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LOCUS XM_070218572 8928 bp mRNA linear INV 09-DEC-2024 factor 2 (Trf2), transcript variant X3, mRNA. ACCESSION XM_070218572 VERSION XM_070218572.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8928 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8928 /gene="Trf2" /note="TATA box binding protein-related factor 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:108070355" CDS 419..5095 /gene="Trf2" /codon_start=1 /product="uncharacterized protein Trf2 isoform X1" /protein_id="XP_070074673.1" /db_xref="GeneID:108070355" /translation="MKENEKIPSNLLEIMGIVLSKNSSDSGQRTSTSTSDVNEENRVS SFEPGRRLVLNEVSGEFAQERDTENTSSPSPRKEESNEESADSSDKENQYPNHRPSRA DDSRSPDSVAETENFKDSDVEIGANSVVLSESQIQHEQDESLVSDPLEEEEEKEHEEE VASGNESEEKDSPRQNSFEEGTSGDNNSDKDSPSKASNSSSSTPKRPYSGSDNRSSEE RTPKRRRQSVSDSEDNRRTLFTDSEDNPIKQRRLTYREQVEAYRRRVDAGSTPGRKSS SSEEEPPPPSPPFRYSELYWEQRRASDADSEPDSAFKYRPNANYHRTSPRNYSDEEEE EEIPESDTDQNSGGPLGYRVETRSTNYESSETSEDEARRRTVRRVVRRRRRPRNPEHR EPEYRGEEQSESSPLPSSESPDRQDNSDENESDEEEKRVIPSRRRTTDDQQPSFSGWG YLTCRQDADYFSEPTDGKIIRKRKSPFEEESSNQSKRRPSEDTESEDSEKEDSEKVDS EKEDSEKEDSDKEDSDKEDSDKEDSDKEDSDKEDSEKEDSEKEDSDKEDSDNGGSDTE KEDRNTDKRDSDTDNDSNTEDPQDPRDSQDSASDNEQVPDSTGEPDQDNEQFPDSTEE PDQDNEQFPDSTEEPDQDKELGQTAAWTITPDDPKGIQDFQDFVLKQVQLINEIIEVG HQVFQLGSIVCHGDFTFFQTLYERKVPIEEVVELVYRGILGVKEELRVALIARQDLSE PHSKDIIRPGDKLAYLRLDLFNKFVSKVNQSERIVDQRLLELQEVRKQQGLLEQKQRV LERVRQQREQHRLQQLQVEREREERQEEEQRRLELERHLERWKEDFNRQLRLQREQEE IKLRQEEENRKREEERRSNYDSYYCQLPKHKHREQMQNEMVSIPVANLNGGLKAASSG SGGVVGVVTSSGVVSSAVLANAPRVYLTPSSTFMANRGQVAAGAGATGKIAGGSNVTS SVGTSSATAGTVRYFSQFSKMQTAGGPSLQRKLANGDTIVLANGNKSLFLSSSGGVGG DKATNGNSLLTAKTELLEEEVMQPGTVIVDCDDDDDEDENENEDEDDEDGEDKDEKNN SHTAKSSGVQQEQPLALTTATNNAAASDDEPELDIVINNVVCSFSVGCHLKLREIALQ GSNVEYRRENGMVTMKLRHPYTTASIWSSGRITCTGATSEAMAKVAARRYARTLGKLG FPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYEPELHPGVTYKMRDPDPKAT LKIFSTGSVTVTAASVSHVESAIQHIYPLVFEFRKQRSLEELQHLRQKQHKQAGGDPS ELEKLIVAENKAAGLDDIFLNTTAAHTKPSPNERTPATSGILTSTIDSMQRLKQIENY SHMMKLTQEERRHIPFQGEKVNPAAASTSAAAAASSGDNICANARRRATECWATKLQY KRPRYNDPGTTGTVNASSTAASSSAASSSSSQAAPHLRTNPLKTAALANARMRGAKMP TVLKPGTRLAPIGGGYLQHQQHLQQQQQLQQQQQKMRQTSFSPSEFDVDDLIEEEESN ELDMQY" misc_feature <1787..2350 /gene="Trf2" /note="MSCRAMM family adhesin clumping factor ClfA; Region: MSCRAMM_ClfA; NF033609" /db_xref="CDD:468110" misc_feature 3779..4300 /gene="Trf2" /note="TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the...; Region: TLF; cd04517" /db_xref="CDD:239953" misc_feature order(3794..3799,3803..3805,3881..3886,3896..3898, 3902..3904,3923..3925,3929..3931,3941..3943,3947..3949, 3953..3955,3959..3961,4049..4051,4064..4066,4070..4072, 4157..4162,4175..4177,4214..4216,4220..4222,4226..4228, 4238..4240) /gene="Trf2" /note="putative