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LOCUS XM_070218534 7339 bp mRNA linear INV 09-DEC-2024 (RhoGAPp190), transcript variant X5, mRNA. ACCESSION XM_070218534 VERSION XM_070218534.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7339 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7339 /gene="RhoGAPp190" /note="Rho GTPase-activating protein 190; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056706" CDS 106..4995 /gene="RhoGAPp190" /codon_start=1 /product="rho GTPase-activating protein 190 isoform X1" /protein_id="XP_070074635.1" /db_xref="GeneID:108056706" /translation="MRQFNISVIGLSGTEKDRGQVGVGKSCLCNRFMRPMADDYFIDH ISVLSQSDFSGRIVNNDHFLYWGDVRKTTEEGVEYQFNIIEQTEFMDDSTFQAFKVGK MDPYSKRCTATKVFSAEKLMYICKNQLGIEKEYEQKVMPDGRLSIDGFVVVFDVSPVP NRSVEKQVEFVQNVIATILKNKKPLVLVTTKNDDAYELYVREAEKISQRKDYKSTVQL IETSAHESINIDLAFLLLAQMIDKVKNRVKIISYQESAKSRKELLDTRSEAVTRLIRN QITDYHVLWSQGSKMLSQYREWNEFLNIFGHEAGQKLFRRHMKKLRDDHLNKKLHQYL DKFALALEYLLPDIGALNISDDDAWECARNYLQNHIEFEQYFFECPQASWTELVDMDE AEDEARIPFDVLETSEAETVFRNYLNSVQQDKKKIGWKQQFKMLLEESGFVTPGKQLS EVRVLFMGRECFEALSEHDCQQIYDIHQDDIIEKSKQNFVELLLEHAQYFLQFKNVDN ITQEDVRQITDVIQEDSRYKMLDRLDQERRLMLVQHLRFIHCPIRDHCPFFYNCVDSL IEEVLSDKSASNHKTPSNVGGWKTSGSGSDRTLNLLIVGSEHLASDLLNDIRICTGSK GEYIYENQTYYLNYRIANGDMEAFKAIDVYSSGLICVYSNQQSFETLKDNLERTLLCN LELEDKFENLPIVLVYQPQDLKENEVEYLRNEGMRLSEMLHCDFIDHTQNHQKYVYDI LNIVILSLKLTEMKSYEPYPSNHTDLRILCCIFCGDQYDIENIVQPLVAESTLVKANE HSIIIDVFIGDAKRRVEFILSSYHGTSQYRDELIHGYIYFYSAKRRSSLANLSILAAQ NANIPLQIIAVTESGGVNAFFNSDICQFLITEGNAVADRFKGSFMTFSADQYVKFAFY NPFLKTAWDNKYEVENLHVEESITLDSGEGTLENSVNQMPRPPPRHESYMLSNTLGTD GSGSENYEMAPTRSLNSLNEERDISLDEIYDDNEKPKHLHQRFQIFPPPTTPPEPAPP DHQLITCTYKSQFVSASESSLEEITSDVSGSKDSLATHDAEWLEDKSDGRRNMNKNSI WNNFSGSTHAYTTGRRHIDSNLNKIRPKGPSQTLKVGEAPSRNCPAMSSSTFTLPTQQ PGKLNMKNFQLVSDAVAKMNFTGSGSGSGSGSGSGSTGLGLGLGTGGSGSMADSYLEP CDKDGKRYDHAQLDGEDEDSEELAEYEQIYENEDCTESDSCASSTERRVRQQNAYYKA NSKKPVAAKKQKKKKVAIPVQTPRVPPFGSYVSPPEIPLHYQRMVVGGGGGGGGGPGE KKKPEPCVPDFMKSDKSPEYSMVPELAAAGIFGAENIPEYSAKCLKEYEKLEKLEKRR IKEETARLRKLQEKEKEQEKKLKRKLKQNSKGLVESAEAQFGKLMISSEQGEIPIFLN KCVEFIEKEGLDSEGIYRVPGSRAHVDMLFQRFEDDTNTEIDALDIPVNAVATALKDF FSKRLPPLFSKDIIKELEEIAGSRGVGNSKLNVEVKTDRSCRLIALKSLLQKLPPINF AILKYIFQHFVHVSDNSKLNSMDSKNLAICWWPTLIPIDFTDMGHFEQLRPYLEDIVQ TMIDQFPYLFCGKDAFVMV" misc_feature <547..819 /gene="RhoGAPp190" /note="Members of the P-loop NTPase domain superfamily are characterized by a conserved nucleotide phosphate-binding motif, also referred to as the Walker A motif (GxxxxGK[S/T], where x is any residue), and the Walker B motif (hhhh[D/E], where h is a...; Region: P-loop containing Nucleoside Triphosphate Hydrolases; cl38936" /db_xref="CDD:476819" misc_feature 673..684 /gene="RhoGAPp190" /note="G4 box; other site" /db_xref="CDD:206648" misc_feature 769..777 /gene="RhoGAPp190" /note="G5 box; other site" /db_xref="CDD:206648" misc_feature 865..1104 /gene="RhoGAPp190" /note="p190-A and -B Rho GAPs FF domain; Region: RhoGAP-FF1; pfam16512" /db_xref="CDD:465153" misc_feature 1900..2352 /gene="RhoGAPp190" /note="pseudoGTPase domain found in the family of p190RhoGAP; Region: pseudoGTPaseD_p190RhoGAP; cd22207" /db_xref="CDD:412064" misc_feature 4360..4962 /gene="RhoGAPp190" /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an...; Region: RhoGAP_p190; cd04373" /db_xref="CDD:239838" misc_feature order(4465..4467,4579..4581,4591..4593,4837..4839, 4846..4851,4933..4935) /gene="RhoGAPp190" /note="putative GTPase interaction site [polypeptide binding]; other site" /db_xref="CDD:239838" misc_feature 4465..4467 /gene="RhoGAPp190" /note="catalytic residue [active]" /db_xref="CDD:239838" polyA_site 7339 /gene="RhoGAPp190" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tctaattttt gttgttgtgt cagtaatgtg atgtgaatta ctcgtactaa aattgtaaat 61 tcgaaccccc gcattggagt gcaagtgcaa taattgtacg tcaagatgcg tcagtttaac 121 atctcggtca ttggactatc cgggaccgaa aaggaccgcg gccaggtggg cgtgggcaag 181 tcatgcctgt gcaacagatt catgcgccca atggccgacg actacttcat cgatcacata 241 tcagtgctca gccagagcga cttcagtggc cggatcgtga acaacgacca ctttctctac 301 tggggcgatg ttcgcaagac gacggaggag ggcgtcgagt atcagttcaa tatcatcgag 361 cagaccgaat tcatggacga ctccaccttc caggccttta aggtgggcaa gatggatccg 421 tactccaagc gttgcacagc caccaaggtc ttttcggcgg agaaactaat gtatatatgc 481 aagaatcagt tgggcatcga gaaggagtac gaacagaagg tgatgcccga tggccggctg 541 agtatcgatg gctttgtcgt cgtcttcgat gtgagtcccg tgcccaatcg cagtgtggag 601 aagcaggtgg aatttgtgca gaacgtcata gccaccatat tgaagaacaa gaagccgctg 661 gtgctggtga ccacgaagaa cgacgacgcc tacgagctgt acgtacgcga ggcggagaag 721 attagccagc gcaaggacta caagagcacc gttcagctga tcgagacatc ggcccacgag 781 agcatcaaca tcgatttggc cttcctcctg ctcgcccaga tgatcgacaa ggttaagaac 841 cgggtcaaga tcatctcgta ccaggagtcg gccaagtcgc gcaaggagct actggacacg 901 cgttccgagg cggttacgcg actcattcgc aaccagatca ccgactatca tgtgctgtgg 961 tcgcagggct ccaagatgct gtcgcagtat cgcgaatgga acgagttcct caacatcttt 1021 ggccacgagg caggccagaa gctctttcgg cggcatatga agaagctgcg cgacgatcat 