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LOCUS XM_070218571 8989 bp mRNA linear INV 09-DEC-2024 factor 2 (Trf2), transcript variant X2, mRNA. ACCESSION XM_070218571 VERSION XM_070218571.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8989 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8989 /gene="Trf2" /note="TATA box binding protein-related factor 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:108070355" CDS 480..5156 /gene="Trf2" /codon_start=1 /product="uncharacterized protein Trf2 isoform X1" /protein_id="XP_070074672.1" /db_xref="GeneID:108070355" /translation="MKENEKIPSNLLEIMGIVLSKNSSDSGQRTSTSTSDVNEENRVS SFEPGRRLVLNEVSGEFAQERDTENTSSPSPRKEESNEESADSSDKENQYPNHRPSRA DDSRSPDSVAETENFKDSDVEIGANSVVLSESQIQHEQDESLVSDPLEEEEEKEHEEE VASGNESEEKDSPRQNSFEEGTSGDNNSDKDSPSKASNSSSSTPKRPYSGSDNRSSEE RTPKRRRQSVSDSEDNRRTLFTDSEDNPIKQRRLTYREQVEAYRRRVDAGSTPGRKSS SSEEEPPPPSPPFRYSELYWEQRRASDADSEPDSAFKYRPNANYHRTSPRNYSDEEEE EEIPESDTDQNSGGPLGYRVETRSTNYESSETSEDEARRRTVRRVVRRRRRPRNPEHR EPEYRGEEQSESSPLPSSESPDRQDNSDENESDEEEKRVIPSRRRTTDDQQPSFSGWG YLTCRQDADYFSEPTDGKIIRKRKSPFEEESSNQSKRRPSEDTESEDSEKEDSEKVDS EKEDSEKEDSDKEDSDKEDSDKEDSDKEDSDKEDSEKEDSEKEDSDKEDSDNGGSDTE KEDRNTDKRDSDTDNDSNTEDPQDPRDSQDSASDNEQVPDSTGEPDQDNEQFPDSTEE PDQDNEQFPDSTEEPDQDKELGQTAAWTITPDDPKGIQDFQDFVLKQVQLINEIIEVG HQVFQLGSIVCHGDFTFFQTLYERKVPIEEVVELVYRGILGVKEELRVALIARQDLSE PHSKDIIRPGDKLAYLRLDLFNKFVSKVNQSERIVDQRLLELQEVRKQQGLLEQKQRV LERVRQQREQHRLQQLQVEREREERQEEEQRRLELERHLERWKEDFNRQLRLQREQEE IKLRQEEENRKREEERRSNYDSYYCQLPKHKHREQMQNEMVSIPVANLNGGLKAASSG SGGVVGVVTSSGVVSSAVLANAPRVYLTPSSTFMANRGQVAAGAGATGKIAGGSNVTS SVGTSSATAGTVRYFSQFSKMQTAGGPSLQRKLANGDTIVLANGNKSLFLSSSGGVGG DKATNGNSLLTAKTELLEEEVMQPGTVIVDCDDDDDEDENENEDEDDEDGEDKDEKNN SHTAKSSGVQQEQPLALTTATNNAAASDDEPELDIVINNVVCSFSVGCHLKLREIALQ GSNVEYRRENGMVTMKLRHPYTTASIWSSGRITCTGATSEAMAKVAARRYARTLGKLG FPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYEPELHPGVTYKMRDPDPKAT LKIFSTGSVTVTAASVSHVESAIQHIYPLVFEFRKQRSLEELQHLRQKQHKQAGGDPS ELEKLIVAENKAAGLDDIFLNTTAAHTKPSPNERTPATSGILTSTIDSMQRLKQIENY SHMMKLTQEERRHIPFQGEKVNPAAASTSAAAAASSGDNICANARRRATECWATKLQY KRPRYNDPGTTGTVNASSTAASSSAASSSSSQAAPHLRTNPLKTAALANARMRGAKMP TVLKPGTRLAPIGGGYLQHQQHLQQQQQLQQQQQKMRQTSFSPSEFDVDDLIEEEESN ELDMQY" misc_feature <1848..2411 /gene="Trf2" /note="MSCRAMM family adhesin clumping factor ClfA; Region: MSCRAMM_ClfA; NF033609" /db_xref="CDD:468110" misc_feature 3840..4361 /gene="Trf2" /note="TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the...; Region: TLF; cd04517" /db_xref="CDD:239953" misc_feature order(3855..3860,3864..3866,3942..3947,3957..3959, 3963..3965,3984..3986,3990..3992,4002..4004,4008..4010, 4014..4016,4020..4022,4110..4112,4125..4127,4131..4133, 4218..4223,4236..4238,4275..4277,4281..4283,4287..4289, 4299..4301) /gene="Trf2" /note="putative DNA