DNA interaction surface [nucleotide binding]; other site" /db_xref="CDD:239953" misc_feature order(3839..3841,3860..3868,3872..3874,3884..3886, 3902..3904,3908..3910) /gene="Trf2" /note="putative TFIIA interaction surface [polypeptide binding]; other site" /db_xref="CDD:239953" misc_feature order(4100..4105,4139..4153,4160..4162,4175..4177) /gene="Trf2" /note="putative TFIIB interaction surface [polypeptide binding]; other site" /db_xref="CDD:239953" polyA_site 8928 /gene="Trf2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttaaaaaagt acaaaaaagg ctctccaagg aagaaaggat aaaagaagaa acaaccattc 61 aaatatttaa ggacttttaa gagactgcaa aggaacaaca aaaactacaa gctaatttaa 121 ataggagaaa gaacggaaga ctagacataa tcgtaataca gagtagttta gcattaggga 181 accgacaaca acaaaaacca ctgcaaacac taattctaat tcaaaattac actaaaagag 241 tattttttca gccctaagag caaacacaca cacacataca caccacacac acaaacgaaa 301 gaagaagaat ttgtagaaga atcactttta gccttatata caactacaaa gaaaaaaaaa 361 agaacgcaag ttagtattaa gttaagatgc tagaaagaga ggacgtagca agaatcctat 421 gaaagaaaac gagaagattc caagtaattt gcttgaaatc atggggattg ttctcagtaa 481 aaacagcagc gattccgggc aaaggacttc gacttcgact tctgacgtga atgaagaaaa 541 cagggtatct tcattcgagc cagggcgtcg tcttgtctta aacgaagtaa gcggagaatt 601 cgctcaagaa agagacaccg agaacacaag ttccccgtcg ccacgcaagg aagaaagcaa 661 cgaagaatca gcagattctt cggataagga gaatcaatac ccgaatcatc gtccttcaag 721 ggcagacgat agtagatctc cggattctgt cgcggaaact gaaaacttta aggattctga 781 cgttgaaatc ggcgcaaact cggtagtact ttctgaatcc caaattcagc acgaacagga 841 cgaatcatta gtatctgatc ctctcgaaga agaagaagaa aaagaacacg aagaagaggt 901 cgctagcggt aacgagtcgg aagaaaagga tagtccgagg caaaatagct tcgaggaagg 961 aacttcaggc gataataata gcgataaaga tagtccgtcg aaagcttcaa attcttcaag 1021 ttcgactcca aagcggcctt attcgggttc agacaatcga agctccgaag aaaggacccc 1081 caagaggcga cgtcagtcag tttcagatag cgaggacaac cgccgaactt tatttactga 1141 ctcggaagat aaccccatta aacagaggag attaacttac cgtgaacaag tagaagccta 1201 tagacgtaga gttgacgccg gaagtacacc aggacggaag agttcatctt cagaagaaga 1261 accgccgccg ccttcgccac catttagata ttcggaatta tattgggagc agcggcgtgc 1321 ttcagacgcc gactctgaac ctgattccgc cttcaaatat agacctaatg cgaattatca 1381 ccgtacatca ccgcgaaatt atagtgacga agaggaagag gaggagatcc cagaaagcga 1441 taccgatcag aattcaggag gaccactagg ctatagggta gaaacccgta gtaccaatta 1501 cgagtcaagc gaaacgtcag aagacgaggc tcgcaggagg accgtgaggc gtgtagttcg 1561 ccggcgtcgt agaccacgca atcccgaaca tcgcgaacct gagtatcgcg gggaagagca 1621 aagtgagagt tcgccactac cgtccagtga atcccccgat cgccaagaca acagcgacga 1681 aaacgagagc gacgaagagg agaagcgggt tataccttca aggcgtcgca ctaccgacga 1741 tcagcagccc agcttctcag gctggggata tctaacgtgt cgtcaggacg cagactattt 1801 ctcggaaccc accgacggga agatcatcag gaagaggaag tcgccatttg aggaagaatc 1861 ctcgaatcaa tcaaagagac gaccatcaga agacaccgag