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LOCUS XM_070218481 3408 bp mRNA linear INV 09-DEC-2024 transcript variant X3, mRNA. ACCESSION XM_070218481 VERSION XM_070218481.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3408 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3408 /gene="sol" /note="small optic lobes; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108055917" CDS 253..3054 /gene="sol" /codon_start=1 /product="calpain-D isoform X3" /protein_id="XP_070074582.1" /db_xref="GeneID:108055917" /translation="MWTCIKCSYAYNRLWLQSCEMCEAKLEQQLLQQQQQQQAVVSFG QEKAAAPRDEPWTCKKCTLVNYSTAMACVVCGGSKLKSISSIEDMTLRKGEFWTCGHC TLKNSLHSPVCSACKSHRQPQLSISSLEAVRERPDGQSYEEQDAVAAAAAGGGGSTTS NSEVKAPAAAALNLPLASVALPLPLLQIPTTSAAGLRGSRSPSPRMQPSQQQQQRSSS STSSSSGAIPKRHSTGGSIVPRNISLAALASSYNLQQQSAASAPESSSLKKWQCPACT YDNCAASVVCDICSSPRGLASAVLGEALARKSIRVALTPADIRQESKLMENLRQLEET EALTKWQNIIQYCRDNSELFVDDSFPPAPKSLYYNPASGAGEGNPVVQWRRPHEINCD GGAYPPWAVFRTPLPSDICQGVLGNCWLLSALAVLAEREDLVKEVLVTKEICGQGAYQ VRLCKDGKWTTVLVDDLLPCDKRGHLVYSQAKRKQLWVPLIEKAVAKIHGCYEALVSG RAIEGLATLTGAPCESIPLQASSLPMPSEDELDKDLIWAQLLSSRCVRFLMGASCGGG NMKVDEEEYQQKGLRPRHAYSVLDVKDIQGHRLLKLRNPWGHYSWRGDWSDDSSLWTD DLRDALMPHGASEGVFWISFEDVLNYFDCIDICKVRSGWNEVRLQGTLQPLCSISCVL LTVLEPTEAEFTLFQEGQRNSEKSQRSQLDLCVVIFRTRSPAAPEIGRLVEHSKRQVR GFVGCHKMLERDIYLLVCLAFNHWHTGIEDPHQYPQCILAIHSSKRLLVEQISPSPHL LADAIISLTLTKGQRHEGREGMTAYYLTKGWAGLVVMVENRHENKWIHVKCDCQESYN VVSTRGELKTVDSVPPLQRQVIIVLTQLEGSGGFSIAHRLTHRLANSRGLHDWGPPGA THCPPIENVHGLHAPRLIT" misc_feature 256..318 /gene="sol" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275376" misc_feature 406..489 /gene="sol" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 418..477 /gene="sol" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275376" misc_feature 535..618 /gene="sol" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 541..600 /gene="sol" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275376" misc_feature 1054..1131 /gene="sol" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 1060..1119 /gene="sol" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275376" misc_feature 1270..2253 /gene="sol" /note="Calpain-like thiol protease family; Region: CysPc; smart00230" /db_xref="CDD:128526" misc_feature order(1504..1506,2002..2004,2062..2064) /gene="sol" /note="catalytic site [active]" /db_xref="CDD:238004" polyA_site 3408 /gene="sol" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgattggcgg ccagggccaa atgaagccgc tgcgccagca gcccgtcaat ctgaataccc 61 agcagcagca gcagcagcag aagtcgcagc tgcagcagca gcagcagcag cagcagagga 121 agaaccagcg ggagccagca gcacacgcat gatccgggta gcagcagtcg cctgataata 181 gccacatccg caacagcagc agcgaccaca tcctcgggag cggcgatagt tgcagcaggc 241 agccgcagca agatgtggac atgcatcaaa tgttcctatg cctacaatcg actctggctg 301 cagagctgcg agatgtgcga ggcgaagctg gagcagcaac ttctgcagca gcagcagcag 361 caacaggcag ttgtgtcctt tggccaggag aaagcagcag ccccccgcga cgagccgtgg 421 acctgcaaga agtgcaccct ggtcaactac tcgacggcca tggcctgcgt ggtctgcggc 481 ggctccaagc tgaagagcat ctcctccatc gaggacatga cgctgcgcaa gggcgagttc 541 tggacctgcg gccactgtac gctgaagaac tcgctccact cgccggtgtg cagtgcctgc 601 aagtcgcacc gccagccgca gctttcgatt tcctcgctgg aggcggttcg cgagcgaccc 661 gatggccagt cgtacgagga