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LOCUS XM_070218566 4268 bp mRNA linear INV 09-DEC-2024 variant X3, mRNA. ACCESSION XM_070218566 VERSION XM_070218566.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4268 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4268 /gene="fne" /note="found in neurons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins" /db_xref="GeneID:108056446" CDS 2060..3130 /gene="fne" /codon_start=1 /product="ELAV-like protein 1 isoform X1" /protein_id="XP_070074667.1" /db_xref="GeneID:108056446" /translation="MTNAMDIVKNGSANGSVDGSNDESRTNLIVNYLPQTMTQEEMRS LFSSIGELESCKLVRDKVSGNLVLPASLTALNPALQQGQSLGYGFVNYVRAEDAEKAV NTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLSQPDLEGMFASFGKIITSR ILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKTPKGYAEPITVKFANNPSNSAKAQ IAPPLTAYLTPQAAAATRRLAGALPSAGRIRYSPLAGDLLANSILPGNAMTGSGWCIF VYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL NGYTLGNRVLQVSFKTNKTKTT" misc_feature 2126..3121 /gene="fne" /note="ELAV/HuD family splicing factor; Region: ELAV_HUD_SF; TIGR01661" /db_xref="CDD:273741" polyA_site 4268 /gene="fne" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttaccaacaa aaaatcaagt attaggcaaa agtttaacga tcgactagga ggacgtagaa 61 gaaggcggag gagcaccgaa gaacacaact agagaaatat tcctggcaag gaccgccgtt 121 gtcctgcctg tcagtcagtc accaattcag agcgtattaa cacaaaagtc tgctggcagc 181 aatcaacttc aagccaaaat tattattcaa aatctcaaca aaaaaaaaga aatcgttaaa 241 cgaagaaatt gcattcaact atcatcacaa ctttccaatg tttctttttc gtgttgttga 301 ctgatataaa gataaaagac caaaatcgtt aaggaaaagc aattctccca cacaactaag 361 tatattaaaa taataataaa cgagtataaa gttattaatt tttattcaat catcaatttg 421 atttgggtaa atgtgcgcta gctagaatca taaatatata tatagtcgga taacatttga 481 ttaccttcgt cggtgagtgt ctagccaatc aatctatagc ctataggaac catatatacc 541 acaaggtttt atactgaatt tataaaattt tgggtgaggg cgcagtgcgc atcgaaaggc 601 ccatcaaagg catcaacacc aaaactcaat ataaactaac aaaaatacca taagcaagtg 661 tttttttgtc gcaaataaat aaatttacat atttacacat aaaagaagga gaagaaaaga 721 agttaaacaa aagtaatatt aaaataaaga cttgaatttc tcaaagaaat aaatatttat 781 acaagaacaa gcgaagaata agaaaaaata agaaaaacgg acttccaacg atttcaaaat 841 acgacgaaat atttttagag caaagaccct gcaacaaact atgataacaa aaacaatgca 901 aatcggttaa caaaatattt gccaaatcta tgtatgaatc aaaaaatcta acaaataaaa 961 cggaaacgga attaacgcat acttaatgag aaatcgaacg tcgagctaca agaatttata 1021 ctaaaaacca ggaataaagc aaagaaattg aggagaacaa agagggacaa gcgagtggaa 1081 aatcgagatc aacagagatc agctgtaaag tgatatttta taaaaaccga aaatatcagt 1141 taaggacaac gacttataag attgagtgaa aacgagcgag caatcgaaca gccatcattt 1201 atcagagaaa agacacggat caccggcaaa aaaggaagat ttttaaactg aagaggaaaa 1261 agctaagaaa cgaggcaaaa gaaaatagga gaagtaaagg agaagtaaac caaaaccaaa 1321 caccaccaaa taaaaccaac tactataaat ttaaagcaaa cataaacgaa taatcatatt 1381 caagcggtat atatatatac aagaggataa cggataacac aactaactat atatatatac 1441 gatatatgaa tgtatatttg aaaaccaaag ctaagttcca gtcaaagaga aaaaccaaaa 1501 accaaaaacc agcgcaaatt tagtaaaagt ataaagtaaa agggaaaaaa ccaaattatt 1561 gctatctttt tgcatttttg caattttata aaaaataaca aagaaaacga aaaagaaaaa 1621 ccaaaaaact acaactaaag atcataataa