agcgaagact ctgagaagga 1921 agactctgag aaggtagatt ctgagaagga agattctgag aaggaagatt ctgataaaga 1981 agattctgat aaagaagatt ctgataaaga agattctgat aaagaagatt ctgataaaga 2041 agattctgag aaagaagatt ctgagaaaga agattctgat aaagaagatt cggacaacgg 2101 aggttctgat accgagaagg aagatcgaaa taccgataaa cgcgattccg ataccgataa 2161 cgattccaat actgaagatc cgcaagatcc cagagattct caagattcgg cttctgacaa 2221 cgagcaggtt cccgattcta ctggggagcc cgaccaagac aacgagcagt ttcccgattc 2281 taccgaggag cccgaccaag acaacgagca gtttcccgat tctaccgagg agcccgacca 2341 agacaaggaa ctaggacaga ctgccgcttg gaccatcaca cccgatgatc ccaagggcat 2401 tcaagacttc caagacttcg tcctaaagca ggtgcaactg atcaatgaaa tcatcgaggt 2461 cggccatcaa gtattccaac tgggatcaat agtttgccat ggtgacttta cgttctttca 2521 aacactttac gagcggaaag ttccaataga agaggtcgtt gagctagtct accggggcat 2581 tctcggtgtc aaggaggagc tcagggtggc attgatagcc cgccaagatc taagcgagcc 2641 acattcgaaa gacatcatca ggccaggaga taaactagcc tatttaagat tggatttgtt 2701 caataaattt gtatcaaaag tcaatcagtc cgagaggatc gtggatcaac gccttcttga 2761 gctgcaggag gtacggaaac agcagggact actggagcag aagcagcgcg tcttggagag 2821 agtgcgccag cagcgggaac agcaccgcct gcagcagctt caggtggagc gggagcgtga 2881 ggagcgccag gaggaggagc agcggcgcct ggagctcgaa cgccacttgg agcgttggaa 2941 ggaggacttc aatcgccagc tgcgactgca gcgcgagcag gaggagatca agttgaggca 3001 agaggaggag aacaggaagc gagaagagga gcgcaggagc aactacgaca gctactactg 3061 ccaactgccg aagcacaagc accgcgagca gatgcaaaac gaaatggtca gcattccagt 3121 ggctaatttg aacggtggcc tcaaggcggc cagcagtgga tccggtggtg tggtcggtgt 3181 ggtcacctcc tccggcgttg tctcctcggc cgtgctggcc aatgcgccgc gtgtctatct 3241 gacgccctcc tccacattca tggccaatcg tggtcaggtg gcggcggggg cgggggccac 3301 cggaaagatt gcaggaggga gcaacgtaac ttcatccgtc ggcacatctt cggccaccgc 3361 cggcactgta cgctactttt cgcaattcag caaaatgcaa accgccggcg gacccagttt 3421 gcagcgtaaa ctggccaacg gcgacaccat tgtgctggcc aacggcaaca agagtctgtt 3481 cctcagcagc agtggaggcg ttggaggcga caaggccacc aatggcaata gtttgctaac 3541 ggccaaaacg gagcttctcg aggaggaagt catgcagccg ggaactgtga ttgtcgactg 3601 cgacgacgac gacgacgagg atgagaatga gaatgaggat gaggacgatg aagatgggga 3661 ggataaggat gagaagaaca acagccacac tgccaaatcc agtggggttc aacaggagca 3721 gccgttggct ttgaccaccg caaccaacaa tgcagccgcc tccgatgatg aacccgaact 3781 ggatattgtt attaataatg tggtatgctc cttcagcgtg ggctgccacc tcaagctgcg 3841 cgaaatcgct ctccagggct caaatgtcga gtaccgtcgt gagaacggta tggtgacaat 3901 gaagctccgc catccgtaca cgacggcatc catttggtcc tcgggcagga tcacgtgcac 3961 tggagccacc tccgaggcaa tggccaaggt tgcggctcgc cgctatgcga ggaccctggg 4021 caagctggga tttcccaccc gctttctcaa cttccggatc gtgaatgttc tgggcacctg 4081 cagcatgccc tgggccatca agatcgtcaa tttctcggag cgccatcgcg agaatgcgag 4141 ctacgagccc gagctgcacc cgggcgtgac ctacaagatg cgcgatcccg atcccaaggc 4201 cacgctcaag atcttctcca ccggcagcgt gaccgtgacg