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LOCUS XM_070218495 2150 bp mRNA linear INV 09-DEC-2024 phg2 (LOC108066876), mRNA. ACCESSION XM_070218495 VERSION XM_070218495.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq; corrected model; includes ab initio. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases frameshifts :: corrected 1 indel internal stop codons :: corrected 2 genomic stop codon ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-299 JARPSC010000001.1 5327848-5328146 c 300-517 JARPSC010000001.1 5327264-5327481 c 518-1880 JARPSC010000001.1 5318740-5320102 c 1881-1881 "N" 1-1 1882-2150 JARPSC010000001.1 5318471-5318739 c FEATURES Location/Qualifiers source 1..2150 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2150 /gene="LOC108066876" /note="serine/threonine-protein kinase phg2; The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108066876" CDS 471..2150 /gene="LOC108066876" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; substituted 2 bases at 2 genomic stop codons" /codon_start=1 /transl_except=(pos:1893..1895,aa:OTHER) /transl_except=(pos:1923..1925,aa:OTHER) /product="LOW QUALITY PROTEIN: serine/threonine-protein kinase phg2" /protein_id="XP_070074596.1" /db_xref="GeneID:108066876" /translation="MAHITTTHGSLSQAPRLKNRRKITAMSSNNGNDQSQAPPATATY VAAAAATTTAHQEANAAAAAAAGSGSGSQVSRPATAPARSSNNNNNGSSSNTSFYTVN LSNTDGSNNNTSSSSSSSNAKQASNNNHNESSTLVVNTSNTAATATATSATNNNHIYV NPHSYDSSTTGSASGSTAVMLPLPLTLPLQHLPQQHLQPAAATAAATLEQQQHPLGSS NTGAISRIGTSTSTTLSTLNTYLFPCGADSASSCDLDSNFSQMLGGGSEGSQATAPAG SGSQSGLGLGSGLGVQLGLGFINSRRRIRRLFGVAVGNGEMVPPALAATPTPYAAALR RRSSQQVLQVQQMSKKREKELEDMEQQQRIATVASANAAFLERREQQQQQQQQHLQFA FNPLQLEAGKKKKKKPPGPPAHTRQQSSRTMDDPMMNRPRKNTPAVSKKKEKGPENPY EKYPSPKIQIQKHPPLLSLTXKNNXIKLRENKYIXLNIMQQNKMLIFEFDLRAAILFD LLACNDLNKMIKKYISLKFLSTALLYRFSTLFRLVDILLCTQSCKFYLMPM" ORIGIN 1 ggataaaaat aaaaaaggac agcgggtaaa atcctacaat tgtgccattt tttttgccag 61 tgcatttgat gatcgtgttg tgaaaaactg ataaatccga aaatcaacgt cgaatttctc 121 gattcttgat tcccatgtga atagtgtcgc gttggtcgtt tctgttgtca ttctcgttga 181 tgacgttgtc aatctgccct tgtccccccc tctcgctctc gctctcccct ctccctctaa 241 caatctcggc ccctctcttt ctttagccca aaattatatg taaaattctt gagttttttt 301 cttaagtgtt tcccgacgca aggaaagccg aagaaaaacc gaatcggtcg gaattggaaa 361 agcaattaaa agccaagaat ccaaggaaag tagggagaag gaggaggagg tcaaagtgca 421 actgtgcaga gcgagaaaaa gtggagtagg tcgatgaatg gatcgcctgc atggcccaca 481 tcacgacgac gcacggcagc ttaagccaag cgccaaggct taaaaatcga cgaaaaatca 541 cagcaatgag cagcaacaat ggcaacgatc agtcgcaagc accaccggca acagcaacat 601 atgttgcagc tgcagcagca acaactactg cccatcagga ggccaatgca gctgcagcag 661 cagcagcagg atcaggatca ggatcacagg tttcgcgacc tgcaacagca ccagctcgct 721 ccagcaacaa caacaacaac ggcagcagca gcaacaccag cttttacact gtcaatctga 781 gcaacacgga cggcagcaac aacaacacca gcagcagcag cagcagcagc aatgcgaagc 841 aggccagcaa caacaatcac aatgagagca gcactttggt ggtcaacacc agcaatacgg 901 ctgcaacagc aacggcaaca tcggctacca acaacaacca catctatgtg aatccgcaca 961 gctacgacag cagcaccacc ggcagcgcca gtggctccac ggcggtgatg ttgccactgc 1021 cactcacttt gccgctgcaa cacctgccac agcaacacct gcagccggca gcagcaacag 1081 cagcagcaac actcgagcag cagcaacacc ctctgggcag cagcaacacg ggtgccatca 1141 gtcgcattgg cacctccaca tccaccaccc tgagcaccct gaacacatat ctctttccct 1201 gcggcgccga ttccgcgagc agctgcgatt tggacagcaa tttcagccag atgctcggcg 1261 gaggaagcga aggcagccag gcaacggcac ccgcgggatc tggatcccag tcgggattgg 1321 gactgggatc gggattgggc gtccagttgg gactgggctt catcaacagc cgacggcgca 1381 ttcggcggct ctttggcgtg gcagtgggaa atggtgagat ggtgccgccc gctttggccg 1441 ccacgcccac accctatgcc gccgccctgc ggcgacgcag ctcgcagcag gtgttgcagg 1501 tgcagcagat gagcaagaag cgggaaaagg agctggagga catggagcag cagcagcgaa 1561 tcgcaacggt ggcctcggca aatgccgctt ttctcgagcg acgcgagcag cagcagcagc 1621 agcagcagca acatttgcag tttgccttta atcccctgca attggaggct gggaaaaaga 1681 agaaaaagaa gccacctgga ccgcctgcac acacgagaca gcaatcgtcg cgaaccatgg 1741 acgatcccat gatgaatcgg cccaggaaaa atacaccggc ggtcagcaag aagaaggaaa 1801 agggacccga gaacccctat gagaagtacc catcaccaaa aatccaaatc caaaagcacc 1861 caccgctctt aagcctcacc naaaaaaata attaaattaa attaagagag aacaaatata 1921 tttaattaaa tattatgcag caaaacaaga tgcttatctt tgaatttgat ttacgcgctg 1981 ccattttgtt tgatttactc gcttgtaacg atttgaataa aatgattaag aaatatatat 2041 ctttaaaatt tttgagtacc gctttgcttt atcgcttctc aacgcttttt cgccttgttg 2101 acattctact ttgcacccaa agttgcaaat tttatcttat gcccatgtga