interaction surface [nucleotide binding]; other site" /db_xref="CDD:239953" misc_feature order(3900..3902,3921..3929,3933..3935,3945..3947, 3963..3965,3969..3971) /gene="Trf2" /note="putative TFIIA interaction surface [polypeptide binding]; other site" /db_xref="CDD:239953" misc_feature order(4161..4166,4200..4214,4221..4223,4236..4238) /gene="Trf2" /note="putative TFIIB interaction surface [polypeptide binding]; other site" /db_xref="CDD:239953" polyA_site 8989 /gene="Trf2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tagatttgag acctacaata gtcagttgaa caaaagtagt tgaactgtga agacaagaat 61 atttttgtgc ataaaaaaag gctctccaag gaagaaagga taaaagaaga aacaaccatt 121 caaatattta aggactttta agagactgca aaggaacaac aaaaactaca agctaattta 181 aataggagaa agaacggaag actagacata atcgtaatac agagtagttt agcattaggg 241 aaccgacaac aacaaaaacc actgcaaaca ctaattctaa ttcaaaatta cactaaaaga 301 gtattttttc agccctaaga gcaaacacac acacacatac acaccacaca cacaaacgaa 361 agaagaagaa tttgtagaag aatcactttt agccttatat acaactacaa agaaaaaaaa 421 aagaacgcaa gttagtatta agttaagatg ctagaaagag aggacgtagc aagaatccta 481 tgaaagaaaa cgagaagatt ccaagtaatt tgcttgaaat catggggatt gttctcagta 541 aaaacagcag cgattccggg caaaggactt cgacttcgac ttctgacgtg aatgaagaaa 601 acagggtatc ttcattcgag ccagggcgtc gtcttgtctt aaacgaagta agcggagaat 661 tcgctcaaga aagagacacc gagaacacaa gttccccgtc gccacgcaag gaagaaagca 721 acgaagaatc agcagattct tcggataagg agaatcaata cccgaatcat cgtccttcaa 781 gggcagacga tagtagatct ccggattctg tcgcggaaac tgaaaacttt aaggattctg 841 acgttgaaat cggcgcaaac tcggtagtac tttctgaatc ccaaattcag cacgaacagg 901 acgaatcatt agtatctgat cctctcgaag aagaagaaga aaaagaacac gaagaagagg 961 tcgctagcgg taacgagtcg gaagaaaagg atagtccgag gcaaaatagc ttcgaggaag 1021 gaacttcagg cgataataat agcgataaag atagtccgtc gaaagcttca aattcttcaa 1081 gttcgactcc aaagcggcct tattcgggtt cagacaatcg aagctccgaa gaaaggaccc 1141 ccaagaggcg acgtcagtca gtttcagata gcgaggacaa ccgccgaact ttatttactg 1201 actcggaaga taaccccatt aaacagagga gattaactta ccgtgaacaa gtagaagcct 1261 atagacgtag agttgacgcc ggaagtacac caggacggaa gagttcatct tcagaagaag 1321 aaccgccgcc gccttcgcca ccatttagat attcggaatt atattgggag cagcggcgtg 1381 cttcagacgc cgactctgaa cctgattccg ccttcaaata tagacctaat gcgaattatc 1441 accgtacatc accgcgaaat tatagtgacg aagaggaaga ggaggagatc ccagaaagcg 1501 ataccgatca gaattcagga ggaccactag gctatagggt agaaacccgt agtaccaatt 1561 acgagtcaag cgaaacgtca gaagacgagg ctcgcaggag gaccgtgagg cgtgtagttc 1621 gccggcgtcg tagaccacgc aatcccgaac atcgcgaacc tgagtatcgc ggggaagagc 1681 aaagtgagag ttcgccacta ccgtccagtg aatcccccga tcgccaagac aacagcgacg 1741 aaaacgagag cgacgaagag gagaagcggg ttataccttc aaggcgtcgc actaccgacg 1801 atcagcagcc cagcttctca ggctggggat atctaacgtg tcgtcaggac gcagactatt 1861 tctcggaacc caccgacggg aagatcatca ggaagaggaa gtcgccattt gaggaagaat 1921 