gcggccagcg ttagccacgt 4261 ggagtcggcc attcagcaca tttacccgct cgtctttgag ttccgcaagc agcgttcgct 4321 ggaggagctg cagcatctgc gccagaagca gcacaagcaa gcgggcggtg atcccagcga 4381 actggagaag ctgatcgttg cggagaacaa ggcggccgga ctggatgata tcttcctcaa 4441 cacaacggcg gcgcacacga agccctcgcc gaatgagcgt acgccggcca catcgggcat 4501 cctcacgagc accatcgata gcatgcagcg tttgaagcag atcgagaatt attctcacat 4561 gatgaagctg acgcaggagg agcgccgaca catacccttc cagggtgaga aggttaaccc 4621 ggcggcggct tctacttcgg cggcagctgc tgcttcgtcg ggggataata tctgtgccaa 4681 tgcccgtcgc cgggccaccg agtgctgggc caccaagctg cagtacaagc gtccgcgtta 4741 caatgatccc ggcaccacgg gcaccgtcaa tgcctcgtca acagccgcct cctcctcagc 4801 tgcctcgtca tcctcctcac aggcagcgcc acacctgcgt actaatcctc tcaagacggc 4861 cgctttggcc aatgcccgca tgcgtggcgc caaaatgcca acggtgctca agccgggcac 4921 gcgtctagcg cccatcggcg gtggctatct gcagcaccag cagcatctgc agcagcagca 4981 gcagctgcaa cagcagcagc agaagatgcg ccagaccagc ttctcgccca gcgagttcga 5041 tgtggacgat ttgatcgagg aggaggagag caacgagctg gacatgcagt attgagctag 5101 ccaagcagct gcccaagcca aaaaaacaca tttaaacatt aacatttaaa tgatgataat 5161 tcgatggaaa agaaaagcaa acagagagct tttccccgaa tttgttggca ctttgtttaa 5221 gccatttttc atcacaatac aaacacacac atttattttt gtgctcgccg catttaaaac 5281 acgaactcga ggaaaaccgg acgcaggagc gaaaacaaaa aaatatttaa aaacaaaaaa 5341 ggatgaaagg agaacatttt aatccaaagc gaaacaaaat tcccagcagc aacaccaact 5401 aaatagcagc agcaacaaca aaaccaagag ccaaatattt aacttataag atttacgttt 5461 aaacgacttt gtaacttaag cgagcacatc tgaaacaaac tagcagagtt agcatatagc 5521 gatgatttcg aacccgaagg attcccagca gcagcagcaa cctcaagaac atccagatgg 5581 taaacacaca gagagagctt accacaacgt aaacctaagt gtagacttaa agaaagcgtt 5641 atgaatacgt atatgccagc gttttacgta tgcaaccaaa aaaaacgaaa tgtgcggatt 5701 gctttgaagg aggaggagtt acaatctatt ttttttttac tcggtttaaa tagttaattt 5761 atgtgagcaa gaccaccgcc taagcaaata ctgtaaaccc gaatggatca catacgactt 5821 atatatatca agatagcctt tccctttttt tttgttgttt gaccaagacc aagttcttcc 5881 ggagcaaacc aaaattctca agaggaaagg agcagaggag gagaccagag aaaacactag 5941 gataatatta actgatttat ttcatgtatt ttcacacacc catttaataa ttttttttgt 6001 tttcgctcgt aagttctaga tgctataagc gttgcttcat gtgaagcaaa acaaacaaaa 6061 acatttgaat acgattataa ttatattata ataccaacac acacacaaac acctatatct 6121 ggtcactaat aaccaattat aacaaaactg aaaatacagc aagtaattat gttttaattt 6181 atgctagtag tttttgggtt gcgcagaaga acactcaatc gaattaggaa taaacacctg 6241 gatgatagaa gattgttgta gggtttattt ttaaagcaac caggtgaatg cgcgacttga 6301 aactattatc agacgatgta tacctaatgc atatattcgt atatatacta taaaatatat 6361 taatgttttt tttttatgta attcgcatta ttcgcataat ttaatgacaa atttagagga 6421 agcaacttta agcgtagatt tacaaacttg ttcctgtgtt gttaaaatca gaaagtaaag 6481 aacttatttt agttaacgaa acttaacgaa gcatacgcat acacaaacac tcacacacac 6541 acacacatta acacaagcat acgtatacat atacataatg ttaaggcatc