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LOCUS XM_070218570 9049 bp mRNA linear INV 09-DEC-2024 factor 2 (Trf2), transcript variant X1, mRNA. ACCESSION XM_070218570 VERSION XM_070218570.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..9049 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..9049 /gene="Trf2" /note="TATA box binding protein-related factor 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:108070355" CDS 540..5216 /gene="Trf2" /codon_start=1 /product="uncharacterized protein Trf2 isoform X1" /protein_id="XP_070074671.1" /db_xref="GeneID:108070355" /translation="MKENEKIPSNLLEIMGIVLSKNSSDSGQRTSTSTSDVNEENRVS SFEPGRRLVLNEVSGEFAQERDTENTSSPSPRKEESNEESADSSDKENQYPNHRPSRA DDSRSPDSVAETENFKDSDVEIGANSVVLSESQIQHEQDESLVSDPLEEEEEKEHEEE VASGNESEEKDSPRQNSFEEGTSGDNNSDKDSPSKASNSSSSTPKRPYSGSDNRSSEE RTPKRRRQSVSDSEDNRRTLFTDSEDNPIKQRRLTYREQVEAYRRRVDAGSTPGRKSS SSEEEPPPPSPPFRYSELYWEQRRASDADSEPDSAFKYRPNANYHRTSPRNYSDEEEE EEIPESDTDQNSGGPLGYRVETRSTNYESSETSEDEARRRTVRRVVRRRRRPRNPEHR EPEYRGEEQSESSPLPSSESPDRQDNSDENESDEEEKRVIPSRRRTTDDQQPSFSGWG YLTCRQDADYFSEPTDGKIIRKRKSPFEEESSNQSKRRPSEDTESEDSEKEDSEKVDS EKEDSEKEDSDKEDSDKEDSDKEDSDKEDSDKEDSEKEDSEKEDSDKEDSDNGGSDTE KEDRNTDKRDSDTDNDSNTEDPQDPRDSQDSASDNEQVPDSTGEPDQDNEQFPDSTEE PDQDNEQFPDSTEEPDQDKELGQTAAWTITPDDPKGIQDFQDFVLKQVQLINEIIEVG HQVFQLGSIVCHGDFTFFQTLYERKVPIEEVVELVYRGILGVKEELRVALIARQDLSE PHSKDIIRPGDKLAYLRLDLFNKFVSKVNQSERIVDQRLLELQEVRKQQGLLEQKQRV LERVRQQREQHRLQQLQVEREREERQEEEQRRLELERHLERWKEDFNRQLRLQREQEE IKLRQEEENRKREEERRSNYDSYYCQLPKHKHREQMQNEMVSIPVANLNGGLKAASSG SGGVVGVVTSSGVVSSAVLANAPRVYLTPSSTFMANRGQVAAGAGATGKIAGGSNVTS SVGTSSATAGTVRYFSQFSKMQTAGGPSLQRKLANGDTIVLANGNKSLFLSSSGGVGG DKATNGNSLLTAKTELLEEEVMQPGTVIVDCDDDDDEDENENEDEDDEDGEDKDEKNN SHTAKSSGVQQEQPLALTTATNNAAASDDEPELDIVINNVVCSFSVGCHLKLREIALQ GSNVEYRRENGMVTMKLRHPYTTASIWSSGRITCTGATSEAMAKVAARRYARTLGKLG FPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYEPELHPGVTYKMRDPDPKAT LKIFSTGSVTVTAASVSHVESAIQHIYPLVFEFRKQRSLEELQHLRQKQHKQAGGDPS ELEKLIVAENKAAGLDDIFLNTTAAHTKPSPNERTPATSGILTSTIDSMQRLKQIENY SHMMKLTQEERRHIPFQGEKVNPAAASTSAAAAASSGDNICANARRRATECWATKLQY KRPRYNDPGTTGTVNASSTAASSSAASSSSSQAAPHLRTNPLKTAALANARMRGAKMP TVLKPGTRLAPIGGGYLQHQQHLQQQQQLQQQQQKMRQTSFSPSEFDVDDLIEEEESN ELDMQY" misc_feature <1908..2471 /gene="Trf2" /note="MSCRAMM family adhesin clumping factor ClfA; Region: MSCRAMM_ClfA; NF033609" /db_xref="CDD:468110" misc_feature 3900..4421 /gene="Trf2" /note="TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the...; Region: TLF; cd04517" /db_xref="CDD:239953" misc_feature order(3915..3920,3924..3926,4002..4007,4017..4019, 4023..4025,4044..4046,4050..4052,4062..4064,4068..4070, 4074..4076,4080..4082,4170..4172,4185..4187,4191..4193, 4278..4283,4296..4298,4335..4337,4341..4343,4347..4349, 4359..4361) /gene="Trf2" /note="putative DNA interaction surface [nucleotide binding]; other site" /db_xref="CDD:239953" misc_feature order(3960..3962,3981..3989,3993..3995,4005..4007, 4023..4025,4029..4031) /gene="Trf2" /note="putative TFIIA interaction surface [polypeptide binding]; other site" /db_xref="CDD:239953" misc_feature order(4221..4226,4260..4274,4281..4283,4296..4298) /gene="Trf2" /note="putative TFIIB interaction surface [polypeptide binding]; other site" /db_xref="CDD:239953" polyA_site 9049 /gene="Trf2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agccagcaag agagagggag agcagcagca gcagcgcggc ggcggccaca gcaacaaagc 61 cacaaaagag agcgacggcg agagagacag agagagaggg ggagagaact agacgacgcg 121 acgacctact acaaaaaaag gctctccaag gaagaaagga taaaagaaga aacaaccatt 181 caaatattta aggactttta agagactgca aaggaacaac aaaaactaca agctaattta 241 aataggagaa agaacggaag actagacata atcgtaatac agagtagttt agcattaggg 301 aaccgacaac aacaaaaacc actgcaaaca ctaattctaa ttcaaaatta cactaaaaga 361 gtattttttc agccctaaga gcaaacacac acacacatac acaccacaca cacaaacgaa 421 agaagaagaa tttgtagaag aatcactttt agccttatat acaactacaa agaaaaaaaa 481 aagaacgcaa gttagtatta agttaagatg ctagaaagag aggacgtagc aagaatccta 541 tgaaagaaaa cgagaagatt ccaagtaatt tgcttgaaat catggggatt gttctcagta 601 aaaacagcag cgattccggg caaaggactt cgacttcgac ttctgacgtg aatgaagaaa 661 acagggtatc ttcattcgag ccagggcgtc gtcttgtctt aaacgaagta agcggagaat 721 tcgctcaaga aagagacacc gagaacacaa gttccccgtc gccacgcaag gaagaaagca 781 acgaagaatc agcagattct tcggataagg agaatcaata cccgaatcat cgtccttcaa 841 gggcagacga tagtagatct ccggattctg tcgcggaaac tgaaaacttt aaggattctg 901 acgttgaaat cggcgcaaac tcggtagtac tttctgaatc ccaaattcag cacgaacagg 961 acgaatcatt agtatctgat cctctcgaag aagaagaaga aaaagaacac gaagaagagg 1021 tcgctagcgg taacgagtcg gaagaaaagg atagtccgag gcaaaatagc ttcgaggaag 1081 gaacttcagg cgataataat agcgataaag atagtccgtc gaaagcttca aattcttcaa 1141 gttcgactcc aaagcggcct tattcgggtt cagacaatcg aagctccgaa gaaaggaccc 1201 ccaagaggcg acgtcagtca gtttcagata gcgaggacaa ccgccgaact ttatttactg 1261 actcggaaga taaccccatt aaacagagga gattaactta ccgtgaacaa gtagaagcct 1321 atagacgtag agttgacgcc ggaagtacac caggacggaa gagttcatct tcagaagaag 1381 aaccgccgcc gccttcgcca ccatttagat attcggaatt atattgggag cagcggcgtg 1441 cttcagacgc cgactctgaa cctgattccg ccttcaaata tagacctaat gcgaattatc 1501 accgtacatc accgcgaaat tatagtgacg aagaggaaga ggaggagatc ccagaaagcg 1561 ataccgatca gaattcagga ggaccactag gctatagggt agaaacccgt agtaccaatt 1621 acgagtcaag cgaaacgtca gaagacgagg ctcgcaggag gaccgtgagg cgtgtagttc 1681 gccggcgtcg tagaccacgc aatcccgaac atcgcgaacc tgagtatcgc ggggaagagc 1741 aaagtgagag ttcgccacta ccgtccagtg aatcccccga tcgccaagac aacagcgacg 1801 aaaacgagag cgacgaagag gagaagcggg ttataccttc aaggcgtcgc actaccgacg 1861 atcagcagcc cagcttctca ggctggggat atctaacgtg tcgtcaggac gcagactatt 1921 tctcggaacc caccgacggg aagatcatca