cctcgaatca atcaaagaga cgaccatcag aagacaccga gagcgaagac tctgagaagg 1981 aagactctga gaaggtagat tctgagaagg aagattctga gaaggaagat tctgataaag 2041 aagattctga taaagaagat tctgataaag aagattctga taaagaagat tctgataaag 2101 aagattctga gaaagaagat tctgagaaag aagattctga taaagaagat tcggacaacg 2161 gaggttctga taccgagaag gaagatcgaa ataccgataa acgcgattcc gataccgata 2221 acgattccaa tactgaagat ccgcaagatc ccagagattc tcaagattcg gcttctgaca 2281 acgagcaggt tcccgattct actggggagc ccgaccaaga caacgagcag tttcccgatt 2341 ctaccgagga gcccgaccaa gacaacgagc agtttcccga ttctaccgag gagcccgacc 2401 aagacaagga actaggacag actgccgctt ggaccatcac acccgatgat cccaagggca 2461 ttcaagactt ccaagacttc gtcctaaagc aggtgcaact gatcaatgaa atcatcgagg 2521 tcggccatca agtattccaa ctgggatcaa tagtttgcca tggtgacttt acgttctttc 2581 aaacacttta cgagcggaaa gttccaatag aagaggtcgt tgagctagtc taccggggca 2641 ttctcggtgt caaggaggag ctcagggtgg cattgatagc ccgccaagat ctaagcgagc 2701 cacattcgaa agacatcatc aggccaggag ataaactagc ctatttaaga ttggatttgt 2761 tcaataaatt tgtatcaaaa gtcaatcagt ccgagaggat cgtggatcaa cgccttcttg 2821 agctgcagga ggtacggaaa cagcagggac tactggagca gaagcagcgc gtcttggaga 2881 gagtgcgcca gcagcgggaa cagcaccgcc tgcagcagct tcaggtggag cgggagcgtg 2941 aggagcgcca ggaggaggag cagcggcgcc tggagctcga acgccacttg gagcgttgga 3001 aggaggactt caatcgccag ctgcgactgc agcgcgagca ggaggagatc aagttgaggc 3061 aagaggagga gaacaggaag cgagaagagg agcgcaggag caactacgac agctactact 3121 gccaactgcc gaagcacaag caccgcgagc agatgcaaaa cgaaatggtc agcattccag 3181 tggctaattt gaacggtggc ctcaaggcgg ccagcagtgg atccggtggt gtggtcggtg 3241 tggtcacctc ctccggcgtt gtctcctcgg ccgtgctggc caatgcgccg cgtgtctatc 3301 tgacgccctc ctccacattc atggccaatc gtggtcaggt ggcggcgggg gcgggggcca 3361 ccggaaagat tgcaggaggg agcaacgtaa cttcatccgt cggcacatct tcggccaccg 3421 ccggcactgt acgctacttt tcgcaattca gcaaaatgca aaccgccggc ggacccagtt 3481 tgcagcgtaa actggccaac ggcgacacca ttgtgctggc caacggcaac aagagtctgt 3541 tcctcagcag cagtggaggc gttggaggcg acaaggccac caatggcaat agtttgctaa 3601 cggccaaaac ggagcttctc gaggaggaag tcatgcagcc gggaactgtg attgtcgact 3661 gcgacgacga cgacgacgag gatgagaatg agaatgagga tgaggacgat gaagatgggg 3721 aggataagga tgagaagaac aacagccaca ctgccaaatc cagtggggtt caacaggagc 3781 agccgttggc tttgaccacc gcaaccaaca atgcagccgc ctccgatgat gaacccgaac 3841 tggatattgt tattaataat gtggtatgct ccttcagcgt gggctgccac ctcaagctgc 3901 gcgaaatcgc tctccagggc tcaaatgtcg agtaccgtcg tgagaacggt atggtgacaa 3961 tgaagctccg ccatccgtac acgacggcat ccatttggtc ctcgggcagg atcacgtgca 4021 ctggagccac ctccgaggca atggccaagg ttgcggctcg ccgctatgcg aggaccctgg 4081 gcaagctggg atttcccacc cgctttctca acttccggat cgtgaatgtt ctgggcacct 4141 gcagcatgcc ctgggccatc aagatcgtca atttctcgga gcgccatcgc gagaatgcga 4201 gctacgagcc cgagctgcac ccgggcgtga cctacaagat gcgcgatccc gatcccaagg 4261 ccacgctcaa gatcttctcc