1081 ctcaacaaga agctgcatca gtatttggac aagttcgctt tggccctgga atacctgctg 1141 ccggatatcg gggctttgaa tatcagcgac gatgatgcgt gggagtgcgc caggaattat 1201 ctgcagaatc acatcgaatt cgagcagtac ttcttcgagt gcccgcaggc ctcgtggacg 1261 gagctggtgg acatggacga ggcggaggac gaggcacgca ttccgttcga tgtgctcgag 1321 acctccgagg cggagacagt cttccgtaat tacttgaatt cggtgcagca ggacaagaag 1381 aagattggat ggaagcagca attcaagatg ctgctcgagg agtccggctt tgtgacgccc 1441 ggcaagcaat tgtccgaggt gcgagtcctt ttcatgggcc gcgaatgctt cgaggctctg 1501 tcggagcacg actgccagca gatctacgac atccaccagg acgacatcat cgagaagagc 1561 aagcagaact ttgtggagct actgctggag catgcccagt actttctgca gttcaagaac 1621 gtggacaata tcacgcagga ggatgtccgc cagatcacgg atgtcataca ggaggattcg 1681 cgctacaaga tgttggatcg tttggaccag gagcggcggc tgatgctcgt ccagcatttg 1741 cgcttcatcc actgccccat ccgggatcac tgcccctttt tctacaactg tgtcgatagc 1801 ctgatcgagg aggtgctgtc cgacaagtcg gccagcaatc acaagacgcc cagcaacgtc 1861 ggcggttgga agacatcggg cagcggcagc gatcgcacgc tcaatctgct gatcgttggc 1921 tccgagcatc tggccagcga tctgctcaac gacatacgca tctgcaccgg gagcaagggc 1981 gagtacatct acgagaacca gacgtattat ctcaactacc gaatcgccaa cggcgacatg 2041 gaggccttca aggccatcga tgtctattcg agtggtctca tttgcgtgta ctccaaccag 2101 caatcctttg agacgctcaa ggataacttg gagcgcacgc tgctctgcaa cttggagctg 2161 gaggataagt tcgagaacct gcccatcgtg ctcgtctacc agccgcagga tctcaaggag 2221 aacgaggtgg agtacttgcg caacgagggc atgcgactgt cggagatgct gcactgcgac 2281 ttcatcgatc atacgcagaa tcaccagaaa tatgtctacg acatactcaa cattgtcatc 2341 ctgtcactga agctgaccga gatgaagagc tacgagccat atccctccaa tcacaccgat 2401 ctgcggatcc tgtgctgcat cttctgtggc gatcagtacg atatcgagaa cattgtgcag 2461 ccgctggtcg ccgaatcgac gctggtcaag gccaacgagc actcgatcat aatcgatgtc 2521 ttcatcggcg acgccaagcg gcgggtcgag tttatcctgt cttcatatca cggcactagc 2581 cagtaccgcg atgagctaat ccatggctac atttactttt actccgccaa gcgtcgatct 2641 tcgttggcga atctaagcat cctggcagcc cagaatgcca acattccatt gcagattatc 2701 gcggtgaccg agagcggggg cgtaaatgcc tttttcaaca gcgatatttg ccagtttttg 2761 atcaccgagg gcaatgcggt ggccgatcgc ttcaagggca gctttatgac cttctcggcg 2821 gatcagtatg tcaagtttgc gttctataat ccattcctga agaccgcctg ggacaacaag 2881 tacgaggtgg agaacctgca tgtggaggag tcaattactt tggattcggg cgagggcacg 2941 ctggagaact cggttaacca gatgccacgc ccgccgccgc gccacgagag ctacatgctg 3001 tccaatacgc tgggaaccga tggttccggc agtgagaact acgaaatggc tcctacccga 3061 tctctcaact cattaaatga agaaagagat atatcattag atgaaatcta cgatgacaac 3121 gaaaagccca agcacctgca tcaaagattc cagatattcc