ggaagaggaa gtcgccattt gaggaagaat 1981 cctcgaatca atcaaagaga cgaccatcag aagacaccga gagcgaagac tctgagaagg 2041 aagactctga gaaggtagat tctgagaagg aagattctga gaaggaagat tctgataaag 2101 aagattctga taaagaagat tctgataaag aagattctga taaagaagat tctgataaag 2161 aagattctga gaaagaagat tctgagaaag aagattctga taaagaagat tcggacaacg 2221 gaggttctga taccgagaag gaagatcgaa ataccgataa acgcgattcc gataccgata 2281 acgattccaa tactgaagat ccgcaagatc ccagagattc tcaagattcg gcttctgaca 2341 acgagcaggt tcccgattct actggggagc ccgaccaaga caacgagcag tttcccgatt 2401 ctaccgagga gcccgaccaa gacaacgagc agtttcccga ttctaccgag gagcccgacc 2461 aagacaagga actaggacag actgccgctt ggaccatcac acccgatgat cccaagggca 2521 ttcaagactt ccaagacttc gtcctaaagc aggtgcaact gatcaatgaa atcatcgagg 2581 tcggccatca agtattccaa ctgggatcaa tagtttgcca tggtgacttt acgttctttc 2641 aaacacttta cgagcggaaa gttccaatag aagaggtcgt tgagctagtc taccggggca 2701 ttctcggtgt caaggaggag ctcagggtgg cattgatagc ccgccaagat ctaagcgagc 2761 cacattcgaa agacatcatc aggccaggag ataaactagc ctatttaaga ttggatttgt 2821 tcaataaatt tgtatcaaaa gtcaatcagt ccgagaggat cgtggatcaa cgccttcttg 2881 agctgcagga ggtacggaaa cagcagggac tactggagca gaagcagcgc gtcttggaga 2941 gagtgcgcca gcagcgggaa cagcaccgcc tgcagcagct tcaggtggag cgggagcgtg 3001 aggagcgcca ggaggaggag cagcggcgcc tggagctcga acgccacttg gagcgttgga 3061 aggaggactt caatcgccag ctgcgactgc agcgcgagca ggaggagatc aagttgaggc 3121 aagaggagga gaacaggaag cgagaagagg agcgcaggag caactacgac agctactact 3181 gccaactgcc gaagcacaag caccgcgagc agatgcaaaa cgaaatggtc agcattccag 3241 tggctaattt gaacggtggc ctcaaggcgg ccagcagtgg atccggtggt gtggtcggtg 3301 tggtcacctc ctccggcgtt gtctcctcgg ccgtgctggc caatgcgccg cgtgtctatc 3361 tgacgccctc ctccacattc atggccaatc gtggtcaggt ggcggcgggg gcgggggcca 3421 ccggaaagat tgcaggaggg agcaacgtaa cttcatccgt cggcacatct tcggccaccg 3481 ccggcactgt acgctacttt tcgcaattca gcaaaatgca aaccgccggc ggacccagtt 3541 tgcagcgtaa actggccaac ggcgacacca ttgtgctggc caacggcaac aagagtctgt 3601 tcctcagcag cagtggaggc gttggaggcg acaaggccac caatggcaat agtttgctaa 3661 cggccaaaac ggagcttctc gaggaggaag tcatgcagcc gggaactgtg attgtcgact 3721 gcgacgacga cgacgacgag gatgagaatg agaatgagga tgaggacgat gaagatgggg 3781 aggataagga tgagaagaac aacagccaca ctgccaaatc cagtggggtt caacaggagc 3841 agccgttggc tttgaccacc gcaaccaaca atgcagccgc ctccgatgat gaacccgaac 3901 tggatattgt tattaataat gtggtatgct ccttcagcgt gggctgccac ctcaagctgc 3961 gcgaaatcgc tctccagggc tcaaatgtcg agtaccgtcg tgagaacggt atggtgacaa 4021 tgaagctccg ccatccgtac acgacggcat ccatttggtc ctcgggcagg atcacgtgca 4081 ctggagccac ctccgaggca atggccaagg ttgcggctcg ccgctatgcg aggaccctgg 4141 gcaagctggg atttcccacc cgctttctca acttccggat cgtgaatgtt ctgggcacct 4201 gcagcatgcc ctgggccatc aagatcgtca atttctcgga gcgccatcgc gagaatgcga 4261 gctacgagcc cgagctgcac ccgggcgtga cctacaagat gcgcgatccc gatcccaagg 