actttaacat tcggagaagc aaaaacgaaa 1681 aagaacaagt aaacacattt agcaaaattt actcttttat ctaaacgaaa aaccaaaaaa 1741 cacaaatcaa agtaaaccta attcaagcat aaataaaatt ttaaacgttt tagacagaga 1801 acgctctaaa cttaacttaa aaagcaaata catttttttc gcgatcgtag ttgatctaaa 1861 aaccccctca aacccaaagt aaatccaaat aaaatcggcg ggaagagaaa cgagcagttg 1921 tgcaaagcgc agaaaatcgc cgatcagaga agaataattt ataagcgaaa accaaccaac 1981 caagcagtga gattaactac taaccgaaag gactaaatca ggactagagg acaggatcag 2041 aatcggaatc agaatcagga tgaccaacgc catggacata gtgaagaacg gcagtgccaa 2101 tggctccgtc gatggcagca atgatgagtc gcgcaccaat ttgatcgtca actatctgcc 2161 gcaaaccatg acgcaggagg agatgcgatc gctcttctcc agcatcggtg agctcgagag 2221 ttgcaaactg gtgcgtgata aagtctcagg taatttggtc ttgccagcat cgttgaccgc 2281 tctcaacccg gcactgcagc aaggtcagag tctgggctat ggctttgtta attacgtaag 2341 ggccgaggat gctgagaagg ctgtgaacac cctgaacggt ctgcgtttgc agaataaggt 2401 tattaaagta tcatacgccc gtccaagctc agaatctatt aagggtgcta atttatatgt 2461 atcgggtctt ccgaaaaatc tatcacaacc agacttggag gggatgtttg cttcgttcgg 2521 caaaataatt acatctcgta tactctgtga taatatttct ggtctatcga agggcgtcgg 2581 ttttatccgt ttcgatcagc gcaacgaagc cgagcgagcc atccaggagc tgaatggcaa 2641 gaccccgaag ggctatgccg aaccgattac cgttaagttt gccaataatc cgagcaatag 2701 cgccaaggcc cagatcgccc cgcccctcac cgcctaccta actccccagg cggcagcggc 2761 cacccggcgt ttggccggag ctctgccctc cgccggtcgc ataaggtact caccgctggc 2821 tggcgacctc ttggccaact cgatcttgcc cggaaacgca atgaccggct cgggatggtg 2881 tatattcgtc tacaatttgg ccccggagac cgaggagaac gtgctgtggc agctgttcgg 2941 tcccttcggg gccgttcagt cggtgaaggt gatccgcgat ctgcagacca gcaagtgcaa 3001 gggcttcgga ttcgtcacca tgaccaacta cgacgaggcc gtggtggcca tccagtcgct 3061 gaacggctac accctgggca atcgggtgct ccaggtcagc tttaagacta acaagaccaa 3121 aaccacttag gcgaacccgc caatctggac tagacctctc caatactcca cgatctgttt 3181 gatttgacga cacctagaca cctagactat agattgatct gatcttatat gatatgatgc 3241 gatatgatat gggacaatag tcgaaattgc gaatattagc gcgagttatg atgtgtctat 3301 catttgattt gtacgctaaa cgaaattatt atgattgtaa ttctaatgaa atcttagtga 3361 aaattgattt atttccatct gtataattta atttaattat ctaaaccaag aaacaaataa 3421 caaaaaacga aaaaaaaaaa caaagcttga atgaggcaac caaaaaacac aacacagaaa 3481 ctaaggcaaa ctttagaaaa aggaagatgt gcaagacaaa tgtctataaa ttgacaaatg 3541 agtaaaaaat gagagggaat aagaagtaaa aataaaagaa aagaaaaaac gaaaaacgat 3601 aaataaaaaa ccgcaaaaat atgaataaca aacgaaaatg atctaagtcg caatatatag 3661 taactatttt tttttaacac ttatgtatat gtaattcaat tcgattatat tcaattaaac 3721 aaagtattta aacaagctaa ccaaatgatt taatgtctat tgatttaaga tttaccaaca 3781 taactctctc agcttaccta agtacttatt ataatggata tgcataaata tattgtattg 3841 tattgtattt tgtgttcgtt ttgcaacctt aacttacatt aacttacctt acattacatt 3901 acattaattc tagtgctatt cagctcttat atttaattcg attcgccatg atttacactc 3961 gaagacgaaa cgaaaatcga agataaagcc gcgatatatc ctccaaacgt aacaagaaaa 4021 cccaaaaccc aacccccagc accgaaaaac acactcacac gtaatcatta ttatatatat 4081 gtaaccagat ttaattaccc ttttttcgtc gtctaagatt tgtattctcg tattcgtcaa 4141 gtgcaaacca aagtaaatga aaccaagaaa acttattata ttatattaaa ttatatatta 4201 ttacgcctac ttattattcc atttttataa ttattataac ttattgaatg caacaaagcg 4261 aaacaaaa