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LOCUS XM_070218509 3290 bp mRNA linear INV 09-DEC-2024 (LOC108056013), mRNA. ACCESSION XM_070218509 VERSION XM_070218509.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq; includes ab initio. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 6% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..3290 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3290 /gene="LOC108056013" /note="homeobox protein ARX; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108056013" CDS 1..2157 /gene="LOC108056013" /codon_start=1 /product="homeobox protein ARX" /protein_id="XP_070074610.1" /db_xref="GeneID:108056013" /translation="MAQLGIRVEWPGLSWSLQDSPGVVLVVILGPLAKVSTRSHSDFD PPTKIRSIKTGARSPRDSFQLDYSIDFFKTYIDTQRFYAGHKLDFKHQSCAGGPGSGG TSASAGGPVVVGGNNSSNNNNSSNNSLATAAAQQQLQQQQQQAQQQQQQQQTNSNNGS NNGSNNSVLAHPHAHASHAHSSHAHNSHAHALAIAHGHHGLLPQQQQQQQAQQQQQQA QQLPQQLPQQLPQQQQQAQQQLINNNGGGATPTLLIGNGPSSAGGTPGSSVSSAAAAA AAQVAAAAAAAAAASAASSAAASSSSAVSVSSLPHVAPGHSLGLSPQSSADSQQFNIF PAIFSRQLNFSAAGGGQAGKGLSMDELRPNLVGGLLGLQQGLLEDHASQMQQHGGGVG VGGVGQDTKFMSFQDQRLMGIGGGSAHENRLLSLQDTRSPITTLEKSSSSSLNHQRKC SSTPEDFSALYSGLPTPGMDSSSHHHTPAHTPPSRLSDHTISAEGAFKKLKPEPNSGG LSTVSAGITSPGSGLSSLSQHAGHTPTTASCPTPARRRHRTTFTQEQLAELEAAFAKS HYPDIYCREELARTTKLNEARIQVWFQNRRAKYRKQEKQLQKALAPSVIPSCNGMMRN IQGYSVSRGYQPYPHHNTMNRYPQDLFQMGASSYPGMTQPFSMAHSTNMGSVGVRQDS MGMSPEDEWYNKSLSALRMNSSHHPNLSAPMLQYQT" misc_feature 1633..1803 /gene="LOC108056013" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" ORIGIN 1 atggcgcaac tcggcattcg agtcgagtgg ccaggattaa gctggtctct ccaggactcg 61 cctggcgtgg ttctggttgt gatactgggt cctctcgcca aggtctcaac tcgatctcat 121 tcggatttcg atccccccac caaaattcga tcaatcaaaa cgggagcgcg ttcgccgcga 181 gacagcttcc agttggatta ttcaatcgat ttcttcaaga cgtatatcga tacgcagcgt 241 ttctacgccg gccacaagtt ggatttcaaa catcagagtt gtgccggcgg ccctggttcc 301 ggtggaacgt ctgcctccgc cggaggaccc gtcgtcgtcg gcggcaacaa cagcagcaac 361 aacaacaaca gcagcaacaa cagcctcgca acagcggcgg cgcaacagca gctgcaacag 421 caacagcagc aggcgcaaca gcagcagcag caacagcaaa cgaatagcaa caacggcagc 481 aacaacggca gcaacaactc agttctagcc catccgcacg cccacgccag ccacgcccat 541 agcagccacg cccacaacag tcacgcccac gctttagcga tagcccacgg tcatcacggt 601 ctactgccgc aacagcagca gcagcagcag gcgcaacagc aacagcagca ggcgcaacag 661 ttgccgcaac agctgccgca acagttgccg caacagcaac agcaagcgca acagcagctg 721 atcaacaaca acggaggcgg agccacaccc acgctgctca tcggcaacgg accgagctca 781 gcgggcggaa ctccgggatc ctcggtctcc tccgccgcag cagcagcagc ggcacaagtg 841 gcagccgcag cagcagcagc cgccgccgcc tcggccgcct cctcggcagc cgcctcctcc 901 tcctccgccg tctccgtgtc ctcgctgccg cacgtggcgc ccggacacag cctgggcctc 961 agtcctcagt cctcggccga ttcgcagcag ttcaacatct ttccggcgat