4321 ccacgctcaa gatcttctcc accggcagcg tgaccgtgac ggcggccagc gttagccacg 4381 tggagtcggc cattcagcac atttacccgc tcgtctttga gttccgcaag cagcgttcgc 4441 tggaggagct gcagcatctg cgccagaagc agcacaagca agcgggcggt gatcccagcg 4501 aactggagaa gctgatcgtt gcggagaaca aggcggccgg actggatgat atcttcctca 4561 acacaacggc ggcgcacacg aagccctcgc cgaatgagcg tacgccggcc acatcgggca 4621 tcctcacgag caccatcgat agcatgcagc gtttgaagca gatcgagaat tattctcaca 4681 tgatgaagct gacgcaggag gagcgccgac acataccctt ccagggtgag aaggttaacc 4741 cggcggcggc ttctacttcg gcggcagctg ctgcttcgtc gggggataat atctgtgcca 4801 atgcccgtcg ccgggccacc gagtgctggg ccaccaagct gcagtacaag cgtccgcgtt 4861 acaatgatcc cggcaccacg ggcaccgtca atgcctcgtc aacagccgcc tcctcctcag 4921 ctgcctcgtc atcctcctca caggcagcgc cacacctgcg tactaatcct ctcaagacgg 4981 ccgctttggc caatgcccgc atgcgtggcg ccaaaatgcc aacggtgctc aagccgggca 5041 cgcgtctagc gcccatcggc ggtggctatc tgcagcacca gcagcatctg cagcagcagc 5101 agcagctgca acagcagcag cagaagatgc gccagaccag cttctcgccc agcgagttcg 5161 atgtggacga tttgatcgag gaggaggaga gcaacgagct ggacatgcag tattgagcta 5221 gccaagcagc tgcccaagcc aaaaaaacac atttaaacat taacatttaa atgatgataa 5281 ttcgatggaa aagaaaagca aacagagagc ttttccccga atttgttggc actttgttta 5341 agccattttt catcacaata caaacacaca catttatttt tgtgctcgcc gcatttaaaa 5401 cacgaactcg aggaaaaccg gacgcaggag cgaaaacaaa aaaatattta aaaacaaaaa 5461 aggatgaaag gagaacattt taatccaaag cgaaacaaaa ttcccagcag caacaccaac 5521 taaatagcag cagcaacaac aaaaccaaga gccaaatatt taacttataa gatttacgtt 5581 taaacgactt tgtaacttaa gcgagcacat ctgaaacaaa ctagcagagt tagcatatag 5641 cgatgatttc gaacccgaag gattcccagc agcagcagca acctcaagaa catccagatg 5701 gtaaacacac agagagagct taccacaacg taaacctaag tgtagactta aagaaagcgt 5761 tatgaatacg tatatgccag cgttttacgt atgcaaccaa aaaaaacgaa atgtgcggat 5821 tgctttgaag gaggaggagt tacaatctat ttttttttta ctcggtttaa atagttaatt 5881 tatgtgagca agaccaccgc ctaagcaaat actgtaaacc cgaatggatc acatacgact 5941 tatatatatc aagatagcct ttcccttttt ttttgttgtt tgaccaagac caagttcttc 6001 cggagcaaac caaaattctc aagaggaaag gagcagagga ggagaccaga gaaaacacta 6061 ggataatatt aactgattta tttcatgtat tttcacacac ccatttaata attttttttg 6121 ttttcgctcg taagttctag atgctataag cgttgcttca tgtgaagcaa aacaaacaaa 6181 aacatttgaa tacgattata attatattat aataccaaca cacacacaaa cacctatatc 6241 tggtcactaa taaccaatta taacaaaact gaaaatacag caagtaatta tgttttaatt 6301 tatgctagta gtttttgggt tgcgcagaag aacactcaat cgaattagga ataaacacct 6361 ggatgataga agattgttgt agggtttatt tttaaagcaa ccaggtgaat gcgcgacttg 6421 aaactattat cagacgatgt atacctaatg catatattcg tatatatact ataaaatata 6481 ttaatgtttt ttttttatgt aattcgcatt attcgcataa tttaatgaca aatttagagg 6541 aagcaacttt aagcgtagat ttacaaactt gttcctgtgt tgttaaaatc agaaagtaaa 6601 gaacttattt tagttaacga aacttaacga agcatacgca tacacaaaca ctcacacaca 6661 cacacacatt aacacaagca