ctcctccaac aactcctcca 3181 gagccagccc ctccagatca tcagctcatt acatgcacat ataagagtca attcgtttcg 3241 gcttcagaat caagtttgga agaaataaca tccgatgtca gcgggtccaa ggattcactg 3301 gccacccatg atgcagagtg gctggaggat aaaagcgacg ggcggcgcaa catgaacaag 3361 aactcgattt ggaacaactt tagcggatcg acacatgcct acaccaccgg ccggcggcac 3421 attgactcca atctgaacaa gatccgcccg aagggaccca gccaaacgct gaaggtgggc 3481 gaggcgccca gtcgcaattg cccggcgatg agctcctcca ccttcaccct gcccacccag 3541 cagccgggca agctgaatat gaagaatttc cagctggtca gcgatgcggt ggccaagatg 3601 aatttcaccg gatccggttc gggatcggga tcaggctcgg gatccggtag caccggtttg 3661 ggcttgggcc tgggcaccgg cggcagtggc agcatggcgg actcgtatct ggagccctgc 3721 gacaaggatg gcaagcgata cgatcacgcc cagttggatg gcgaggatga ggattccgag 3781 gagctggccg agtacgagca gatctacgaa aacgaagact gcaccgaatc cgacagctgt 3841 gccagttcca cggagcgacg ggtgcgccag cagaacgcct actacaaggc caacagcaag 3901 aagccggtgg ccgccaagaa gcagaagaag aagaaggtgg ccattccggt gcagacgccg 3961 cgtgttcctc cgttcggctc atatgtgagt ccgccggaaa ttccgctgca ctaccagcga 4021 atggtcgttg gcggcggggg cggaggcggc ggcgggccag gtgagaaaaa gaaacccgaa 4081 ccttgcgttc ccgatttcat gaagagcgac aaatcgcctg agtattccat ggtgccagag 4141 ctggcggctg ctgggatctt cggtgcggag aatatacccg aatatagcgc caagtgcttg 4201 aaggaatacg agaagttgga gaagctagag aagcggcgca tcaaggagga gacggccagg 4261 ttgcgcaagc tccaggagaa ggagaaggag caggagaaga agctcaagcg caagctgaag 4321 caaaactcca agggtctcgt tgaatcggcg gaggcgcagt ttggcaagct gatgattagc 4381 tccgagcagg gtgagatccc cattttcctc aacaagtgcg tggaatttat cgagaaggag 4441 ggcctggatt ccgagggcat ttatcgagtg cccggcagca gggcgcatgt cgacatgcta 4501 ttccaacgat tcgaagatga taccaacacc gagattgatg cgctggacat tcccgttaac 4561 gcagtggcca cggcactcaa ggactttttc tccaagcgcc tgccgccgct gttcagcaag 4621 gatatcatca aggagctgga ggagattgcc ggttcccgtg gcgtgggcaa ttccaaactg 4681 aatgtggagg tcaaaacgga ccggagttgc cgcttgatag ctttaaaatc gctgctccaa 4741 aagctgccgc ccatcaactt tgccatactc aaatacatat tccagcactt tgtgcacgtc 4801 tcggacaact cgaagctaaa tagcatggac agcaagaacc tggccatctg ctggtggccc 4861 acactcattc ccatcgactt caccgacatg ggccacttcg agcagctgcg tccgtatctg 4921 gaggacattg tccagacaat gatcgaccag ttcccgtatc tgttctgcgg caaggatgct 4981 tttgtcatgg tctaggccta gatccccgcc agatcatggc gcacttggac tttcacttga 5041 ccgccggacg cgaagccaaa acgagatagt tagattcaat gtgcgagtgt atgaatgtgg 5101 gcgccatcca gtgccatgtg tgctttgtgt tttctgggtg atcaagatgt aaggagtaat 5161 agccatagga aggaaagaag gagggaagaa aggaaggaaa ggaaggttag caggaggcag 5221 cccatcgatc gatcgattca ttcaaatgag