caaacaaagc 6601 aacaaacaaa caaacaaaag agcgaatcat aagcaataat agaatgtttt cgttgtaaag 6661 aggtaaaaac taaacaaaca aatactcacg ttaaacataa aaaataaact ctagatgttt 6721 tggcgtgcct tcacccgtaa ataggaaaaa caaaaagcga gatacgatag ccaattgtac 6781 aatcattgaa atagtacttc cagaccagaa cgaacccaaa actctttgta catagaccca 6841 aaattgatgt tttccaattg aacgtgaata ttgcctcatc aacttgaaat ttcttttgtg 6901 cttaacgtaa aaaccaactt tcatatcgtt caaaacttat gcataatcaa aatagctaaa 6961 acaaacaaaa gagatgggga atatttaaga gacgtaatat catatatttt tttttatatt 7021 ttttttattt tgtattctgt ctttctttga taatttatat tttgatttgc ataaacaaaa 7081 tcgagaaatg aaaatgcctt tagggaacaa ataactagcg cggaaaggaa agagagggga 7141 gataggttta ggtattgaga aagcgagaga tagagagaag gatattgaac agatcaattg 7201 gagccgaaat gtattttttt gtgtatgcga atgtggatag agatagtagg gataggaata 7261 ggtctcgaga cagacccgaa cgtgttacaa ttgcaaaatt aactagccac taagccactt 7321 agccctaagt tagctgagaa acggaatact aaattgtaag ccaaaatgca tatagcaatc 7381 taacaaaaaa aacaaaatct aatggaacct aacgacgaga acctaaatgt aatctaaatg 7441 tacataaaat agttgttaac aaatcacaaa aaacaaacga aagcaagaaa ccaacaatag 7501 agtaaagtct tcacgtctaa ctgccttcga aaaaacaaaa agaaagatac agaaaaagaa 7561 aaagaaagga aaatcggaag tattctattc taaacaccga ctgtaaattg cttgtacttt 7621 caccacattt tcttttttgt taaagcaacg acagcaacaa caacaacatt aatagaacag 7681 aacagacgga tcgaaaggcc taaataagtg tatttggttt caagaacttt aaaaaagcaa 7741 aactaaatat taatgatagt atacagatat atttttgatt attatgtatt taatgagaac 7801 aatgtaatga aaatgatgca agtatcgata tcgatatgat aactaagaga aaacaaattg 7861 agaaatcaaa tagcataatt ctgtttttgt tttgccgtaa agactgcatt ataccaacaa 7921 ttaattatat acaaaataat aataataata atattaataa atcaataact gataaatggc 7981 gagtaagcga gagctttgca ttgagcagag accaaaacgg atgaataaat atatatatat 8041 atattaaaac aaccagaaaa aatattctaa aaacgaatac aaaaaaaaaa acaaaacaaa 8101 caaatatgaa agaaaaacaa aaaacatgga aaacaaaacc aagaaacatt tatttattag 8161 atcctaagag aagtttcgct agcggagatc gagtcaggcc agagcggacc ttaaaggtac 8221 cccgcatccc agaacgaaaa gcaagatgaa attaccttac caaaacgtgg gcgagtctac 8281 aaaagtctat aatagggcga tagggagaat cggaataatt agagaactat cgtatgataa 8341 atcaattacc aactaactgg ctaacttata cccactaaga tttatagttc cccctaatcc 8401 ctgaaactag ttctaagtac ataagttgca agcgaaaaaa aaactaaaag ttagatttat 8461 acacaaaagg atatatacat catatatata tatatatgtg gagaaggagg aaggtttact 8521 ttggttttga gattgccgca tcttcacatc tcaagcaata cgtttgtata ccatttgtta 8581 ttccgaaacg cgacggtttt cgaaatcgcc agttttgggc gattcgaaac atcgaaacgt 8641 ttcgtagcta acacttggat atgaatattt aacaaaaagc cacacaaaca ttaacacgac 8701 aacaacaaca acactcattt gatgtattta gtttaacgtt tagcccctag tttcaagaaa 8761 aatcacacac gaaacaagaa aacgcaaaat tcgaggaacg tgaaaatgcc tttcctgaac 8821 tgcagtcaac actcaaatat atggcaacaa aaaaacaaca aaaatgagaa aagaaacaaa 8881 ccaaccaaat gaaagcaaat tgtttgaata aaaatcaaat tacataaa