accggcagcg tgaccgtgac ggcggccagc gttagccacg 4321 tggagtcggc cattcagcac atttacccgc tcgtctttga gttccgcaag cagcgttcgc 4381 tggaggagct gcagcatctg cgccagaagc agcacaagca agcgggcggt gatcccagcg 4441 aactggagaa gctgatcgtt gcggagaaca aggcggccgg actggatgat atcttcctca 4501 acacaacggc ggcgcacacg aagccctcgc cgaatgagcg tacgccggcc acatcgggca 4561 tcctcacgag caccatcgat agcatgcagc gtttgaagca gatcgagaat tattctcaca 4621 tgatgaagct gacgcaggag gagcgccgac acataccctt ccagggtgag aaggttaacc 4681 cggcggcggc ttctacttcg gcggcagctg ctgcttcgtc gggggataat atctgtgcca 4741 atgcccgtcg ccgggccacc gagtgctggg ccaccaagct gcagtacaag cgtccgcgtt 4801 acaatgatcc cggcaccacg ggcaccgtca atgcctcgtc aacagccgcc tcctcctcag 4861 ctgcctcgtc atcctcctca caggcagcgc cacacctgcg tactaatcct ctcaagacgg 4921 ccgctttggc caatgcccgc atgcgtggcg ccaaaatgcc aacggtgctc aagccgggca 4981 cgcgtctagc gcccatcggc ggtggctatc tgcagcacca gcagcatctg cagcagcagc 5041 agcagctgca acagcagcag cagaagatgc gccagaccag cttctcgccc agcgagttcg 5101 atgtggacga tttgatcgag gaggaggaga gcaacgagct ggacatgcag tattgagcta 5161 gccaagcagc tgcccaagcc aaaaaaacac atttaaacat taacatttaa atgatgataa 5221 ttcgatggaa aagaaaagca aacagagagc ttttccccga atttgttggc actttgttta 5281 agccattttt catcacaata caaacacaca catttatttt tgtgctcgcc gcatttaaaa 5341 cacgaactcg aggaaaaccg gacgcaggag cgaaaacaaa aaaatattta aaaacaaaaa 5401 aggatgaaag gagaacattt taatccaaag cgaaacaaaa ttcccagcag caacaccaac 5461 taaatagcag cagcaacaac aaaaccaaga gccaaatatt taacttataa gatttacgtt 5521 taaacgactt tgtaacttaa gcgagcacat ctgaaacaaa ctagcagagt tagcatatag 5581 cgatgatttc gaacccgaag gattcccagc agcagcagca acctcaagaa catccagatg 5641 gtaaacacac agagagagct taccacaacg taaacctaag tgtagactta aagaaagcgt 5701 tatgaatacg tatatgccag cgttttacgt atgcaaccaa aaaaaacgaa atgtgcggat 5761 tgctttgaag gaggaggagt tacaatctat ttttttttta ctcggtttaa atagttaatt 5821 tatgtgagca agaccaccgc ctaagcaaat actgtaaacc cgaatggatc acatacgact 5881 tatatatatc aagatagcct ttcccttttt ttttgttgtt tgaccaagac caagttcttc 5941 cggagcaaac caaaattctc aagaggaaag gagcagagga ggagaccaga gaaaacacta 6001 ggataatatt aactgattta tttcatgtat tttcacacac ccatttaata attttttttg 6061 ttttcgctcg taagttctag atgctataag cgttgcttca tgtgaagcaa aacaaacaaa 6121 aacatttgaa tacgattata attatattat aataccaaca cacacacaaa cacctatatc 6181 tggtcactaa taaccaatta taacaaaact gaaaatacag caagtaatta tgttttaatt 6241 tatgctagta gtttttgggt tgcgcagaag aacactcaat cgaattagga ataaacacct 6301 ggatgataga agattgttgt agggtttatt tttaaagcaa ccaggtgaat gcgcgacttg 6361 aaactattat cagacgatgt atacctaatg catatattcg tatatatact ataaaatata 6421 ttaatgtttt ttttttatgt aattcgcatt attcgcataa tttaatgaca aatttagagg 6481 aagcaacttt aagcgtagat ttacaaactt gttcctgtgt tgttaaaatc agaaagtaaa 6541 gaacttattt tagttaacga aacttaacga agcatacgca tacacaaaca ctcacacaca 6601 cacacacatt aacacaagca tacgtataca