gcaggatgca gtggcagcag cggcggcagg aggaggaggt 721 agcacaacta gtaatagcga ggtgaaagca ccggcagcag cagctctcaa tctgccgctg 781 gcctcggtgg cgctgcccct gccgcttctg cagattccaa cgacctcggc ggctgggctg 841 cgtggctcgc gcagtccctc gcccaggatg cagccatcgc agcagcagca gcagcgaagt 901 tccagctcca cctcctcctc ctcgggcgcc atacccaaac ggcacagcac cggcggctcc 961 attgtgccca ggaacatctc gctggccgct ttggcctcca gctacaatct gcagcagcaa 1021 tcggcagctt ctgctcccga gagttccagc ctgaagaagt ggcagtgccc ggcctgcacg 1081 tacgataatt gtgccgcttc cgttgtctgc gacatttgct ccagtccgcg cggcctggcg 1141 agcgccgtgc tgggcgaagc gctggccagg aagtcgatac gcgtggcgct caccccggcg 1201 gacattcggc aggagagcaa gctaatggag aacctgcgcc agctggagga gaccgaggcg 1261 ctgaccaagt ggcagaacat cattcagtat tgccgcgaca acagcgagct cttcgtcgac 1321 gattcgtttc cgccggcgcc gaagagtctg tactacaatc cggcgagcgg agcgggcgag 1381 ggcaatccgg tggtgcagtg gcgccggccg cacgagatca actgcgacgg cggtgcgtat 1441 ccgccgtggg ccgtcttccg cacaccgctg ccctcggaca tttgccaggg cgtcctgggc 1501 aactgctggc tactcagcgc cctcgctgtg ctggcggaac gcgaggatct ggtgaaggag 1561 gtgctggtca ccaaggagat atgcggccag ggagcgtacc aggtgcgcct ctgcaaggac 1621 ggcaagtgga cgaccgtgct ggtcgatgat ctgctgccgt gcgacaagcg cggccatctc 1681 gtctactcgc aggccaagcg caagcagctc tgggtgccgt tgatcgagaa ggccgtggcc 1741 aagatccatg gctgctacga ggctcttgtg tcgggccgag ccatcgaggg cctggccacg 1801 ctgacggggg cgccctgcga gagcattccg ctgcaggcga gcagcctgcc catgcccagc 1861 gaggatgagc tggacaagga cctgatctgg gcccagctgc tgagctcgcg ctgcgtgcga 1921 ttcctcatgg gcgccagctg cggcggaggc aacatgaagg tggacgagga ggagtaccag 1981 cagaagggtc tgcgaccgcg acacgcctac tcggtgctgg atgtgaagga catccaggga 2041 catcggctgc tcaagctgcg caatccctgg ggtcactatt cgtggcgcgg cgactggtcg 2101 gatgactcct cgctgtggac ggacgacctg cgcgatgctc taatgccgca cggcgccagc 2161 gagggcgtct tttggatctc gttcgaggat gtgctcaact acttcgactg catcgacatc 2221 tgcaaggtgc gctccggctg gaacgaggtg cgtctgcagg gcactttgca gcccttgtgc 2281 tccatctcct gtgtgctgct caccgtgctg gagccgacgg aggcggagtt cacgctcttc 2341 caggaggggc agcgcaactc ggagaagtcg cagcgctcgc agctggacct gtgcgttgtg 2401 atattccgca cccgctcgcc ggcggcgccg gaaattggtc gtctggtgga gcacagcaag 2461 cggcaggttc gcggctttgt gggctgccac aagatgctcg agcgggacat ttacctgctg 2521 gtctgcctgg ccttcaatca ctggcacacg ggcatcgagg atccgcacca gtatccgcag 2581 tgcatcctgg cgatacacag ctccaagcgg ctgctcgtcg agcagatcag tccctcgccg 2641 cacctcctcg ccgacgccat aatcagtttg accctgacca agggtcagcg gcacgagggg 2701 cgcgagggca tgaccgccta ctacctgacc aagggctggg cgggtctggt tgtgatggtg 2761 gagaaccggc acgagaacaa atggatccat gtgaagtgcg actgccagga gagctacaat 2821 gtggtgtcca cgcggggcga actcaagacg gtggactcgg tgccgccgct gcagagacaa 2881 gtgatcatcg tgctcaccca actggagggc agtggcggct tcagcatcgc ccaccggctg 2941 acccatcggc tggccaactc gcgcggcctt cacgactggg ggccgcccgg cgccacccac 3001 tgtccgccca tcgagaatgt ccacggattg cacgccccgc ggctgatcac ctagaactct 3061 agtcgatttt ttgtcaacgt atcactcaca cacacatcac agcgaaggaa aaccaaaagc 3121 taaaaccaac catcaggcaa aacaaagcat atatatgtgt atagatccgt gcagatatat 3181 ctgatatatg tgtgtttatg tactaaggcg ggagcagatc gttcgggatg cggatgcgga 3241 tgcagagtcc ggagacctcg gcacaattcc ctcgagatca aatgatatat gttttgattt 3301 gagcgccgat gattatggat tatatagata tgtattgtga atttaagtgc atccaatatt 3361 aatatgtgta ttgttttaaa aataaagact acaagttata aaagccaa