cttcagccgc 1021 cagctgaact tctcagcggc cggcggcgga caggcgggca aggggctgag catggacgag 1081 ctgcgtccga atctggtggg cggtctgctg gggctgcagc agggcctgct ggaggatcat 1141 gccagccaga tgcagcaaca cggcggcggc gttggcgttg gcggcgtggg gcaggacacc 1201 aagttcatgt cctttcagga tcagcggcta atgggcattg gcgggggatc ggcgcatgag 1261 aatcggctgc tcagcctgca ggacacaagg tcgccgatca ccacgctgga gaagtcctcc 1321 tcctcgtcgc tgaaccacca gcgcaagtgc agcagcacgc ccgaggactt cagcgccctc 1381 tactcgggtc tgcccacgcc gggcatggac tcgtcctcgc accaccacac gccggcccac 1441 acgccgccct cgcgcctctc ggatcacacg atctcggcgg aaggcgcttt caagaagctg 1501 aagccggaac ccaacagcgg cgggctgtcg acggtttccg ccggcatcac atcgcccgga 1561 agtggattat catcgctcag ccagcacgcc ggccacaccc caaccacagc gtcctgcccc 1621 acgcccgccc gccggagaca ccgcaccaca ttcacacagg aacaattagc ggaactggag 1681 gcagcgttcg ccaaatcgca ttatccggat atttactgcc gcgaagagct ggcgcgaaca 1741 acaaagctga acgaggcgcg gattcaagtc tggtttcaga accgacgcgc caagtatcgc 1801 aagcaggaaa agcagctgca gaaggcgctg gcaccgtctg tgatcccatc ctgcaacggg 1861 atgatgagga acatccaggg ctacagcgtc tcgcggggct accaaccgta tccgcaccac 1921 aacaccatga accgctatcc ccaggacctg ttccaaatgg gcgcctcctc ctatccgggc 1981 atgacgcaac cgttctccat ggcgcacagc acgaacatgg gatccgttgg ggtgcgtcag 2041 gattcgatgg gaatgtcccc ggaggacgag tggtacaaca agagtctgtc cgccctgcgg 2101 atgaactcgt cgcatcatcc caacctgtca gccccaatgc tgcaatacca gacataatca 2161 aaaacctttg acgacttctt ttaaaagatc gcaccttaat tggcatttaa ggtgcggtgt 2221 tttaagggcg agtgcgtcaa gcgtcaagcg tcgagcgtaa cacatcctat aacatccaca 2281 cacaaattga aatctctgtc tatatcctat gcatatatcg ttgtatatat gtacatagta 2341 tatataccag tcattagttt ccagaaccca gaacccggaa cccggaaccc acggatgtgc 2401 agatagatcg tagcatcgct ttgagttcgg gagcgaaagt tcattgtctg ggcgggactt 2461 actcataaga cttgttgata tattattctg tgtttttttt tcaaatcttt ttttttttat 2521 tggaccatcg cgatccaaat cgaataagag gggcagagtg tcggagctaa acaaatacaa 2581 gcggaagatc ggatgatatt gtaataggca actagtcata gtatctaagc aaattgtgta 2641 ttgagatttt atcgtggcat tataaaaagt aaagtaaaag taaaggcata aatcatgcgt 2701 atatataaat ttaaataaat atactaaaat atgtactagc gatagcataa gtcaggttgc 2761 ttagcccccc agtctgatct gatcggatct actcctacgc aactctttgg ttgcttctac 2821 cgacttttca ttgcctgctc actatacatt aaacatagct tactcaaaca tacgacgtac 2881 attgtagctc ctcccctcct cccaaaatcc caaaaagccc catctacccc ctccatctga 2941 ccattcatag agccgaaatg cacaggaaac caagccaaac ccaaacgaat tacactacaa 3001 actttctaac taattcaagg tgtgtcgaac taattataag atgatttttt ttagctaagc 3061 aatgcattaa cgagttatat ttaataataa tactaaatga aaccaataaa atacatcacc 3121 tatatatatt taaatacgaa aaaacaaaca agccaaacga aaactacaag acgcatgttt 3181 aacaaattat gccagacaca gcaaaaatgg aaataataaa aatattaaaa acaaagttat 3241 agaaatgcct tatgatgtat ttatttttaa agcaaaataa ggtgacaaaa