tatacataat gttaaggcat ccaaacaaag 6661 caacaaacaa acaaacaaaa gagcgaatca taagcaataa tagaatgttt tcgttgtaaa 6721 gaggtaaaaa ctaaacaaac aaatactcac gttaaacata aaaaataaac tctagatgtt 6781 ttggcgtgcc ttcacccgta aataggaaaa acaaaaagcg agatacgata gccaattgta 6841 caatcattga aatagtactt ccagaccaga acgaacccaa aactctttgt acatagaccc 6901 aaaattgatg ttttccaatt gaacgtgaat attgcctcat caacttgaaa tttcttttgt 6961 gcttaacgta aaaaccaact ttcatatcgt tcaaaactta tgcataatca aaatagctaa 7021 aacaaacaaa agagatgggg aatatttaag agacgtaata tcatatattt ttttttatat 7081 tttttttatt ttgtattctg tctttctttg ataatttata ttttgatttg cataaacaaa 7141 atcgagaaat gaaaatgcct ttagggaaca aataactagc gcggaaagga aagagagggg 7201 agataggttt aggtattgag aaagcgagag atagagagaa ggatattgaa cagatcaatt 7261 ggagccgaaa tgtatttttt tgtgtatgcg aatgtggata gagatagtag ggataggaat 7321 aggtctcgag acagacccga acgtgttaca attgcaaaat taactagcca ctaagccact 7381 tagccctaag ttagctgaga aacggaatac taaattgtaa gccaaaatgc atatagcaat 7441 ctaacaaaaa aaacaaaatc taatggaacc taacgacgag aacctaaatg taatctaaat 7501 gtacataaaa tagttgttaa caaatcacaa aaaacaaacg aaagcaagaa accaacaata 7561 gagtaaagtc ttcacgtcta actgccttcg aaaaaacaaa aagaaagata cagaaaaaga 7621 aaaagaaagg aaaatcggaa gtattctatt ctaaacaccg actgtaaatt gcttgtactt 7681 tcaccacatt ttcttttttg ttaaagcaac gacagcaaca acaacaacat taatagaaca 7741 gaacagacgg atcgaaaggc ctaaataagt gtatttggtt tcaagaactt taaaaaagca 7801 aaactaaata ttaatgatag tatacagata tatttttgat tattatgtat ttaatgagaa 7861 caatgtaatg aaaatgatgc aagtatcgat atcgatatga taactaagag aaaacaaatt 7921 gagaaatcaa atagcataat tctgtttttg ttttgccgta aagactgcat tataccaaca 7981 attaattata tacaaaataa taataataat aatattaata aatcaataac tgataaatgg 8041 cgagtaagcg agagctttgc attgagcaga gaccaaaacg gatgaataaa tatatatata 8101 tatattaaaa caaccagaaa aaatattcta aaaacgaata caaaaaaaaa aacaaaacaa 8161 acaaatatga aagaaaaaca aaaaacatgg aaaacaaaac caagaaacat ttatttatta 8221 gatcctaaga gaagtttcgc tagcggagat cgagtcaggc cagagcggac cttaaaggta 8281 ccccgcatcc cagaacgaaa agcaagatga aattacctta ccaaaacgtg ggcgagtcta 8341 caaaagtcta taatagggcg atagggagaa tcggaataat tagagaacta tcgtatgata 8401 aatcaattac caactaactg gctaacttat acccactaag atttatagtt ccccctaatc 8461 cctgaaacta gttctaagta cataagttgc aagcgaaaaa aaaactaaaa gttagattta 8521 tacacaaaag gatatataca tcatatatat atatatatgt ggagaaggag gaaggtttac 8581 tttggttttg agattgccgc atcttcacat ctcaagcaat acgtttgtat accatttgtt 8641 attccgaaac gcgacggttt tcgaaatcgc cagttttggg cgattcgaaa catcgaaacg 8701 tttcgtagct aacacttgga tatgaatatt taacaaaaag ccacacaaac attaacacga 8761 caacaacaac aacactcatt tgatgtattt agtttaacgt ttagccccta gtttcaagaa 8821 aaatcacaca cgaaacaaga aaacgcaaaa ttcgaggaac gtgaaaatgc ctttcctgaa 8881 ctgcagtcaa cactcaaata tatggcaaca aaaaaacaac aaaaatgaga aaagaaacaa 8941 accaaccaaa tgaaagcaaa ttgtttgaat aaaaatcaaa ttacataaa