gatcagcagc caggcatata catatttata 5281 atagtatata atatatactt gggtctattg tgtgcgattt gtgtgattgt gcgtgcgtgc 5341 gtgtgcgtat gtgagaacag aacttggcta agtagggtat atttattttt tatatataca 5401 atatatattt tgtatcgatg gctttgttgt gtttccgtga tatatgtaaa cgcgtcaagt 5461 attctctctc tgtgtgtggt gcgtccttta gtcgttgaat ccattgagtg agacctcccc 5521 tcgccgcccc ccagacccca cccccaaaaa agtcttctaa ctccaagctc catctaaact 5581 cctcccatca acaaaacgaa caaaggggcg gggcgggggc gccaacgaca acgcacaaaa 5641 aatataaaaa acaaaaaata taaaaaccaa gatatagatg aaggcatggg gagatatcta 5701 aaatctagta cgaagatggt taaataaaat ttactgtgta tctgtgtatg ttataaatgt 5761 aattgtaatt gtatgttaaa aataatgcgc gatcagcaaa caaatttcca tataaacaca 5821 atagcgataa tgctagatat ataatatata tttaaatacc actaaatgtc tgtgtgtcta 5881 gaataggaga aagtatgtag tagaggacga agaggaggag gaggaggctt ttgggagaaa 5941 ggacaaccga aaaaacaaaa acaaaacaac ccataagaac aaccgagcaa aatctaattt 6001 tcgagctaaa ctaaatgtgc atctcagtgt gtgtgtctgt atatgtatgt ttgtcatcca 6061 actagatata cactatataa ttatatagct accatataag caaaaaatga taattactac 6121 gaaacggcaa aggaaatctc ccataaaaaa tatgaaaaaa aaaaccaaga aaaacgaaga 6181 aaataaaact caaatttccc cccacactcg aatctccact gattgtctaa ttgatatttg 6241 cattagccag gcatataatc cttaatgtaa tactctctct atctgtctct ctgaaaaacg 6301 aaaacgataa cgaaaaaaac caaaatgtgt gtgtgtactg tatcaaatta gcgaaacaac 6361 aaattataca atttctaccc atgtacgcat atattttaac taaacaaaaa agaaagcgag 6421 gatcagatca gatattcaga aataaacaaa aggtaaggca gcagaaaata ataatatttg 6481 acaacaggca gaggcaaata agtaaaaaat tgtagacaac atacgcctaa gtgttattcc 6541 ttgtaattga gcattaattt tttatataaa accgaaactt aattatgtaa ttgtgtgtat 6601 cttgtgtctg aaacggacct caaacttaaa ggaagtaaaa aataacgcga tttctgttgc 6661 caacaaaaaa cagaaggcag aaaaataagc actcaaagta aaattaaaac aaaaaaaaaa 6721 agataaaaac caataacgag agaaaaagaa aagaaaaact taaccattat atagtataat 6781 ttgtatagat gtgtgtctat tgcattattt gtacacgtac atatatatac cgtctatata 6841 ttaccgtata tatgtgtatg catttattta tatacgctaa actgaaaaga aaaaaagaaa 6901 aaccaagcaa atatgtctaa acgaaacgaa caaaaaaatg caaaacaaaa cgaacaaaaa 6961 aattgtaatt gacgtgatgt gtaatgatat ttttaaaagc aaattttatg ccacgcccat 7021 gccaagcagc cacgccccct ttttaacaaa aagggcgatt tcccccccct cttcccgcgc 7081 ggaacgcagc cactttcccc ccgtcccgct cgcccagtaa ttccaaatct cactcccacg 7141 ctctccagat cacggatccc atggatccat acataaatcc tccaggtcag agatggtcag 7201 ttgctcctgg actccatcca atgggctggt agcgatgtgg aggcgcctca accaagagac 7261 gagagagaaa ataatacgaa atcaaatcaa agaaaaacaa aaataaattt gtgggcattt 7321 tccaaatatt tgtgaagca