat aagtgtattt ggtttcaaga actttaaaaa agcaaaacta 7861 aatattaatg atagtataca gatatatttt tgattattat gtatttaatg agaacaatgt 7921 aatgaaaatg atgcaagtat cgatatcgat atgataacta agagaaaaca aattgagaaa 7981 tcaaatagca taattctgtt tttgttttgc cgtaaagact gcattatacc aacaattaat 8041 tatatacaaa ataataataa taataatatt aataaatcaa taactgataa atggcgagta 8101 agcgagagct ttgcattgag cagagaccaa aacggatgaa taaatatata tatatatatt 8161 aaaacaacca gaaaaaatat tctaaaaacg aatacaaaaa aaaaaacaaa acaaacaaat 8221 atgaaagaaa aacaaaaaac atggaaaaca aaaccaagaa acatttattt attagatcct 8281 aagagaagtt tcgctagcgg agatcgagtc aggccagagc ggaccttaaa ggtaccccgc 8341 atcccagaac gaaaagcaag atgaaattac cttaccaaaa cgtgggcgag tctacaaaag 8401 tctataatag ggcgataggg agaatcggaa taattagaga actatcgtat gataaatcaa 8461 ttaccaacta actggctaac ttatacccac taagatttat agttccccct aatccctgaa 8521 actagttcta agtacataag ttgcaagcga aaaaaaaact aaaagttaga tttatacaca 8581 aaaggatata tacatcatat atatatatat atgtggagaa ggaggaaggt ttactttggt 8641 tttgagattg ccgcatcttc acatctcaag caatacgttt gtataccatt tgttattccg 8701 aaacgcgacg gttttcgaaa tcgccagttt tgggcgattc gaaacatcga aacgtttcgt 8761 agctaacact tggatatgaa tatttaacaa aaagccacac aaacattaac acgacaacaa 8821 caacaacact catttgatgt atttagttta acgtttagcc cctagtttca agaaaaatca 8881 cacacgaaac aagaaaacgc aaaattcgag gaacgtgaaa atgcctttcc tgaactgcag 8941 tcaacactca aatatatggc aacaaaaaaa caacaaaaat gagaaaagaa acaaaccaac 9001 caaatgaaag caaattgttt gaataaaaat caaattacat aaa