tacgtataca tatacataat gttaaggcat ccaaacaaag 6721 caacaaacaa acaaacaaaa gagcgaatca taagcaataa tagaatgttt tcgttgtaaa 6781 gaggtaaaaa ctaaacaaac aaatactcac gttaaacata aaaaataaac tctagatgtt 6841 ttggcgtgcc ttcacccgta aataggaaaa acaaaaagcg agatacgata gccaattgta 6901 caatcattga aatagtactt ccagaccaga acgaacccaa aactctttgt acatagaccc 6961 aaaattgatg ttttccaatt gaacgtgaat attgcctcat caacttgaaa tttcttttgt 7021 gcttaacgta aaaaccaact ttcatatcgt tcaaaactta tgcataatca aaatagctaa 7081 aacaaacaaa agagatgggg aatatttaag agacgtaata tcatatattt ttttttatat 7141 tttttttatt ttgtattctg tctttctttg ataatttata ttttgatttg cataaacaaa 7201 atcgagaaat gaaaatgcct ttagggaaca aataactagc gcggaaagga aagagagggg 7261 agataggttt aggtattgag aaagcgagag atagagagaa ggatattgaa cagatcaatt 7321 ggagccgaaa tgtatttttt tgtgtatgcg aatgtggata gagatagtag ggataggaat 7381 aggtctcgag acagacccga acgtgttaca attgcaaaat taactagcca ctaagccact 7441 tagccctaag ttagctgaga aacggaatac taaattgtaa gccaaaatgc atatagcaat 7501 ctaacaaaaa aaacaaaatc taatggaacc taacgacgag aacctaaatg taatctaaat 7561 gtacataaaa tagttgttaa caaatcacaa aaaacaaacg aaagcaagaa accaacaata 7621 gagtaaagtc ttcacgtcta actgccttcg aaaaaacaaa aagaaagata cagaaaaaga 7681 aaaagaaagg aaaatcggaa gtattctatt ctaaacaccg actgtaaatt gcttgtactt 7741 tcaccacatt ttcttttttg ttaaagcaac gacagcaaca acaacaacat taatagaaca 7801 gaacagacgg atcgaaaggc ctaaataagt gtatttggtt tcaagaactt taaaaaagca 7861 aaactaaata ttaatgatag tatacagata tatttttgat tattatgtat ttaatgagaa 7921 caatgtaatg aaaatgatgc aagtatcgat atcgatatga taactaagag aaaacaaatt 7981 gagaaatcaa atagcataat tctgtttttg ttttgccgta aagactgcat tataccaaca 8041 attaattata tacaaaataa taataataat aatattaata aatcaataac tgataaatgg 8101 cgagtaagcg agagctttgc attgagcaga gaccaaaacg gatgaataaa tatatatata 8161 tatattaaaa caaccagaaa aaatattcta aaaacgaata caaaaaaaaa aacaaaacaa 8221 acaaatatga aagaaaaaca aaaaacatgg aaaacaaaac caagaaacat ttatttatta 8281 gatcctaaga gaagtttcgc tagcggagat cgagtcaggc cagagcggac cttaaaggta 8341 ccccgcatcc cagaacgaaa agcaagatga aattacctta ccaaaacgtg ggcgagtcta 8401 caaaagtcta taatagggcg atagggagaa tcggaataat tagagaacta tcgtatgata 8461 aatcaattac caactaactg gctaacttat acccactaag atttatagtt ccccctaatc 8521 cctgaaacta gttctaagta cataagttgc aagcgaaaaa aaaactaaaa gttagattta 8581 tacacaaaag gatatataca tcatatatat atatatatgt ggagaaggag gaaggtttac 8641 tttggttttg agattgccgc atcttcacat ctcaagcaat acgtttgtat accatttgtt 8701 attccgaaac gcgacggttt tcgaaatcgc cagttttggg cgattcgaaa catcgaaacg 8761 tttcgtagct aacacttgga tatgaatatt taacaaaaag ccacacaaac attaacacga 8821 caacaacaac aacactcatt tgatgtattt agtttaacgt ttagccccta gtttcaagaa 8881 aaatcacaca cgaaacaaga aaacgcaaaa ttcgaggaac gtgaaaatgc ctttcctgaa 8941 ctgcagtcaa cactcaaata tatggcaaca aaaaaacaac aaaaatgaga aaagaaacaa 9001 accaaccaaa tgaaagcaaa ttgtttgaat aaaaatcaaa ttacataaa